Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_001348.1
Length=124884
Score E
Sequences producing significant alignments: (Bits) Value
seq599 215 4e-51
seq13 98.7 8e-16
>seq599
Length=1005688
Score = 215 bits (238), Expect = 4e-51
Identities = 531/801 (66%), Gaps = 6/801 (1%)
Strand=Plus/Plus
Query 18548 CGATCGAACAGGAATCGGAACGTTATCTTTATTTGGAATGCAAGCTCGATACAATTTGCG 18607
|||||| || || | ||| || | || | || || ||||| || || |||| || |
Sbjct 753891 CGATCGCACCGGCACCGGGACCCTGTCGGTGTTCGGCATGCAGGCGCGCTACAGCCTGAG 753950
Query 18608 AAATGAATTTCCTCTTTTAACTACAAAGCGT-GTTTTTTGGAGGGCCGTCGTGGAAGAGT 18666
| ||||||||||||| | || || || ||| || || |||| || || |||| ||||
Sbjct 753951 AGATGAATTTCCTCTGCTGACAACCAAACGTTGTGTTCTGGAAGGGTGTTTTGGAGGAGT 754010
Query 18667 TGTTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACACA 18726
|| | || |||||| || | | | | ||||| || | | || | | | |
Sbjct 754011 TGCTGTGCTTTATCAAGGGACCCAGAAAG-CTAAAGAGCTGTCTTCCAAGGGAGTGAAAA 754069
Query 18727 TATGGGATATATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACACA 18786
| |||||| | ||||| | | ||||| |||| || ||| ||| |
Sbjct 754070 TCTGGGATGCCAATGGATCCCGAGACTTTCTGGATAGCTTGGGATTCTCCGCCAGAGAAG 754129
Query 18787 CGGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAG 18846
|||||| | ||||| |||| |||||||||||||| |||||||| || ||||| | ||
Sbjct 754130 AAGGGGACTTGGGCCCAGTTTATGGCTTCCAGTGGAGGCATTTTGGGGCAGAATACAGAG 754189
Query 18847 ACTGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAA 18906
| | ||| | |||| | |||||| | || || || |||| || | || || |
Sbjct 754190 ATATGGATTCAGATTATTCAGGACAAGGAGTTGACCAACTACAAAGAGTGACTGACACCA 754249
Query 18907 TTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCC 18966
| ||||| ||||| || | || |||| || || | |||||||||||| ||| | |
Sbjct 754250 TCAAAACCAACCCTGATGACAGAAGAATCATCATGTGCGCTTGGAATCCAAGAGATCTTC 754309
Query 18967 CCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAAT 19026
| | |||| || |||||||| || | | || ||||| |||| | || |||||
Sbjct 754310 CTCTGATGGCGCTGCCTCCATGCCATGCCCTCTGCCAGTTCTACGAGGTGAATGGTGAGC 754369
Query 19027 TATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTG 19086
| |||||||| | |||||||||| || || |||||||| || || || ||||||| |
Sbjct 754370 TGTCCTGCCAGCTGCACCAGAGATCAGGAGACATGGGCCTAGGTGTGCCTTTCAACACCG 754429
Query 19087 CTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATT 19146
| | || | | || || ||| | | ||||| | || || || || | || || |
Sbjct 754430 CCAGCTACACCTTGCTCACGTACGTGATCGCGCACATCACGGGCCTGAAGCCAGGTGACT 754489
Query 19147 TAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGC 19206
| | ||||| |||| ||||| ||||||||| ||||||| || | | | ||| | |
Sbjct 754490 TTGTACATACTTTGGGAGATGCCCATATTTACCTGAATCACATCAAGCCACTGAAAATTC 754549
Query 19207 AGCT--AGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACAGA 19264
|||| ||| || ||| | |||||| || || || ||| ||||| | || |
Sbjct 754550 AGCTTCAGCGAGAACCC--AGACCTTTCCCAAAGCTCAAGATTCTTCGACAAGTTGAGAA 754607
Query 19265 TATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccccT 19324
|| | ||||| ||| || || ||| || |||| || | ||||| || || | |
Sbjct 754608 AATTGATGACTTCAAAGCTGAAGACTTTAAGGTTGAAGGGTGCAATCCGCATCCAACTAT 754667
Query 19325 AAAAATGGAAATGGCTCTTTA 19345
||||||||||||||| ||||
Sbjct 754668 TAAAATGGAAATGGCTGTTTA 754688
>seq13
Length=13416947
Score = 98.7 bits (108), Expect = 8e-16
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031
|||| || |||||||| || | | || ||||| ||||| | |||||||| | |||
Sbjct 11482356 ATGGCGCTGCCTCCATGCCATGCCCTCTGCCAGTTCTACGTGGTGAACGGTGAGCTGTCC 11482415
Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091
||||| | ||||||||||| || || |||||||| || || || ||||||||||| |
Sbjct 11482416 TGCCAGCTGTACCAGAGATCAGGAGACATGGGCCTAGGTGTGCCTTTCAACATTGCCAGC 11482475
Query 19092 TATGCACTTCTTACCTACATAGTAGCGCA 19120
|| || || || || ||||| | |||||
Sbjct 11482476 TACGCCCTGCTCACGTACATGATCGCGCA 11482504
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399469157758020
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |