Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq130668 89.7 4e-13 >seq130668 Length=27386 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || ||||| || || |||||||| || || | || ||||| || | Sbjct 9818 ATGCAGATCTTCGTGAAGACCCTGACTGGGAAGACCATCACCCTGGAGGTCGAGCCCAGC 9877 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | || ||||| ||| || ||||| ||||| | || || | Sbjct 9878 GACACCATTGAGAAC--GTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCTCCTGACC 9935 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || |||||||| ||||| |||| || | ||||| | |||| || |||| Sbjct 9936 AGCAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACA 9995 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCGACGA 28022 ||||||| |||||| ||| |||| ||||| |||||||| | || || | ||| Sbjct 9996 ACATCCAGAAAGAGTCCACCCTGCACTTGGTCCTGCGTTTGAGGGGGGGTGTCGA 10050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354399986692203