Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq544 91.5 3e-13 seq787 89.7 1e-12 seq635 89.7 1e-12 seq445 89.7 1e-12 >seq544 Length=1303388 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 41467 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 41408 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 41407 CCCCACGTTGGGC 41395 >seq787 Length=392654 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 270749 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 270808 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 270809 CCCACGTTGGGC 270820 >seq635 Length=868088 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 94058 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 94117 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 94118 CCCACGTTGGGC 94129 >seq445 Length=3673580 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 3238545 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3238486 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3238485 CCCACGCTGGGC 3238474 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 3243959 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3244018 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3244019 CCCACGTTGGGC 3244030 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 3265064 GCCCAGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3265123 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3265124 CCCACGTTGGGC 3265135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057727012084280