Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq526 224 1e-53
seq630 219 4e-52
seq2 102 8e-17
>seq526
Length=1402496
Score = 224 bits (248), Expect = 1e-53
Identities = 494/734 (67%), Gaps = 10/734 (1%)
Strand=Plus/Plus
Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723
|| ||||| || || || |||| || | || || || |||||||| || || || ||
Sbjct 113382 ACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGT 113441
Query 16724 GATATATTCTCCATGAAATCAAAAGGATT-AGTA-GCTGAAAATATTTTAGAGTACCCCA 16781
|| ||||||||||| || ||||| ||||| || ||||||| || | | ||||
Sbjct 113442 GAAATATTCTCCATAAAGTCAAATGGATTCTCTATTCTGAAAACCTTGCTAA--AACCCA 113499
Query 16782 GTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCA 16841
|||| || ||| || || ||||| || || ||||| ||||| ||| ||||
Sbjct 113500 GTTCCAGCAT--GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCA 113557
Query 16842 TTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTT 16901
| || || || || || | || || || | ||| ||| ||||| ||| || |
Sbjct 113558 TCCCAATGAGCTCCACAGGCAAGGCCTCAGTAAGAAACTCTTGTTCTATCCGAACAGCAT 113617
Query 16902 CCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCA 16961
|| | || |||| ||||| || ||| | ||| || ||||| |||||||
Sbjct 113618 TGATAGTTATTTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTAGGTGTTTGAACATCA 113677
Query 16962 GACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCA 17021
| || || |||| | ||||| ||||| |||||||| | ||| || | ||||||||| |
Sbjct 113678 GGCAAGCAAAATGTGAGTGTAAACCCTCATCTCTGCTAAAAAGGTCATGAGAAAATGTGA 113737
Query 17022 ACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGA 17081
|| |||||| ||||| |||||| | ||| ||||| | || || || |||||||||
Sbjct 113738 GGCCAGGCATCAGTCCTCATTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGT 113797
Query 17082 ATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTAC 17141
| || || || || | ||||| || | | ||||| | || || || ||||||| |
Sbjct 113798 AGATGCCTTCCACTGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCTCTTTGTCCC 113857
Query 17142 GAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCT 17201
|||||| | |||| || || || | || | ||| ||||||||| ||||| |
Sbjct 113858 CAATCCAGCGCAAGGCCCAATCTGCCTTCTTGTTGACACAAGGCATCGTTTCAATGGCAT 113917
Query 17202 T--AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTA 17259
| | | || ||| | |||| | | || |||| || || ||||| || || | ||
Sbjct 113918 TGAAGAGAAATTCCC--TTTCATTGGGATCTTTTATGTAAGTGTCGATAAGGAGACCATA 113975
Query 17260 CATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGC 17319
|||||| || |||||||| |||||||| || || || || || || || | | |||| |
Sbjct 113976 CATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGCCTTCTGT 114035
Query 17320 TATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGC 17379
|| |||| ||| | ||||| ||| | | ||||| || || ||||| || || ||
Sbjct 114036 AATCTGAAGTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGC 114095
Query 17380 GGCGAAAAACGCCA 17393
|| | || ||||
Sbjct 114096 TGCAAGGAAAGCCA 114109
>seq630
Length=879232
Score = 219 bits (242), Expect = 4e-52
Identities = 474/700 (68%), Gaps = 17/700 (2%)
Strand=Plus/Plus
Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTA 16753
|| || || |||||| | || || || || | ||||||||||| || ||||| |||||
Sbjct 417558 TTCTCAAAGAAGTTAATCTTTCCTTCCAGTGGAATATTCTCCATAAAGTCAAATGGATTC 417617
Query 16754 G-TAG-CTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATT 16811
|| ||||||| || | | |||||||| || | ||| || || ||||| |
Sbjct 417618 TCTACTCTGAAAACCTTGCTAA--AACCCAGTTCCAGCATAAGTCTGTCTGCCACAAACT 417675
Query 16812 CTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGG-AAGAGCTTCC 16870
| || ||||| ||||| ||| ||||| || || || || || |||| || |
Sbjct 417676 CAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCAAGATCT-CA 417734
Query 16871 GTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCTCG 16930
|| | || || ||||| ||| || | |||| || ||| |||
Sbjct 417735 GTGAGGAACTCCTGTTCTATCCGAACAGCATTGATAATTATTTCTCTTTCTCCCGGCTCT 417794
Query 16931 GACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCG 16990
|| ||| | ||| || |||| |||||||| || || ||||| || ||||| |||||
Sbjct 417795 GATGGTTTGTGTACTAGGTGTTGGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCA 417854
Query 16991 TCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAAC 17050
|||||||| | |||||| ||||||||||| | || |||||| |||||||||||| | |
Sbjct 417855 TCTCTGCTAAAAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTAAGC 417914
Query 17051 CAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATT 17110
|| ||||| | || || || ||||||||||| | || || || | ||||| ||
Sbjct 417915 CAGAATATGGAAGCTAAAGAACCAGAAAAGAAGACGCCTTCCACTGCAGCAAAGGC---- 417970
Query 17111 AATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTT 17170
|||| | || || || ||||||| | |||||| | ||| || || ||
Sbjct 417971 ---AGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCGGTCTGCCTTC 418027
Query 17171 TGCTTTATGCAATCCATCGTTTCTATGGCCTT--AAATAATTTCTCTTTTTCCTGTAGGT 17228
| ||| | ||| ||||||||| ||||| || | | || ||| | ||| ||| | |
Sbjct 418028 TTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTC-CCTTTCGCTG-GGAT 418085
Query 17229 CGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTA 17288
| |||||||||| || | || || || |||||||| || |||||||| |||||| | |
Sbjct 418086 CTTTTATATACGTGTCAGTAAGGAGACTATACATTTCAGAATGTATGTTGTCCATGCCAA 418145
Query 17289 TCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCG 17348
| || ||||| || || || ||||| || | || |||||||| | ||||| |||
Sbjct 418146 TTTGGAATCCATAGAAACAGCGGGCCTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCA 418205
Query 17349 CTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAA 17388
| | ||||| || || |||||||| || || || || ||
Sbjct 418206 CCAAGTTTTCATTTACTATGCCGTCACTTGCTGCAAAGAA 418245
>seq2
Length=18007423
Score = 102 bits (112), Expect = 8e-17
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045
|||| |||||||| |||||||| ||||||||||| | || |||||| |||||||||||
Sbjct 1941489 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 1941430
Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105
| | ||| ||||| | || || || ||||||||||| || || || || | ||||| |
Sbjct 1941429 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCAAAGG 1941370
Query 17106 C 17106
|
Sbjct 1941369 C 1941369
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517499305546080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |