Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq630 259 5e-64 seq526 235 6e-57 seq57 93.3 4e-14 seq2 89.7 5e-13 seq867 84.2 2e-11 >seq630 Length=879232 Score = 259 bits (286), Expect = 5e-64 Identities = 484/701 (69%), Gaps = 19/701 (3%) Strand=Plus/Plus Query 15932 TTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTA 15991 || || ||||||||| | ||||| || | | ||||| |||||||| ||||| ||||| Sbjct 417558 TTCTCAAAGAAGTTAATCTTTCCTTCCAGTGGAATATTCTCCATAAAGTCAAATGGATTC 417617 Query 15992 G-TAG-CTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATT 16049 || ||||||| ||| | ||||||||| | | ||| ||||| ||||| | Sbjct 417618 TCTACTCTGAAAAC--CTTGCTAAAACCCAGTTCCAGCATAAGTCTGTCTGCCACAAACT 417675 Query 16050 CTATATATTGACACATTA-AGTCGCAATTAATTCCTATAAGTCGTACCGG-AAGAGCTTT 16107 | || ||||| ||||| ||| |||||| || || || || || || |||| || Sbjct 417676 CAATGTATTGCTTCATTAGAGT-GCAATTCATCCCAATGAGCTTCACAGGCAAGATCTCA 417734 Query 16108 TGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTC 16167 || | || | ||||||||| ||| || | |||| || || | ||| | || Sbjct 417735 -GTGAGGAACTCCTGTTCTATCCGAACAGCATTGATAATTATTTCTCTTTCTCCCGGCTC 417793 Query 16168 AGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTC 16227 || ||| | || |||||||| ||||| || || || || || || |||| || || Sbjct 417794 TGATGGTTTGTGTACTAGGTGTTGGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTC 417853 Query 16228 GTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAA 16287 |||||||| | |||||| || ||||| || | || ||||| |||||||||||| | Sbjct 417854 ATCTCTGCTAAAAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTAAG 417913 Query 16288 CCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGAT 16347 ||||||||| | ||| || || || |||||||| | || || || | ||||| || Sbjct 417914 CCAGAATATGGAAGCTAAAGAACCAGAAAAGAAGACGCCTTCCACTGCAGCAAAGGCA-- 417971 Query 16348 TAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTT 16407 |||| | || ||||| ||||| | | |||||| | ||| || || || Sbjct 417972 -----GTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCGGTCTGCCTT 418026 Query 16408 TTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACA--ATTTCTCTTTTTCCTGAATA 16465 | || | |||| ||||||||| ||||| || || | | ||| |||| | | || Sbjct 418027 CTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTCCCTTTCGCTGGGATC 418086 Query 16466 TCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCT 16525 | |||||||||| ||| | || | ||| |||||||| || |||||||| || ||| | Sbjct 418087 TT--TTATATACGTGTCAGTAAGGAGACTATACATTTCAGAATGTATGTTGTCCATGCCA 418144 Query 16526 ATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCC 16585 || || ||||||||||| || || ||||| | || || ||||| | |||||| ||| Sbjct 418145 ATTTGGAATCCATAGAAACAGCGGGCCTCTGTAATCTGAACTTCTTGGCTAAATCGCTCC 418204 Query 16586 GCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAA 16626 ||| ||| ||||| || || ||||||||||| ||||| || Sbjct 418205 ACCAAGTTTTCATTTACTATGCCGTCACTTGCTGCAAAGAA 418245 >seq526 Length=1402496 Score = 235 bits (260), Expect = 6e-57 Identities = 501/736 (68%), Gaps = 14/736 (2%) Strand=Plus/Plus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || ||||| || || || || | || | || || ||||||||||| ||||| || | Sbjct 113382 ACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGT 113441 Query 15962 GATATATTTTCCATAAAATCAAAGGGATT-AGTA-GCTGAAAATATCTTAGAGTACCCCA 16019 || ||||| |||||||| ||||| ||||| || |||||| | ||| | |||| Sbjct 113442 GAAATATTCTCCATAAAGTCAAATGGATTCTCTATTCTGAAA--ACCTTGCTAAAACCCA 113499 Query 16020 GTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTA-AGTCGCAATTA 16078 ||||| | | ||| ||||| ||||| || || ||||| ||||| ||| |||||| Sbjct 113500 GTTCC--AGCATGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGT-GCAATTC 113556 Query 16079 ATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCT 16138 || || || || || || | || | || | ||| | |||||||||| ||| || Sbjct 113557 ATCCCAATGAGCTCCACAGGCAAGGCCTCAGTAAGAAACTCTTGTTCTATCCGAACAGCA 113616 Query 16139 TCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATT 16198 | || | || || | ||| || || ||| | || ||||||||| ||||| Sbjct 113617 TTGATAGTTATTTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTAGGTGTTTGAACATC 113676 Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || || || | | |||| || || |||||||| | ||| || | ||||| || Sbjct 113677 AGGCAAGCAAAATGTGAGTGTAAACCCTCATCTCTGCTAAAAAGGTCATGAGAAAATGTG 113736 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | || ||||| ||||| |||||| | ||||||||| | ||||| || || |||||| Sbjct 113737 AGGCCAGGCATCAGTCCTCATTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAG 113796 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378 | || || || || | ||||| || | | ||||| | || ||||| ||||| | Sbjct 113797 TAGATGCCTTCCACTGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCTCTTTGTCC 113856 Query 16379 CGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCC 16438 | |||||| | |||| || || || | || | |||| ||||||||| ||||| Sbjct 113857 CCAATCCAGCGCAAGGCCCAATCTGCCTTCTTGTTGACACAAGGCATCGTTTCAATGGCA 113916 Query 16439 TT--AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGT 16496 || | | || ||| | |||| | ||| |||| || || || || || | || | Sbjct 113917 TTGAAGAGAAATTCCC--TTTCATTGGGATCTTTTATGTAAGTGTCGATAAGGAGACCAT 113974 Query 16497 ACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCC-TCC 16555 ||||||| || |||||||| || ||||| || || || |||||||| || | |||| || Sbjct 113975 ACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGC-AGCCTTCT 114033 Query 16556 GCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTT 16615 | || || | ||| | |||||| ||| ||| ||| ||||| || || || |||||| Sbjct 114034 GTAATCTGAAGTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTT 114093 Query 16616 GCAGCAAAAAACGCCA 16631 || |||| || |||| Sbjct 114094 GCTGCAAGGAAAGCCA 114109 >seq57 Length=8566406 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| |||||||| || | |||||||| |||| |||| Sbjct 1418655 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCTGGCATAAGACCTCTCTTCT 1418714 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || || || ||||| | || || |||| || || | Sbjct 1418715 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCGAAGG 1418774 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 1418775 CCACCACTCTTTCC 1418788 >seq2 Length=18007423 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| || ||||| || | || ||||| |||||||||||| Sbjct 1941487 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 1941428 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||| | ||||| || || |||||||| || || || || | ||||| || Sbjct 1941427 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCAAAGGC 1941369 >seq867 Length=266704 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/191 (72%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || ||||| || || || |||| || | ||||| ||||||||||| ||||| || | Sbjct 180881 ACTCCCATCCTCTGATACTCACCTACTCTCTTTTCAAAGAAGTTAGTCTTTCCTTCCAGT 180822 Query 15962 GATATATTTTCCATAAAATCAAAGGGATT-AGTA-GCTGAAAATATCTTAGAGTACCCCA 16019 || ||||| |||||||| ||||| ||||| || |||||| | ||| | ||| Sbjct 180821 GAAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAA--ACCTTGCTAAAACCCG 180764 Query 16020 GTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTA-AGTCGCAATTA 16078 |||| | | ||||||||| ||||| || || ||||| ||||| ||| |||||| Sbjct 180763 ATTCCAGCATAAGTCTATCTGCCACAAACTCAATGTATTGCTTCATTAGAGT-GCAATTC 180705 Query 16079 ATTCCTATAAG 16089 ||||| || || Sbjct 180704 ATTCCGATGAG 180694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511368653981920