Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq9 535 3e-147 seq772 527 4e-145 seq441 358 5e-94 seq37 333 2e-86 seq599 242 3e-59 seq249 212 5e-50 seq143 206 2e-48 seq17 147 2e-30 seq67 105 5e-18 >seq9 Length=13051293 Score = 535 bits (592), Expect = 3e-147 Identities = 466/578 (81%), Gaps = 2/578 (0%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| ||||| ||||||| || ||||||||||||||||||| |||||||||| | |||| Sbjct 8821720 AAAACACATTCATATTAATCATCCTTCTCATATACTTCAAATATGTACTTAATGCCTTTC 8821779 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 || || || ||| || |||||| ||| |||||| || |||||| |||||||| | | Sbjct 8821780 TCCTCCTGGGCATGAGG--GAACACCTGGGTATTCTGGCAGAAGTTTATATTTCTCCAAA 8821837 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134 |||| |||||||||||| |||| || ||||||||| ||||||||||| |||||||||||| Sbjct 8821838 TCAATTTCTGGAAAAAACGTGTGACTTTCAAAGTCCTGCATGATCCTTGTCACAAACAGT 8821897 Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194 ||||||| || ||| | | || ||||| ||||| ||||| | || ||||||||||| Sbjct 8821898 TTAAGATGGCCTGGGTGATCCACGGCTTCCTTATAAACAGAGCGGCCACCAATTATCCAA 8821957 Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAA 4254 | ||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| | | Sbjct 8821958 ATCATGTCTACTTTATTTGCTAATTCTGGTTGTTCAGTAAGTTTTAAGGCATCATCCAGA 8822017 Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACA 4314 || | || | ||||||||||| |||||| | |||| |||||| |||||||||| ||| Sbjct 8822018 CTTCTGGCAAGAAAATGAGCTCCTTGTGGAGGTCCCTTGAGTTCCCTGCTGAGAACTACA 8822077 Query 4315 TTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCC 4374 |||||||| | |||||||| || || ||||||||||| |||||||| ||||| ||||| Sbjct 8822078 TTAATTCTATCCTTTAAAGGTCGATTTTTCTCAGGAATGGAGAACCAGGTCTTCCTACCC 8822137 Query 4375 ATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGT 4434 |||||||| ||||||||||||||| ||| ||||| || || |||||||| ||||||| Sbjct 8822138 ATAATCACCAAATTCTGTTTATCTTCTACTGAAGAGGTTGTGGTCATTCTCTGGAAATAC 8822197 Query 4435 TTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTT 4494 | || | |||| | || ||||| |||| || ||| | |||| ||||||||||| Sbjct 8822198 CTGAATTAATTCCTGAGCGGCGGCCAGGGCAGGTCACCATTCTTGCTGATGCCCATGTTC 8822257 Query 4495 TGAGCTACAGCAACAATGCAGTTTAGTGCTTGAACCAT 4532 || | ||||| || ||||||||||| |||||||| Sbjct 8822258 TGGGACACAGCGACGATGCAGTTTAGCAACTGAACCAT 8822295 >seq772 Length=448342 Score = 527 bits (584), Expect = 4e-145 Identities = 466/582 (80%), Gaps = 0/582 (0%) Strand=Plus/Minus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || ||||||| |||||||||||| |||||||| ||||||||||| | |||| Sbjct 145798 AAAATACTTTCATATTAATCATTCTTCTCATACACTTCAAACTTGTACTTAATGCCTTTC 145739 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 || || || |||| ||| ||||||| ||| |||||| || |||||| |||||||| | | Sbjct 145738 TCCTCCTGGACATCAGAGAGAACACCTGGGTATTCTGGCAGAAGTTTATATTTCTCCAAA 145679 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134 |||| |||||||||||| |||||| ||||||||| |||||||| || |||||||| ||| Sbjct 145678 TCAATTTCTGGAAAAAACATGTCACTTTCAAAGTCCTGCATGATTCTTGTCACAAATAGT 145619 Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194 ||||| | || ||| | | |||| ||||| ||||| |||||||| || |||| |||||| Sbjct 145618 TTAAGGTGGCCTGGGTGATTCATGGCTTCCTTATAAACAGAACTGCCACCAACTATCCAA 145559 Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAA 4254 | ||| ||||||||||||||||||||||| ||||| ||||| ||||| |||||||| | | Sbjct 145558 ATCATATCTACTTTATTTGCTAATTCTGGTTGTTCAGTAAGGTTTAATGCATCATCCAGA 145499 Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACA 4314 || | || | ||||||||||| |||||| | ||||| ||||| |||||||||| | | Sbjct 145498 CTTCTGGCAAGAAAATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAA 145439 Query 4315 TTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCC 4374 |||||||| | |||||||| || |||||||||||||| |||||||| ||||| ||||| Sbjct 145438 TTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCC 145379 Query 4375 ATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGT 4434 |||||||| | |||||||||| || || ||||| | || |||||||| ||||||| Sbjct 145378 ATAATCACCAGATTCTGTTTACCTTCTATTGAAGAGGCTGTCGTCATTCTCTGGAAATAC 145319 Query 4435 TTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTT 4494 | || ||||| | ||| |||||| |||| || || | ||||| || |||||||| Sbjct 145318 CTGAATTCATTTCTGAGTGGTGGCCAGGGCAGGTCTCCCTTCTTGCCGATACCCATGTTC 145259 Query 4495 TGAGCTACAGCAACAATGCAGTTTAGTGCTTGAACCATAATA 4536 || | ||||| |||||||||||||| ||||||| ||| Sbjct 145258 TGGGACACAGCGACAATGCAGTTTAGCAAACGAACCATGATA 145217 >seq441 Length=1771730 Score = 358 bits (396), Expect = 5e-94 Identities = 425/569 (75%), Gaps = 23/569 (4%) Strand=Plus/Minus Query 3956 AAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCT 4015 ||| || || ||||||| ||||| |||||||||||||||||||||| || | ||||| Sbjct 1279382 AAACACCTTCATATTAATCATTCT---CATATACTTCAAATTTGTACTTCATGCCTTTCT 1279326 Query 4016 CTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGAT 4075 | || || |||| ||| ||||||| || |||||| | | |||||||||||||| Sbjct 1279325 CCTCCTGGACATCAGAGAGAACACCCGGGTATTCTGGC-AGAGTTTGTATTTCTC----- 1279272 Query 4076 CAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTT 4135 ||||| | ||| ||| || ||||||||| ||||| ||||| ||| || | | || Sbjct 1279271 CAAATAC----AAACAGG----ACTTTCAAAGTCCTGCATAATCCTTGTCCCATATACTT 1279220 Query 4136 TAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGA 4195 |||||| || ||| | | |||| ||||| | | | |||||||| | |||| |||||| | Sbjct 1279219 TAAGATGGCCTGGGTGATTCATGGCTTCCTGACAAACAGAACTGTCACCAACTATCCAAA 1279160 Query 4196 CCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAAC 4255 || ||||||| ||||||| ||||||| |||| |||| |||||| |||||| | | || Sbjct 1279159 TCACATCTACTTCATTTGCTGATTCTGGTTGTTTAGTAAATTTTAAGGCATCAGCCAGAC 1279100 Query 4256 TCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACAT 4315 | | || | ||||||||| | |||||| | ||||| ||||| | |||||||| | || Sbjct 1279099 TTCTGGCAAGAAAATGAGCCCCTTGTGGAGGTTCCTTGAGTTCTCTCCTGAGAACTAAAT 1279040 Query 4316 TAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTT---TAC 4372 ||||||| ||||||||| || |||||||| ||||| ||||| || ||||| | | | Sbjct 1279039 TAATTCTAGATTTTAAAGGTCGATTCTTCTCGGGAATGGAGAAGCAGGTCTTCTTCCTCC 1278980 Query 4373 CCATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAAT 4432 |||||||||| | |||||||| | || ||| ||||| || || | ||| || ||||||| Sbjct 1278979 CCATAATCACCAGATTCTGTTGACCTTTTACTGAAGAGGTTGTGGCCATCCTCTGGAAAT 1278920 Query 4433 GTTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGT-TTGCCAATG-CCCAT 4490 | || |||||| || |||||| ||| || | ||| | || |||||| ||||| Sbjct 1278919 ACCTGAATTCATTCCCGAGCAGTGGCCAGGGC-AGGTCCCTGATCTTACCAATGCCCCAT 1278861 Query 4491 GTTTTGAGCTACAGCAACAATGCAGTTTA 4519 ||| || | ||||| || |||||| ||| Sbjct 1278860 GTTCTGGGACACAGCGACGATGCAGCTTA 1278832 >seq37 Length=10690711 Score = 333 bits (368), Expect = 2e-86 Identities = 441/607 (73%), Gaps = 14/607 (2%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTA--ATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTT 4012 |||| || ||| ||||| || |||||| | ||| ||||||||||||||||||||||||| Sbjct 7719529 AAAACACTTTTATATTATAATCATTCTTTTAATACACTTCAAATTTGTACTTAATACTTT 7719588 Query 4013 TCTCTTCTTGCACATTAGAAAGAACACTT---GGATATTCTATCAAAAGTTTGTATTTCT 4069 |||| || | ||||| || | ||||| | || |||||| | |||||| ||||||| Sbjct 7719589 TCTCCTCCTTCACATCGGAGACAACACGTTGTGGGTATTCTGGGAGAAGTTTATATTTCT 7719648 Query 4070 CTAGATCAAATTCTG--GAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCAC 4127 ||| ||||| ||||| | || ||| ||| |||||| || |||||||||| ||| | Sbjct 7719649 CTAAATCAACTTCTGACGGGGGAAAGTGCCACTTTCAAAATCCTGCATGATCCATGTCTC 7719708 Query 4128 AAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAAT 4187 ||| ||||| | || | | ||| |||| ||||| || || |||||||| | ||| | Sbjct 7719709 AAATAGTTTTAAATGGTCTCT-TAATTCATGGCTTCCTTCTAAACAGAACTGCTTCCCAC 7719767 Query 4188 TATCCAGACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATC 4247 | | | |||||||||| |||||||| ||||||| | || | ||||||||||| ||||| Sbjct 7719768 TTTGAAAACCATGTCTAGTTTATTTGTTAATTCTAGTTGCCCAGTAAGTTTTAAGGCATC 7719827 Query 4248 ATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAG 4307 || | ||| | || | ||||| |||||| ||||| | ||| | ||||| | ||||| Sbjct 7719828 ATTCAGACTTTAGGCAAGAAAATTAGCTCTTTGTGGTGGTTCCCTGAGTTCTCTACTGAG 7719887 Query 4308 AACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTT 4367 ||| | |||||||||| ||||||| | || | |||| |||||| ||||| ||||| Sbjct 7719888 AACTAAATTAATTCTGTACTTTAAAGATTGATTACTTTCAGTAATTGAAAACCAGGTCTT 7719947 Query 4368 TTTACCCATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTG 4427 ||| |||||| |||| |||||||||| || ||| ||||| || || |||||| |||| Sbjct 7719948 CCTACTCATAATTACTAGATTCTGTTTAACTTCTACTGAAGAGGTTGTGGTCATTTTTTG 7720007 Query 4428 GAAATGTTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCC 4487 ||| || || | ||| | || | || || |||| || || | || | ||||| Sbjct 7720008 GAA----TTGAATTTATTTCTGAGCCAGGGTCAGGGCATGTCCCCATTCCTGACGATGCC 7720063 Query 4488 CATGTTTTGAGCTACAGCAACAATGCAGTTTAGTGCTTGAACCATAATACTA--ACTAAA 4545 ||| || || | | | ||| ||| |||| | |||| ||||| || | | | || Sbjct 7720064 CATCTTCTGGGAAAGTGTGACAGGACAGCTTAGCGGATGAATCATAACACCACCAGTGAA 7720123 Query 4546 GACTTCT 4552 |||||| Sbjct 7720124 CACTTCT 7720130 >seq599 Length=1005688 Score = 242 bits (268), Expect = 3e-59 Identities = 503/740 (68%), Gaps = 8/740 (1%) Strand=Plus/Minus Query 101534 TAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATATAATGTCA 101593 ||||||||||| | ||||||||| | || || || || | ||| | ||| ||| Sbjct 754688 TAAACAGCCATTTCCATTTTAATAGTTGGATGCGGATTGCACCCTTCAACCTTAAAGTCT 754629 Query 101594 TCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACGGT 101653 || ||||| ||||||||||| ||| | || | || | || |||| || ||| Sbjct 754628 TCAGCTTTGAAGTCATCAATTTTCTCAACTTGTCGAAGAATCTTGAGCTTTGGGAAAGGT 754569 Query 101654 CTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGCA 101713 || || |||| | ||| ||||| || | | ||||||| | || || || ||| Sbjct 754568 CTGGGTTCTCGCTGAAGCTGAATTTTCAGTGGCTTGATGTGATTCAGGTAAATATGGGCA 754509 Query 101714 TCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAA 101773 ||||| | |||||| | ||| || || ||| || |||| || || |||| | | Sbjct 754508 TCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGCGCGATCACGTAC 754449 Query 101774 GTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTT 101833 || | | | ||||| || |||| || ||||| |||| ||||| || ||||||| Sbjct 754448 GTGAGCAAGGTGTAGCTGGCGGTGTTGAAAGGCACACCTAGGCCCATGTCTCCTGATCTC 754389 Query 101834 TGATACAGTTGACAGGAAAGCTTTCCAT-CACAGACATAAAATTGACTTAATACATGACA 101892 || | ||| || ||||| |||| |||| ||| | || || || | | |||| || Sbjct 754388 TGGTGCAGCTGGCAGGACAGCTCACCATTCACCT-CGTAGAACTGGCAGAGGGCATGGCA 754330 Query 101893 AGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTCT 101952 || |||| | |||| ||||| ||| ||||||||| ||||| | || ||||| Sbjct 754329 TGGAGGCAGCGCCATCAGAGGAAGATCTCTTGGATTCCAAGCGCACATGATGATTCTTCT 754270 Query 101953 ATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTT-TAATTGGTCAACTCCTTCTC 102011 || |||||| ||||| || || ||| ||| || ||| || |||||||||||||| || Sbjct 754269 GTCATCAGGGTTGGTTTTGATGGTGTCAGTCA-CTCTTTGTAGTTGGTCAACTCCTTGTC 754211 Query 102012 CTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCAT 102071 || |||||| | | | || | |||||||| || |||||||||||||| || |||| Sbjct 754210 CTGAATAATCTGAATCCATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCAT 754151 Query 102072 ACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATC 102131 | || || || | || ||||| |||||| | | || || | |||| | ||| || Sbjct 754150 AAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAAGCTATCCAGAAAGTCTC 754091 Query 102132 TAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTTT-GCTGTCAGTA 102190 |||||||| |||||||| || | ||| || | || |||||||| ||| || | Sbjct 754090 GGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCTTTC--TG 754033 Query 102191 GATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATAC-TCTCTTAGT 102249 | ||| ||||||| |||| || || || | |||||| |||| || || | || || Sbjct 754032 GGTCCCTTGATAAAGCACAGCAACTCCTCCAAAACACCCTTCCAGAACACAACGTTTGGT 753973 Query 102250 AGTTAAAAGTGGAAATTCAT 102269 || | || |||||||||| Sbjct 753972 TGTCAGCAGAGGAAATTCAT 753953 >seq249 Length=3335908 Score = 212 bits (234), Expect = 5e-50 Identities = 192/242 (79%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 26931 AGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGC 26990 |||| |||| | |||| | | |||||||| || ||||| |||||||| || | ||| ||| Sbjct 7354 AGCTCTTAGGCCACATGGCGGACAATGGGGGTGACGCAGGTGCAGCCCACGGACACCAGC 7413 Query 26991 ATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATC 27050 |||||||| |||| || || || | |||| | || || | |||||| || || ||| Sbjct 7414 ATCTTCTCCAGCCGGAAGGAGTTGGTGCAGTGCCGAGGCTCCCTGCGCAGGACCAGGATC 7473 Query 27051 TCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACAT 27110 ||||| ||||| ||||| ||||||||||||||||| || |||||||||||||| || || Sbjct 7474 TCTTGCTGGATGGGGACGGAGTTCATGTGGTAGTCCACGTTCCCATCAGCATTGACGCAG 7533 Query 27111 CCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTG 27170 || |||| ||| ||||| || ||||| ||||||||||||||||| || | || |||||| Sbjct 7534 CCCAAGTGGCGGCACTTCGCCTCCCAGATCACAGAGGGATATCTCTCAGGGTCCTCATTG 7593 Query 27171 CG 27172 || Sbjct 7594 CG 7595 Score = 140 bits (154), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 27174 TGGAGAGTCCAAGGAGACGTAGATCTATTGTAGTAGTCTGAAGCCCTTTTAGAACTAGTA 27233 |||||| ||||||| || | |||| |||||||| ||||| | |||||| ||| | ||| Sbjct 8738 TGGAGATTCCAAGGTGAGGAGGATCGGTTGTAGTAATCTGAGGGCCTTTTGGAATTGGTA 8797 Query 27234 TTCCAGTTACGGATGCTCAAAGTAACCATCACAGACCGTGGAAAGCTATTGTTAGCAGC- 27292 |||| |||||||||| ||| | |||||||||| ||| |||||| | |||| |||| Sbjct 8798 TTCCGGTTACGGATGTTCAGGTTGACCATCACAGTCCGGGGAAAGTTCTTGTCCTCAGCA 8857 Query 27293 --TAAGCATCTTGGGGTTTGTGCGCTTGTTATTTCTGACTTTACTATACAATCTATGCTC 27350 | ||||| |||| |||||| |||||||||| ||| ||| ||| | || | |||| Sbjct 8858 TTTGGGCATCCTGGGTTTTGTGGGCTTGTTATTGCTGCCTTCACTGTCGCCTCCAGGCTC 8917 Query 27351 AGCAGCAGAAG 27361 |||||||| || Sbjct 8918 AGCAGCAGCAG 8928 >seq143 Length=5113317 Score = 206 bits (228), Expect = 2e-48 Identities = 256/348 (74%), Gaps = 33/348 (9%) Strand=Plus/Plus Query 1052 TCTAGCTTTGCTCTCAATGAGCTATAAATAAAAATATAAAATCCACATTGATTACTATAC 1111 || ||| ||||||||||| || || ||||||||||| ||||| |||||||||| ||||| Sbjct 3585021 TCCAGCCTTGCTCTCAATTGGCCATGAATAAAAATATTAAATCAACATTGATTATTATAC 3585080 Query 1112 AAGACAATGAAGATGCTACTCACGTGTGTTATCTACAGTTTAATTATAGATAAAAGACAA 1171 ||||||||||||||||||| | |||||| |||||| |||||| | ||| ||||||||| Sbjct 3585081 CAGACAATGAAGATGCTACTTAAGTGTGTGGTCTACAATTTAATCAGAGAGAAAAGACAA 3585140 Query 1172 ATGATGCTTTACCAACTTAAGAACTACATGACA-TGTGTT---TT-----------CTAG 1216 |||||| || |||||| ||||| |||||| | |||||| || ||| Sbjct 3585141 ATGATGTCCTAACAACTTGAGAACCACATGATACTGTGTTACATTGAATGTTACGGCTAT 3585200 Query 1217 A---TTCTACATGAT---AG-------TAGAATCTTGA-AGCTTTACAGGTCTTCTGTCT 1262 | ||| ||| ||| || |||||| ||| || || || | ||| || Sbjct 3585201 ACAGTTCAACAGGATTCCAGAGAAGGACAGAATCATGAGCCCTATAGAGCCCCTCTTTCC 3585260 Query 1263 AGAAGGCATATAGTAAAGATAAAGCTTATCTAGTGTCTTCAAAAGTAAGTAGTAGAGAAG 1322 |||||||||||| | ||||| |||||| || ||||| ||| || |||| ||||||| Sbjct 3585261 AGAAGGCATATAATGAAGATGAAGCTTGGGCAGGGTCTTGAAAGGTGGGTAGGAGAGAAG 3585320 Query 1323 ACAACATGTAGCATATCACTGAGTAACTTAATTAAGAATACAGAGATA 1370 || |||| ||| || |||||||||| ||||||| ||||||||| Sbjct 3585321 ACGACATCCGGCACATGACTGAGTAAC----TTAAGAACACAGAGATA 3585364 >seq17 Length=12262279 Score = 147 bits (162), Expect = 2e-30 Identities = 108/126 (86%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| || ||||||||||| | ||||||||||||||||||||||||||| Sbjct 1269298 TTATAAACAGAACTGCCACCAATTATCCAAATCATGTCTACTTTATTTGCTAATTCTGGT 1269357 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 ||||| ||||||||||| |||||||| | ||| || || | ||||||||||| |||||| Sbjct 1269358 TGTTCAGTAAGTTTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTTGTGGA 1269417 Query 4285 AGCTCC 4290 | ||| Sbjct 1269418 GGTTCC 1269423 Score = 134 bits (148), Expect = 1e-26 Identities = 95/109 (87%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| |||||| |||||||||| ||||||||||| | |||||||| || ||||||||||| Sbjct 1279977 CTTGAGTTCCCTGCTGAGAACTACATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGG 1280036 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| ||||| ||||||||||||| | ||||||||||||| Sbjct 1280037 AATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTTATCT 1280085 Score = 131 bits (144), Expect = 1e-25 Identities = 118/147 (80%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 4045 TATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCA 4104 || ||| || |||||| |||||||| | ||||| |||||||||||| ||||||| |||| Sbjct 1265087 TACTCTGGCAGAAGTTTATATTTCTCCAAATCAATTTCTGGAAAAAACGTGTCACTTTCA 1265146 Query 4105 AAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCT 4164 ||||| ||||||||||| ||||||||||||||||||| || || | | |||| ||||| Sbjct 1265147 AAGTCCTGCATGATCCTTGTCACAAACAGTTTAAGATGGCCTGAGTGATTCATGGCTTCC 1265206 Query 4165 TTATACACAGAACTACCTCCAATTATC 4191 || | | | ||| || | ||||| || Sbjct 1265207 TTTGAAATAAAACAACAT-CAATTTTC 1265232 Score = 104 bits (114), Expect = 2e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 3941 ACATCTTCACCTGTAAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGT 4000 ||| ||| | || |||| ||||| ||||||| |||||||||||||||||||||||||| Sbjct 1250035 ACAGCTTAAACTAGAAAACACATTCATATTAATCATTCTTCTCATATACTTCAAATTTGT 1250094 Query 4001 ACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAACACTTGGATAT 4047 ||||||| | |||||| || || ||| ||| |||||| ||| ||| Sbjct 1250095 ACTTAATGCCTTTCTCCTCCTGGGCATCAGAGGGAACACCTGGGTAT 1250141 >seq67 Length=7901503 Score = 105 bits (116), Expect = 5e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 29381 GGGTCAGGAGTATATTACAGGTGTTGGAAGTTTGATGACTGTAGCTTTAAACGTATCTCA 29440 |||| | |||||||| || |||||||||||||||| || || | || | || |||||| Sbjct 5219262 GGGTTACGAGTATATAACCGGTGTTGGAAGTTTGAGGATTGCACTTTCAGCCGCATCTCA 5219321 Query 29441 AATCAATTGTCTGAAACACAGTTAAAGTATCATTGTTGTAAGAAGAACTTGTGTAA 29496 || |||||||| |||| ||||||||||||| || || |||||| || ||||||| Sbjct 5219322 AACCAATTGTCGGAAAATGAGTTAAAGTATCACTGCTGCAAGAAGGACCTGTGTAA 5219377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361219693928156