Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq526 224 1e-53 seq630 219 4e-52 seq2 102 8e-17 >seq526 Length=1402496 Score = 224 bits (248), Expect = 1e-53 Identities = 494/734 (67%), Gaps = 10/734 (1%) Strand=Plus/Plus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 || ||||| || || || |||| || | || || || |||||||| || || || || Sbjct 113382 ACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGT 113441 Query 16724 GATATATTCTCCATGAAATCAAAAGGATT-AGTA-GCTGAAAATATTTTAGAGTACCCCA 16781 || ||||||||||| || ||||| ||||| || ||||||| || | | |||| Sbjct 113442 GAAATATTCTCCATAAAGTCAAATGGATTCTCTATTCTGAAAACCTTGCTAA--AACCCA 113499 Query 16782 GTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCA 16841 |||| || ||| || || ||||| || || ||||| ||||| ||| |||| Sbjct 113500 GTTCCAGCAT--GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCA 113557 Query 16842 TTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTT 16901 | || || || || || | || || || | ||| ||| ||||| ||| || | Sbjct 113558 TCCCAATGAGCTCCACAGGCAAGGCCTCAGTAAGAAACTCTTGTTCTATCCGAACAGCAT 113617 Query 16902 CCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCA 16961 || | || |||| ||||| || ||| | ||| || ||||| ||||||| Sbjct 113618 TGATAGTTATTTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTAGGTGTTTGAACATCA 113677 Query 16962 GACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCA 17021 | || || |||| | ||||| ||||| |||||||| | ||| || | ||||||||| | Sbjct 113678 GGCAAGCAAAATGTGAGTGTAAACCCTCATCTCTGCTAAAAAGGTCATGAGAAAATGTGA 113737 Query 17022 ACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGA 17081 || |||||| ||||| |||||| | ||| ||||| | || || || ||||||||| Sbjct 113738 GGCCAGGCATCAGTCCTCATTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGT 113797 Query 17082 ATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTAC 17141 | || || || || | ||||| || | | ||||| | || || || ||||||| | Sbjct 113798 AGATGCCTTCCACTGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCTCTTTGTCCC 113857 Query 17142 GAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCT 17201 |||||| | |||| || || || | || | ||| ||||||||| ||||| | Sbjct 113858 CAATCCAGCGCAAGGCCCAATCTGCCTTCTTGTTGACACAAGGCATCGTTTCAATGGCAT 113917 Query 17202 T--AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTA 17259 | | | || ||| | |||| | | || |||| || || ||||| || || | || Sbjct 113918 TGAAGAGAAATTCCC--TTTCATTGGGATCTTTTATGTAAGTGTCGATAAGGAGACCATA 113975 Query 17260 CATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGC 17319 |||||| || |||||||| |||||||| || || || || || || || | | |||| | Sbjct 113976 CATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGCCTTCTGT 114035 Query 17320 TATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGC 17379 || |||| ||| | ||||| ||| | | ||||| || || ||||| || || || Sbjct 114036 AATCTGAAGTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGC 114095 Query 17380 GGCGAAAAACGCCA 17393 || | || |||| Sbjct 114096 TGCAAGGAAAGCCA 114109 >seq630 Length=879232 Score = 219 bits (242), Expect = 4e-52 Identities = 474/700 (68%), Gaps = 17/700 (2%) Strand=Plus/Plus Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTA 16753 || || || |||||| | || || || || | ||||||||||| || ||||| ||||| Sbjct 417558 TTCTCAAAGAAGTTAATCTTTCCTTCCAGTGGAATATTCTCCATAAAGTCAAATGGATTC 417617 Query 16754 G-TAG-CTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATT 16811 || ||||||| || | | |||||||| || | ||| || || ||||| | Sbjct 417618 TCTACTCTGAAAACCTTGCTAA--AACCCAGTTCCAGCATAAGTCTGTCTGCCACAAACT 417675 Query 16812 CTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGG-AAGAGCTTCC 16870 | || ||||| ||||| ||| ||||| || || || || || |||| || | Sbjct 417676 CAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCAAGATCT-CA 417734 Query 16871 GTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCTCG 16930 || | || || ||||| ||| || | |||| || ||| ||| Sbjct 417735 GTGAGGAACTCCTGTTCTATCCGAACAGCATTGATAATTATTTCTCTTTCTCCCGGCTCT 417794 Query 16931 GACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCG 16990 || ||| | ||| || |||| |||||||| || || ||||| || ||||| ||||| Sbjct 417795 GATGGTTTGTGTACTAGGTGTTGGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCA 417854 Query 16991 TCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAAC 17050 |||||||| | |||||| ||||||||||| | || |||||| |||||||||||| | | Sbjct 417855 TCTCTGCTAAAAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTAAGC 417914 Query 17051 CAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATT 17110 || ||||| | || || || ||||||||||| | || || || | ||||| || Sbjct 417915 CAGAATATGGAAGCTAAAGAACCAGAAAAGAAGACGCCTTCCACTGCAGCAAAGGC---- 417970 Query 17111 AATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTT 17170 |||| | || || || ||||||| | |||||| | ||| || || || Sbjct 417971 ---AGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCGGTCTGCCTTC 418027 Query 17171 TGCTTTATGCAATCCATCGTTTCTATGGCCTT--AAATAATTTCTCTTTTTCCTGTAGGT 17228 | ||| | ||| ||||||||| ||||| || | | || ||| | ||| ||| | | Sbjct 418028 TTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTC-CCTTTCGCTG-GGAT 418085 Query 17229 CGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTA 17288 | |||||||||| || | || || || |||||||| || |||||||| |||||| | | Sbjct 418086 CTTTTATATACGTGTCAGTAAGGAGACTATACATTTCAGAATGTATGTTGTCCATGCCAA 418145 Query 17289 TCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCG 17348 | || ||||| || || || ||||| || | || |||||||| | ||||| ||| Sbjct 418146 TTTGGAATCCATAGAAACAGCGGGCCTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCA 418205 Query 17349 CTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAA 17388 | | ||||| || || |||||||| || || || || || Sbjct 418206 CCAAGTTTTCATTTACTATGCCGTCACTTGCTGCAAAGAA 418245 >seq2 Length=18007423 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| |||||||| ||||||||||| | || |||||| ||||||||||| Sbjct 1941489 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 1941430 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||| | || || || ||||||||||| || || || || | ||||| | Sbjct 1941429 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCAAAGG 1941370 Query 17106 C 17106 | Sbjct 1941369 C 1941369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517499305546080