Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq314877 149 5e-31 seq123294 96.9 3e-15 >seq314877 Length=772221 Score = 149 bits (164), Expect = 5e-31 Identities = 132/165 (80%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | |||||||||||||| || || Sbjct 564768 AGGCCTGTGATGTGTGCGATCATGTATGTGAGCAGGGCATAGCTGGCGATGTTGAAAGGT 564827 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| |||||||||||||| |||||||| || ||||| |||| | Sbjct 564828 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 564887 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| ||||| || | ||||||||| ||||| || ||||| ||| Sbjct 564888 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAGA 564932 Score = 87.8 bits (96), Expect = 1e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||||||||| ||||| || || || || |||| ||||| ||||| ||| ||| Sbjct 568639 AAATGCCTCCATTGGAAGCCATAGACAGGGCCCAAATCTCCTTCTTCTCTGGTGGAGAAT 568698 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || |||||||||||||| ||| || ||||| |||||||| || || ||||| Sbjct 568699 CCTAGGCAGTCCAAAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTAGAA 568758 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || || ||||| | |||||||| || Sbjct 568759 GACAGTTCTTTAGCATTTGTGGATCC 568784 >seq123294 Length=241001 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| || | ||||| ||| ||||| |||||| || || Sbjct 182058 TTCAGTTCTCTACTGAGAACTAAATTAATTCTGTCCTTCAAAGGTCGATTCTTCTCAGGA 181999 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||||||||| |||||||| ||||||| ||||| |||||| Sbjct 181998 ATGGAGAACCAAGTCTTCCTACCCATAATCACCAGATTCTGTTTACCT 181951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404494076010454