Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq316040 118 9e-22 seq314340 113 4e-20 seq302728 107 2e-18 seq314311 100 2e-16 seq130668 100 2e-16 seq130551 84.2 2e-11 >seq316040 Length=1005281 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | ||| | ||||| || || ||| |||||| || || || || || | Sbjct 910481 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 910422 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 ||| || || | || || |||||||||||||||||||| |||||||||||||| | || Sbjct 910421 AAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGTGG 910362 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || ||| ||||| |||||| ||||| || | | || || || | |||||| Sbjct 910361 AATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCGATGGTGTCACTGGGCTCCAC 910302 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || | ||||| | || ||||| || || || | ||||| ||||||| Sbjct 910301 TTCAAGGGTGATTGTCTTGCCCGTGAGGGTCTTCATGAAGATCTGCATCT 910252 >seq314340 Length=1169179 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | ||| | ||||| || || ||| |||||| || || || || || | Sbjct 629760 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 629701 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175 ||| || | | || || |||||||||||||||||||| |||||||||||||| ||||| Sbjct 629700 AAGAGTGCAGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGTGG 629641 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | || ||| ||||| ||||| ||||| || | | || || || | ||| | Sbjct 629640 G-ATGCCCTCCTTGTCTTGGATTTCAGCTTTGACATTCTCTATGGTGTCACTGGGCTCAA 629582 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || | ||||| | || ||||| || || || || ||||| ||||||| Sbjct 629581 CTTCAAGGGTGATTGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATCT 629531 >seq302728 Length=1132070 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| ||||| | || | ||||| || || ||| |||||| || || || || || | Sbjct 600824 GCCACCTCTCAGGCACAGCACCAGGTGCAGGGTGGACTCTTTGTGGATGTTGTATTCTGA 600883 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175 ||| || || | || || ||||||||||| |||||||| |||||||||||||| ||||| Sbjct 600884 AAGAGTGCGACCATCCTCCAGCTGTTTGCCTGCAAATATCAGACGCTGCTGGTCAGGTGG 600943 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | || ||| ||||| |||||| ||||| || | | || || || | ||| | Sbjct 600944 G-ATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCGATGGTGTCACTGGGCTCAA 601002 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || | ||||| | || || || || || || || ||||| ||| ||| Sbjct 601003 CTTCAAGGGTGATTGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCCTCT 601053 >seq314311 Length=485322 Score = 100 bits (110), Expect = 2e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 |||||| || || || || || | || || | | || || ||||||||||||||||| Sbjct 408810 CTCTTTCTGGATGTTGTAGTCTGAGAGAGTATGGCCATCCTCCAGCTGTTTGCCCGCAAA 408869 Query 39153 TATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG 39211 ||| ||| |||||||||| |||||| | || ||| ||||| |||||| | ||||| Sbjct 408870 TATTAGATGCTGCTGGTCAGGTGGG-ATGCCCTCCTTGTCTTGGATTTTATTTTTGACAT 408928 Query 39212 TCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 || | | || || || | ||| || || | |||||| | || ||| | || || || | Sbjct 408929 TCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATAATCTTGCCCATGAGGGTCTTCA 408988 Query 39272 CAAAGATTTGCATCTTT 39288 | |||| ||||||||| Sbjct 408989 CGAAGACCTGCATCTTT 409005 >seq130668 Length=27386 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | ||||| || || ||| |||||| || || || || || | Sbjct 9816 CCCCCTCTCAGACGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9757 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| || ||||||||||| ||||| || || | ||||||||| | || Sbjct 9756 AGGGTGCGCCCGTCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 9697 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||| |||||| ||| || |||| || | | || ||||| | ||| || Sbjct 9696 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACC 9637 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| ||||| | || || ||||| || || || ||||| |||||| Sbjct 9636 TCCAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCATC 9589 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || || || || | ||||| || || ||| |||||| || || || || || | Sbjct 10044 CCCCCCCTCAAACGCAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9985 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || ||| | || || ||||||||||| ||||| || || | ||||||||| | || Sbjct 9984 AGGGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 9925 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || || |||||| ||| || |||| || | | || ||||| | ||| || Sbjct 9924 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACC 9865 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| ||||| | || || ||||| || || || ||||| |||||| Sbjct 9864 TCCAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCATC 9817 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | ||||| || || ||| |||||| || || || || || | Sbjct 9588 CCCCCTCTCAGACGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9529 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| || ||||||||||| ||||| || || | ||||||||| | || Sbjct 9528 AGGGTGCGCCCGTCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 9469 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || || |||||| ||| || |||| || | | || ||||| | ||| || Sbjct 9468 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACC 9409 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || || ||||| || || || ||||| ||||| Sbjct 9408 TCCAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCAT 9362 >seq130551 Length=136198 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/235 (69%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | ||| | ||||| || || ||| |||||| || || || || || | Sbjct 89908 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 89849 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175 ||| || | | || || |||||||||||||||||| |||||||||||||| ||||| Sbjct 89848 AAGAGTGTGGCCATCCTCC-GCTGTTTGCCCGCAAATACCAGACGCTGCTGGTCAGGTGG 89790 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | | ||| ||||| |||||| ||||| || | || || || | ||| | Sbjct 89789 G-ATACCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTTGATGGTGTCACTGGGCTCAA 89731 Query 39236 CGTC----CACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || | |||||| | || |||| || || || || ||||| ||||||| Sbjct 89730 CTTCAAGGAATCGTGATTGTCTTGTCCGTGAGGGTCTTCACGAAGATCTGCATCT 89676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427780386249557