Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq315408 185 1e-41 seq302530 116 5e-21 >seq315408 Length=2248345 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 9253 GTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCAC 9312 || |||||||||| ||||| ||| |||||||||||| || ||||| || || |||||| Sbjct 1254720 GTTGTCTGGAACAACTGCTCATCATCCCATTCTGGATGCTCCTGTTTGAGCACGTCGCAC 1254661 Query 9313 ACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCA 9372 || ||||||||||||| |||||||| ||||| |||||||| || ||||| ||||| ||| Sbjct 1254660 ACTCTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGCCCA 1254601 Query 9373 AAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATG 9432 || |||| || || ||||| | ||||||| ||| || || | || ||||||||||| Sbjct 1254600 AAGACCTCCTGCCCCACAGCAAACCGCATGTGTTCAGGGACATGAGGGGGATAGATCATC 1254541 Query 9433 TGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9479 | |||| |||||||| | ||| ||||||| || || ||||| Sbjct 1254540 TCAGCCTGAGTATCTTTGACTGTGGGAGGATACACCTCTCCATCAAT 1254494 Score = 138 bits (152), Expect = 2e-27 Identities = 226/326 (69%), Gaps = 0/326 (0%) Strand=Plus/Minus Query 8261 GCCTTGAGGAGCTCCTCATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTG 8320 || |||| ||||| | ||| ||||| ||| | | || ||||| || || ||||| Sbjct 1256396 GCTTTGATGAGCTGCGGATCCGGAACATTGAATGAAGTAAAGGGACAGCCTTTCACGTTA 1256337 Query 8321 CTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCG 8380 | || | ||||||||||| | || | |||| ||| || || || ||||| || Sbjct 1256336 TTGCAAATGAGAGACTGAATCGAGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCA 1256277 Query 8381 AAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGG 8440 || ||||| ||||||||||| | || || || || | || |||| || ||| | | | Sbjct 1256276 AAAGTGCTCGGCTTCCAGTAGGCAGGAGAACATATAGCATTACCCATAAGTCCTCTCAAG 1256217 Query 8441 GAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTT 8500 ||||| || || || | || | ||| ||||||| || ||||| | ||||| |||||| Sbjct 1256216 GAGAATGGTGCTCCAAGTTCTACCATGGTCTCACCAAATATGGCATCTGGACGAGGCTTT 1256157 Query 8501 TCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGT 8560 || |||| | | | ||||||||||| || || | ||| || || ||||| | | Sbjct 1256156 TCTACCAGAAGGGCAGGGTACAGCTCCATGGCATCAATGTCACCATAGAGGGCTTCCAAT 1256097 Query 8561 TCGGCAGCGATCTCCTTTTCTCCTGT 8586 || ||||| || ||||| || ||||| Sbjct 1256096 TCTGCAGCCATTTCCTTCTCACCTGT 1256071 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||||||||| ||||| || || ||| || ||| ||| | || Sbjct 1253588 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTTGCTTATGATCTGTCTTGAA 1253529 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| || ||||| || ||| |||| || |||||||| | || ||||| |||||||| Sbjct 1253528 AAACTGATGTGTGAAGTGCTGGGCAAAGAATGCAAACATCACATTTGTGCCTTGGGGATC 1253469 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 9806 || |||| || | |||||| ||||||||||| Sbjct 1253468 AGGGATGAACTCTCTTCTTAGAAGAAATTTTTCCACAA 1253431 Score = 86.0 bits (94), Expect = 9e-12 Identities = 170/250 (68%), Gaps = 4/250 (2%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| | ||| || ||||| | ||||| ||||| || | |||||||| || || | Sbjct 1255301 CTTACCCTGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGGGTAACTCCATGTTCC 1255242 Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAATCT 9061 | | ||| || |||||||||| || ||| | |||| || || | ||| || | Sbjct 1255241 AATAATATCGAGTTGTTGTAGAGAAACTGTTGA--TAGTTGTATTTCTGGTCATCGATTT 1255184 Query 9062 CAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9121 ||| | ||| || | || | |||||||||||| | ||||||| || | | |||| Sbjct 1255183 GAAAAGTATCAGGTAGAAGGGGATGCCAGTGATAGAGTGTGTTAAATTCAGCAGCAATAC 1255124 Query 9122 GATTTTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAAT 9181 | ||||||||||| || | || |||||||| || | |||| ||| | || | Sbjct 1255123 GGTTTTGGTACTGAAATTGTTGGCTGAAAAGCAGTTCTGGGTCAAACTTCAGTTTGAAGT 1255064 Query 9182 GGTAGCCGCT 9191 | |||||||| Sbjct 1255063 GATAGCCGCT 1255054 >seq302530 Length=775761 Score = 116 bits (128), Expect = 5e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 ||||| || | || |||| || || || || ||||| |||||||||||| | || || Sbjct 38800 TTGACAATGCTAAAGCCCATCTCACCACCAAATGTGCTCGGCTTCCAGTACTCTGGAGAA 38859 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 |||||| ||| ||| ||| || |||||||| || |||||||| | ||| | || ||| Sbjct 38860 CAGATGGGGTTTCCCAGGAGACCCTTGAGGGAAAAGGGAGCCCCGATCTCTATCATACTC 38919 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || || ||||||| ||| || || |||||| | | | || | || | ||||| Sbjct 38920 TCCCCAAAGATGGAGTTCGGTAGGCACTTTTCAAGAAGCAGCCCCGGATAGAACTCCAAG 38979 Query 8531 GCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || |||| |||||| || || || || || | || |||||||| |||||| Sbjct 38980 GCATCGATGTCTCCATATAGCTCCTCCAGCTCCACTGCCATCTCCTTCTCTCCT 39033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 713855262858560