Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq630 259 5e-64
seq526 235 6e-57
seq57 93.3 4e-14
seq2 89.7 5e-13
seq867 84.2 2e-11
>seq630
Length=879232
Score = 259 bits (286), Expect = 5e-64
Identities = 484/701 (69%), Gaps = 19/701 (3%)
Strand=Plus/Plus
Query 15932 TTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTA 15991
|| || ||||||||| | ||||| || | | ||||| |||||||| ||||| |||||
Sbjct 417558 TTCTCAAAGAAGTTAATCTTTCCTTCCAGTGGAATATTCTCCATAAAGTCAAATGGATTC 417617
Query 15992 G-TAG-CTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATT 16049
|| ||||||| ||| | ||||||||| | | ||| ||||| ||||| |
Sbjct 417618 TCTACTCTGAAAAC--CTTGCTAAAACCCAGTTCCAGCATAAGTCTGTCTGCCACAAACT 417675
Query 16050 CTATATATTGACACATTA-AGTCGCAATTAATTCCTATAAGTCGTACCGG-AAGAGCTTT 16107
| || ||||| ||||| ||| |||||| || || || || || || |||| ||
Sbjct 417676 CAATGTATTGCTTCATTAGAGT-GCAATTCATCCCAATGAGCTTCACAGGCAAGATCTCA 417734
Query 16108 TGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTC 16167
|| | || | ||||||||| ||| || | |||| || || | ||| | ||
Sbjct 417735 -GTGAGGAACTCCTGTTCTATCCGAACAGCATTGATAATTATTTCTCTTTCTCCCGGCTC 417793
Query 16168 AGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTC 16227
|| ||| | || |||||||| ||||| || || || || || || |||| || ||
Sbjct 417794 TGATGGTTTGTGTACTAGGTGTTGGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTC 417853
Query 16228 GTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAA 16287
|||||||| | |||||| || ||||| || | || ||||| |||||||||||| |
Sbjct 417854 ATCTCTGCTAAAAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTAAG 417913
Query 16288 CCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGAT 16347
||||||||| | ||| || || || |||||||| | || || || | ||||| ||
Sbjct 417914 CCAGAATATGGAAGCTAAAGAACCAGAAAAGAAGACGCCTTCCACTGCAGCAAAGGCA-- 417971
Query 16348 TAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTT 16407
|||| | || ||||| ||||| | | |||||| | ||| || || ||
Sbjct 417972 -----GTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCGGTCTGCCTT 418026
Query 16408 TTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACA--ATTTCTCTTTTTCCTGAATA 16465
| || | |||| ||||||||| ||||| || || | | ||| |||| | | ||
Sbjct 418027 CTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTCCCTTTCGCTGGGATC 418086
Query 16466 TCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCT 16525
| |||||||||| ||| | || | ||| |||||||| || |||||||| || ||| |
Sbjct 418087 TT--TTATATACGTGTCAGTAAGGAGACTATACATTTCAGAATGTATGTTGTCCATGCCA 418144
Query 16526 ATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCC 16585
|| || ||||||||||| || || ||||| | || || ||||| | |||||| |||
Sbjct 418145 ATTTGGAATCCATAGAAACAGCGGGCCTCTGTAATCTGAACTTCTTGGCTAAATCGCTCC 418204
Query 16586 GCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAA 16626
||| ||| ||||| || || ||||||||||| ||||| ||
Sbjct 418205 ACCAAGTTTTCATTTACTATGCCGTCACTTGCTGCAAAGAA 418245
>seq526
Length=1402496
Score = 235 bits (260), Expect = 6e-57
Identities = 501/736 (68%), Gaps = 14/736 (2%)
Strand=Plus/Plus
Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961
|| ||||| || || || || | || | || || ||||||||||| ||||| || |
Sbjct 113382 ACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGT 113441
Query 15962 GATATATTTTCCATAAAATCAAAGGGATT-AGTA-GCTGAAAATATCTTAGAGTACCCCA 16019
|| ||||| |||||||| ||||| ||||| || |||||| | ||| | ||||
Sbjct 113442 GAAATATTCTCCATAAAGTCAAATGGATTCTCTATTCTGAAA--ACCTTGCTAAAACCCA 113499
Query 16020 GTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTA-AGTCGCAATTA 16078
||||| | | ||| ||||| ||||| || || ||||| ||||| ||| ||||||
Sbjct 113500 GTTCC--AGCATGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGT-GCAATTC 113556
Query 16079 ATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCT 16138
|| || || || || || | || | || | ||| | |||||||||| ||| ||
Sbjct 113557 ATCCCAATGAGCTCCACAGGCAAGGCCTCAGTAAGAAACTCTTGTTCTATCCGAACAGCA 113616
Query 16139 TCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATT 16198
| || | || || | ||| || || ||| | || ||||||||| |||||
Sbjct 113617 TTGATAGTTATTTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTAGGTGTTTGAACATC 113676
Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258
|| || || || | | |||| || || |||||||| | ||| || | ||||| ||
Sbjct 113677 AGGCAAGCAAAATGTGAGTGTAAACCCTCATCTCTGCTAAAAAGGTCATGAGAAAATGTG 113736
Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318
| || ||||| ||||| |||||| | ||||||||| | ||||| || || ||||||
Sbjct 113737 AGGCCAGGCATCAGTCCTCATTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAG 113796
Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378
| || || || || | ||||| || | | ||||| | || ||||| ||||| |
Sbjct 113797 TAGATGCCTTCCACTGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCTCTTTGTCC 113856
Query 16379 CGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCC 16438
| |||||| | |||| || || || | || | |||| ||||||||| |||||
Sbjct 113857 CCAATCCAGCGCAAGGCCCAATCTGCCTTCTTGTTGACACAAGGCATCGTTTCAATGGCA 113916
Query 16439 TT--AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGT 16496
|| | | || ||| | |||| | ||| |||| || || || || || | || |
Sbjct 113917 TTGAAGAGAAATTCCC--TTTCATTGGGATCTTTTATGTAAGTGTCGATAAGGAGACCAT 113974
Query 16497 ACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCC-TCC 16555
||||||| || |||||||| || ||||| || || || |||||||| || | |||| ||
Sbjct 113975 ACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGC-AGCCTTCT 114033
Query 16556 GCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTT 16615
| || || | ||| | |||||| ||| ||| ||| ||||| || || || ||||||
Sbjct 114034 GTAATCTGAAGTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTT 114093
Query 16616 GCAGCAAAAAACGCCA 16631
|| |||| || ||||
Sbjct 114094 GCTGCAAGGAAAGCCA 114109
>seq57
Length=8566406
Score = 93.3 bits (102), Expect = 4e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283
|||| ||||||||||| ||||| |||||||| || | |||||||| |||| ||||
Sbjct 1418655 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCTGGCATAAGACCTCTCTTCT 1418714
Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343
||| ||||||||| |||||||| || || || ||||| | || || |||| || || |
Sbjct 1418715 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCGAAGG 1418774
Query 16344 CGATTAATCGTTCC 16357
| | | || ||||
Sbjct 1418775 CCACCACTCTTTCC 1418788
>seq2
Length=18007423
Score = 89.7 bits (98), Expect = 5e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285
|| |||||||| |||||||| || ||||| || | || ||||| ||||||||||||
Sbjct 1941487 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 1941428
Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344
| ||||||||| | ||||| || || |||||||| || || || || | ||||| ||
Sbjct 1941427 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCAAAGGC 1941369
>seq867
Length=266704
Score = 84.2 bits (92), Expect = 2e-11
Identities = 137/191 (72%), Gaps = 6/191 (3%)
Strand=Plus/Minus
Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961
|| ||||| || || || |||| || | ||||| ||||||||||| ||||| || |
Sbjct 180881 ACTCCCATCCTCTGATACTCACCTACTCTCTTTTCAAAGAAGTTAGTCTTTCCTTCCAGT 180822
Query 15962 GATATATTTTCCATAAAATCAAAGGGATT-AGTA-GCTGAAAATATCTTAGAGTACCCCA 16019
|| ||||| |||||||| ||||| ||||| || |||||| | ||| | |||
Sbjct 180821 GAAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAA--ACCTTGCTAAAACCCG 180764
Query 16020 GTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTA-AGTCGCAATTA 16078
|||| | | ||||||||| ||||| || || ||||| ||||| ||| ||||||
Sbjct 180763 ATTCCAGCATAAGTCTATCTGCCACAAACTCAATGTATTGCTTCATTAGAGT-GCAATTC 180705
Query 16079 ATTCCTATAAG 16089
||||| || ||
Sbjct 180704 ATTCCGATGAG 180694
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511368653981920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |