Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq599 215 4e-51 seq13 98.7 8e-16 >seq599 Length=1005688 Score = 215 bits (238), Expect = 4e-51 Identities = 531/801 (66%), Gaps = 6/801 (1%) Strand=Plus/Plus Query 18548 CGATCGAACAGGAATCGGAACGTTATCTTTATTTGGAATGCAAGCTCGATACAATTTGCG 18607 |||||| || || | ||| || | || | || || ||||| || || |||| || | Sbjct 753891 CGATCGCACCGGCACCGGGACCCTGTCGGTGTTCGGCATGCAGGCGCGCTACAGCCTGAG 753950 Query 18608 AAATGAATTTCCTCTTTTAACTACAAAGCGT-GTTTTTTGGAGGGCCGTCGTGGAAGAGT 18666 | ||||||||||||| | || || || ||| || || |||| || || |||| |||| Sbjct 753951 AGATGAATTTCCTCTGCTGACAACCAAACGTTGTGTTCTGGAAGGGTGTTTTGGAGGAGT 754010 Query 18667 TGTTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACACA 18726 || | || |||||| || | | | | ||||| || | | || | | | | Sbjct 754011 TGCTGTGCTTTATCAAGGGACCCAGAAAG-CTAAAGAGCTGTCTTCCAAGGGAGTGAAAA 754069 Query 18727 TATGGGATATATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACACA 18786 | |||||| | ||||| | | ||||| |||| || ||| ||| | Sbjct 754070 TCTGGGATGCCAATGGATCCCGAGACTTTCTGGATAGCTTGGGATTCTCCGCCAGAGAAG 754129 Query 18787 CGGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAG 18846 |||||| | ||||| |||| |||||||||||||| |||||||| || ||||| | || Sbjct 754130 AAGGGGACTTGGGCCCAGTTTATGGCTTCCAGTGGAGGCATTTTGGGGCAGAATACAGAG 754189 Query 18847 ACTGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAA 18906 | | ||| | |||| | |||||| | || || || |||| || | || || | Sbjct 754190 ATATGGATTCAGATTATTCAGGACAAGGAGTTGACCAACTACAAAGAGTGACTGACACCA 754249 Query 18907 TTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCC 18966 | ||||| ||||| || | || |||| || || | |||||||||||| ||| | | Sbjct 754250 TCAAAACCAACCCTGATGACAGAAGAATCATCATGTGCGCTTGGAATCCAAGAGATCTTC 754309 Query 18967 CCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAAT 19026 | | |||| || |||||||| || | | || ||||| |||| | || ||||| Sbjct 754310 CTCTGATGGCGCTGCCTCCATGCCATGCCCTCTGCCAGTTCTACGAGGTGAATGGTGAGC 754369 Query 19027 TATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTG 19086 | |||||||| | |||||||||| || || |||||||| || || || ||||||| | Sbjct 754370 TGTCCTGCCAGCTGCACCAGAGATCAGGAGACATGGGCCTAGGTGTGCCTTTCAACACCG 754429 Query 19087 CTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATT 19146 | | || | | || || ||| | | ||||| | || || || || | || || | Sbjct 754430 CCAGCTACACCTTGCTCACGTACGTGATCGCGCACATCACGGGCCTGAAGCCAGGTGACT 754489 Query 19147 TAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGC 19206 | | ||||| |||| ||||| ||||||||| ||||||| || | | | ||| | | Sbjct 754490 TTGTACATACTTTGGGAGATGCCCATATTTACCTGAATCACATCAAGCCACTGAAAATTC 754549 Query 19207 AGCT--AGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACAGA 19264 |||| ||| || ||| | |||||| || || || ||| ||||| | || | Sbjct 754550 AGCTTCAGCGAGAACCC--AGACCTTTCCCAAAGCTCAAGATTCTTCGACAAGTTGAGAA 754607 Query 19265 TATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccccT 19324 || | ||||| ||| || || ||| || |||| || | ||||| || || | | Sbjct 754608 AATTGATGACTTCAAAGCTGAAGACTTTAAGGTTGAAGGGTGCAATCCGCATCCAACTAT 754667 Query 19325 AAAAATGGAAATGGCTCTTTA 19345 ||||||||||||||| |||| Sbjct 754668 TAAAATGGAAATGGCTGTTTA 754688 >seq13 Length=13416947 Score = 98.7 bits (108), Expect = 8e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| || |||||||| || | | || ||||| ||||| | |||||||| | ||| Sbjct 11482356 ATGGCGCTGCCTCCATGCCATGCCCTCTGCCAGTTCTACGTGGTGAACGGTGAGCTGTCC 11482415 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 ||||| | ||||||||||| || || |||||||| || || || ||||||||||| | Sbjct 11482416 TGCCAGCTGTACCAGAGATCAGGAGACATGGGCCTAGGTGTGCCTTTCAACATTGCCAGC 11482475 Query 19092 TATGCACTTCTTACCTACATAGTAGCGCA 19120 || || || || || ||||| | ||||| Sbjct 11482476 TACGCCCTGCTCACGTACATGATCGCGCA 11482504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399469157758020