Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq9 535 3e-147
seq772 527 4e-145
seq441 358 5e-94
seq37 333 2e-86
seq599 242 3e-59
seq249 212 5e-50
seq143 206 2e-48
seq17 147 2e-30
seq67 105 5e-18
>seq9
Length=13051293
Score = 535 bits (592), Expect = 3e-147
Identities = 466/578 (81%), Gaps = 2/578 (0%)
Strand=Plus/Plus
Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014
|||| ||||| ||||||| || ||||||||||||||||||| |||||||||| | ||||
Sbjct 8821720 AAAACACATTCATATTAATCATCCTTCTCATATACTTCAAATATGTACTTAATGCCTTTC 8821779
Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074
|| || || ||| || |||||| ||| |||||| || |||||| |||||||| | |
Sbjct 8821780 TCCTCCTGGGCATGAGG--GAACACCTGGGTATTCTGGCAGAAGTTTATATTTCTCCAAA 8821837
Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134
|||| |||||||||||| |||| || ||||||||| ||||||||||| ||||||||||||
Sbjct 8821838 TCAATTTCTGGAAAAAACGTGTGACTTTCAAAGTCCTGCATGATCCTTGTCACAAACAGT 8821897
Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194
||||||| || ||| | | || ||||| ||||| ||||| | || |||||||||||
Sbjct 8821898 TTAAGATGGCCTGGGTGATCCACGGCTTCCTTATAAACAGAGCGGCCACCAATTATCCAA 8821957
Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAA 4254
| ||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| | |
Sbjct 8821958 ATCATGTCTACTTTATTTGCTAATTCTGGTTGTTCAGTAAGTTTTAAGGCATCATCCAGA 8822017
Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACA 4314
|| | || | ||||||||||| |||||| | |||| |||||| |||||||||| |||
Sbjct 8822018 CTTCTGGCAAGAAAATGAGCTCCTTGTGGAGGTCCCTTGAGTTCCCTGCTGAGAACTACA 8822077
Query 4315 TTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCC 4374
|||||||| | |||||||| || || ||||||||||| |||||||| ||||| |||||
Sbjct 8822078 TTAATTCTATCCTTTAAAGGTCGATTTTTCTCAGGAATGGAGAACCAGGTCTTCCTACCC 8822137
Query 4375 ATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGT 4434
|||||||| ||||||||||||||| ||| ||||| || || |||||||| |||||||
Sbjct 8822138 ATAATCACCAAATTCTGTTTATCTTCTACTGAAGAGGTTGTGGTCATTCTCTGGAAATAC 8822197
Query 4435 TTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTT 4494
| || | |||| | || ||||| |||| || ||| | |||| |||||||||||
Sbjct 8822198 CTGAATTAATTCCTGAGCGGCGGCCAGGGCAGGTCACCATTCTTGCTGATGCCCATGTTC 8822257
Query 4495 TGAGCTACAGCAACAATGCAGTTTAGTGCTTGAACCAT 4532
|| | ||||| || ||||||||||| ||||||||
Sbjct 8822258 TGGGACACAGCGACGATGCAGTTTAGCAACTGAACCAT 8822295
>seq772
Length=448342
Score = 527 bits (584), Expect = 4e-145
Identities = 466/582 (80%), Gaps = 0/582 (0%)
Strand=Plus/Minus
Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014
|||| || || ||||||| |||||||||||| |||||||| ||||||||||| | ||||
Sbjct 145798 AAAATACTTTCATATTAATCATTCTTCTCATACACTTCAAACTTGTACTTAATGCCTTTC 145739
Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074
|| || || |||| ||| ||||||| ||| |||||| || |||||| |||||||| | |
Sbjct 145738 TCCTCCTGGACATCAGAGAGAACACCTGGGTATTCTGGCAGAAGTTTATATTTCTCCAAA 145679
Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134
|||| |||||||||||| |||||| ||||||||| |||||||| || |||||||| |||
Sbjct 145678 TCAATTTCTGGAAAAAACATGTCACTTTCAAAGTCCTGCATGATTCTTGTCACAAATAGT 145619
Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194
||||| | || ||| | | |||| ||||| ||||| |||||||| || |||| ||||||
Sbjct 145618 TTAAGGTGGCCTGGGTGATTCATGGCTTCCTTATAAACAGAACTGCCACCAACTATCCAA 145559
Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAA 4254
| ||| ||||||||||||||||||||||| ||||| ||||| ||||| |||||||| | |
Sbjct 145558 ATCATATCTACTTTATTTGCTAATTCTGGTTGTTCAGTAAGGTTTAATGCATCATCCAGA 145499
Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACA 4314
|| | || | ||||||||||| |||||| | ||||| ||||| |||||||||| | |
Sbjct 145498 CTTCTGGCAAGAAAATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAA 145439
Query 4315 TTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCC 4374
|||||||| | |||||||| || |||||||||||||| |||||||| ||||| |||||
Sbjct 145438 TTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCC 145379
Query 4375 ATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGT 4434
|||||||| | |||||||||| || || ||||| | || |||||||| |||||||
Sbjct 145378 ATAATCACCAGATTCTGTTTACCTTCTATTGAAGAGGCTGTCGTCATTCTCTGGAAATAC 145319
Query 4435 TTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTT 4494
| || ||||| | ||| |||||| |||| || || | ||||| || ||||||||
Sbjct 145318 CTGAATTCATTTCTGAGTGGTGGCCAGGGCAGGTCTCCCTTCTTGCCGATACCCATGTTC 145259
Query 4495 TGAGCTACAGCAACAATGCAGTTTAGTGCTTGAACCATAATA 4536
|| | ||||| |||||||||||||| ||||||| |||
Sbjct 145258 TGGGACACAGCGACAATGCAGTTTAGCAAACGAACCATGATA 145217
>seq441
Length=1771730
Score = 358 bits (396), Expect = 5e-94
Identities = 425/569 (75%), Gaps = 23/569 (4%)
Strand=Plus/Minus
Query 3956 AAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCT 4015
||| || || ||||||| ||||| |||||||||||||||||||||| || | |||||
Sbjct 1279382 AAACACCTTCATATTAATCATTCT---CATATACTTCAAATTTGTACTTCATGCCTTTCT 1279326
Query 4016 CTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGAT 4075
| || || |||| ||| ||||||| || |||||| | | ||||||||||||||
Sbjct 1279325 CCTCCTGGACATCAGAGAGAACACCCGGGTATTCTGGC-AGAGTTTGTATTTCTC----- 1279272
Query 4076 CAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTT 4135
||||| | ||| ||| || ||||||||| ||||| ||||| ||| || | | ||
Sbjct 1279271 CAAATAC----AAACAGG----ACTTTCAAAGTCCTGCATAATCCTTGTCCCATATACTT 1279220
Query 4136 TAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGA 4195
|||||| || ||| | | |||| ||||| | | | |||||||| | |||| |||||| |
Sbjct 1279219 TAAGATGGCCTGGGTGATTCATGGCTTCCTGACAAACAGAACTGTCACCAACTATCCAAA 1279160
Query 4196 CCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAAC 4255
|| ||||||| ||||||| ||||||| |||| |||| |||||| |||||| | | ||
Sbjct 1279159 TCACATCTACTTCATTTGCTGATTCTGGTTGTTTAGTAAATTTTAAGGCATCAGCCAGAC 1279100
Query 4256 TCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACAT 4315
| | || | ||||||||| | |||||| | ||||| ||||| | |||||||| | ||
Sbjct 1279099 TTCTGGCAAGAAAATGAGCCCCTTGTGGAGGTTCCTTGAGTTCTCTCCTGAGAACTAAAT 1279040
Query 4316 TAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTT---TAC 4372
||||||| ||||||||| || |||||||| ||||| ||||| || ||||| | | |
Sbjct 1279039 TAATTCTAGATTTTAAAGGTCGATTCTTCTCGGGAATGGAGAAGCAGGTCTTCTTCCTCC 1278980
Query 4373 CCATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAAT 4432
|||||||||| | |||||||| | || ||| ||||| || || | ||| || |||||||
Sbjct 1278979 CCATAATCACCAGATTCTGTTGACCTTTTACTGAAGAGGTTGTGGCCATCCTCTGGAAAT 1278920
Query 4433 GTTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGT-TTGCCAATG-CCCAT 4490
| || |||||| || |||||| ||| || | ||| | || |||||| |||||
Sbjct 1278919 ACCTGAATTCATTCCCGAGCAGTGGCCAGGGC-AGGTCCCTGATCTTACCAATGCCCCAT 1278861
Query 4491 GTTTTGAGCTACAGCAACAATGCAGTTTA 4519
||| || | ||||| || |||||| |||
Sbjct 1278860 GTTCTGGGACACAGCGACGATGCAGCTTA 1278832
>seq37
Length=10690711
Score = 333 bits (368), Expect = 2e-86
Identities = 441/607 (73%), Gaps = 14/607 (2%)
Strand=Plus/Plus
Query 3955 AAAAGACATTTGTATTA--ATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTT 4012
|||| || ||| ||||| || |||||| | ||| |||||||||||||||||||||||||
Sbjct 7719529 AAAACACTTTTATATTATAATCATTCTTTTAATACACTTCAAATTTGTACTTAATACTTT 7719588
Query 4013 TCTCTTCTTGCACATTAGAAAGAACACTT---GGATATTCTATCAAAAGTTTGTATTTCT 4069
|||| || | ||||| || | ||||| | || |||||| | |||||| |||||||
Sbjct 7719589 TCTCCTCCTTCACATCGGAGACAACACGTTGTGGGTATTCTGGGAGAAGTTTATATTTCT 7719648
Query 4070 CTAGATCAAATTCTG--GAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCAC 4127
||| ||||| ||||| | || ||| ||| |||||| || |||||||||| ||| |
Sbjct 7719649 CTAAATCAACTTCTGACGGGGGAAAGTGCCACTTTCAAAATCCTGCATGATCCATGTCTC 7719708
Query 4128 AAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAAT 4187
||| ||||| | || | | ||| |||| ||||| || || |||||||| | ||| |
Sbjct 7719709 AAATAGTTTTAAATGGTCTCT-TAATTCATGGCTTCCTTCTAAACAGAACTGCTTCCCAC 7719767
Query 4188 TATCCAGACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATC 4247
| | | |||||||||| |||||||| ||||||| | || | ||||||||||| |||||
Sbjct 7719768 TTTGAAAACCATGTCTAGTTTATTTGTTAATTCTAGTTGCCCAGTAAGTTTTAAGGCATC 7719827
Query 4248 ATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAG 4307
|| | ||| | || | ||||| |||||| ||||| | ||| | ||||| | |||||
Sbjct 7719828 ATTCAGACTTTAGGCAAGAAAATTAGCTCTTTGTGGTGGTTCCCTGAGTTCTCTACTGAG 7719887
Query 4308 AACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTT 4367
||| | |||||||||| ||||||| | || | |||| |||||| ||||| |||||
Sbjct 7719888 AACTAAATTAATTCTGTACTTTAAAGATTGATTACTTTCAGTAATTGAAAACCAGGTCTT 7719947
Query 4368 TTTACCCATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTG 4427
||| |||||| |||| |||||||||| || ||| ||||| || || |||||| ||||
Sbjct 7719948 CCTACTCATAATTACTAGATTCTGTTTAACTTCTACTGAAGAGGTTGTGGTCATTTTTTG 7720007
Query 4428 GAAATGTTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCC 4487
||| || || | ||| | || | || || |||| || || | || | |||||
Sbjct 7720008 GAA----TTGAATTTATTTCTGAGCCAGGGTCAGGGCATGTCCCCATTCCTGACGATGCC 7720063
Query 4488 CATGTTTTGAGCTACAGCAACAATGCAGTTTAGTGCTTGAACCATAATACTA--ACTAAA 4545
||| || || | | | ||| ||| |||| | |||| ||||| || | | | ||
Sbjct 7720064 CATCTTCTGGGAAAGTGTGACAGGACAGCTTAGCGGATGAATCATAACACCACCAGTGAA 7720123
Query 4546 GACTTCT 4552
||||||
Sbjct 7720124 CACTTCT 7720130
>seq599
Length=1005688
Score = 242 bits (268), Expect = 3e-59
Identities = 503/740 (68%), Gaps = 8/740 (1%)
Strand=Plus/Minus
Query 101534 TAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATATAATGTCA 101593
||||||||||| | ||||||||| | || || || || | ||| | ||| |||
Sbjct 754688 TAAACAGCCATTTCCATTTTAATAGTTGGATGCGGATTGCACCCTTCAACCTTAAAGTCT 754629
Query 101594 TCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACGGT 101653
|| ||||| ||||||||||| ||| | || | || | || |||| || |||
Sbjct 754628 TCAGCTTTGAAGTCATCAATTTTCTCAACTTGTCGAAGAATCTTGAGCTTTGGGAAAGGT 754569
Query 101654 CTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGCA 101713
|| || |||| | ||| ||||| || | | ||||||| | || || || |||
Sbjct 754568 CTGGGTTCTCGCTGAAGCTGAATTTTCAGTGGCTTGATGTGATTCAGGTAAATATGGGCA 754509
Query 101714 TCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAA 101773
||||| | |||||| | ||| || || ||| || |||| || || |||| | |
Sbjct 754508 TCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGCGCGATCACGTAC 754449
Query 101774 GTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTT 101833
|| | | | ||||| || |||| || ||||| |||| ||||| || |||||||
Sbjct 754448 GTGAGCAAGGTGTAGCTGGCGGTGTTGAAAGGCACACCTAGGCCCATGTCTCCTGATCTC 754389
Query 101834 TGATACAGTTGACAGGAAAGCTTTCCAT-CACAGACATAAAATTGACTTAATACATGACA 101892
|| | ||| || ||||| |||| |||| ||| | || || || | | |||| ||
Sbjct 754388 TGGTGCAGCTGGCAGGACAGCTCACCATTCACCT-CGTAGAACTGGCAGAGGGCATGGCA 754330
Query 101893 AGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTCT 101952
|| |||| | |||| ||||| ||| ||||||||| ||||| | || |||||
Sbjct 754329 TGGAGGCAGCGCCATCAGAGGAAGATCTCTTGGATTCCAAGCGCACATGATGATTCTTCT 754270
Query 101953 ATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTT-TAATTGGTCAACTCCTTCTC 102011
|| |||||| ||||| || || ||| ||| || ||| || |||||||||||||| ||
Sbjct 754269 GTCATCAGGGTTGGTTTTGATGGTGTCAGTCA-CTCTTTGTAGTTGGTCAACTCCTTGTC 754211
Query 102012 CTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCAT 102071
|| |||||| | | | || | |||||||| || |||||||||||||| || ||||
Sbjct 754210 CTGAATAATCTGAATCCATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCAT 754151
Query 102072 ACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATC 102131
| || || || | || ||||| |||||| | | || || | |||| | ||| ||
Sbjct 754150 AAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAAGCTATCCAGAAAGTCTC 754091
Query 102132 TAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTTT-GCTGTCAGTA 102190
|||||||| |||||||| || | ||| || | || |||||||| ||| || |
Sbjct 754090 GGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCTTTC--TG 754033
Query 102191 GATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATAC-TCTCTTAGT 102249
| ||| ||||||| |||| || || || | |||||| |||| || || | || ||
Sbjct 754032 GGTCCCTTGATAAAGCACAGCAACTCCTCCAAAACACCCTTCCAGAACACAACGTTTGGT 753973
Query 102250 AGTTAAAAGTGGAAATTCAT 102269
|| | || ||||||||||
Sbjct 753972 TGTCAGCAGAGGAAATTCAT 753953
>seq249
Length=3335908
Score = 212 bits (234), Expect = 5e-50
Identities = 192/242 (79%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 26931 AGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGC 26990
|||| |||| | |||| | | |||||||| || ||||| |||||||| || | ||| |||
Sbjct 7354 AGCTCTTAGGCCACATGGCGGACAATGGGGGTGACGCAGGTGCAGCCCACGGACACCAGC 7413
Query 26991 ATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATC 27050
|||||||| |||| || || || | |||| | || || | |||||| || || |||
Sbjct 7414 ATCTTCTCCAGCCGGAAGGAGTTGGTGCAGTGCCGAGGCTCCCTGCGCAGGACCAGGATC 7473
Query 27051 TCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACAT 27110
||||| ||||| ||||| ||||||||||||||||| || |||||||||||||| || ||
Sbjct 7474 TCTTGCTGGATGGGGACGGAGTTCATGTGGTAGTCCACGTTCCCATCAGCATTGACGCAG 7533
Query 27111 CCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTG 27170
|| |||| ||| ||||| || ||||| ||||||||||||||||| || | || ||||||
Sbjct 7534 CCCAAGTGGCGGCACTTCGCCTCCCAGATCACAGAGGGATATCTCTCAGGGTCCTCATTG 7593
Query 27171 CG 27172
||
Sbjct 7594 CG 7595
Score = 140 bits (154), Expect = 2e-28
Identities = 146/191 (76%), Gaps = 3/191 (2%)
Strand=Plus/Plus
Query 27174 TGGAGAGTCCAAGGAGACGTAGATCTATTGTAGTAGTCTGAAGCCCTTTTAGAACTAGTA 27233
|||||| ||||||| || | |||| |||||||| ||||| | |||||| ||| | |||
Sbjct 8738 TGGAGATTCCAAGGTGAGGAGGATCGGTTGTAGTAATCTGAGGGCCTTTTGGAATTGGTA 8797
Query 27234 TTCCAGTTACGGATGCTCAAAGTAACCATCACAGACCGTGGAAAGCTATTGTTAGCAGC- 27292
|||| |||||||||| ||| | |||||||||| ||| |||||| | |||| ||||
Sbjct 8798 TTCCGGTTACGGATGTTCAGGTTGACCATCACAGTCCGGGGAAAGTTCTTGTCCTCAGCA 8857
Query 27293 --TAAGCATCTTGGGGTTTGTGCGCTTGTTATTTCTGACTTTACTATACAATCTATGCTC 27350
| ||||| |||| |||||| |||||||||| ||| ||| ||| | || | ||||
Sbjct 8858 TTTGGGCATCCTGGGTTTTGTGGGCTTGTTATTGCTGCCTTCACTGTCGCCTCCAGGCTC 8917
Query 27351 AGCAGCAGAAG 27361
|||||||| ||
Sbjct 8918 AGCAGCAGCAG 8928
>seq143
Length=5113317
Score = 206 bits (228), Expect = 2e-48
Identities = 256/348 (74%), Gaps = 33/348 (9%)
Strand=Plus/Plus
Query 1052 TCTAGCTTTGCTCTCAATGAGCTATAAATAAAAATATAAAATCCACATTGATTACTATAC 1111
|| ||| ||||||||||| || || ||||||||||| ||||| |||||||||| |||||
Sbjct 3585021 TCCAGCCTTGCTCTCAATTGGCCATGAATAAAAATATTAAATCAACATTGATTATTATAC 3585080
Query 1112 AAGACAATGAAGATGCTACTCACGTGTGTTATCTACAGTTTAATTATAGATAAAAGACAA 1171
||||||||||||||||||| | |||||| |||||| |||||| | ||| |||||||||
Sbjct 3585081 CAGACAATGAAGATGCTACTTAAGTGTGTGGTCTACAATTTAATCAGAGAGAAAAGACAA 3585140
Query 1172 ATGATGCTTTACCAACTTAAGAACTACATGACA-TGTGTT---TT-----------CTAG 1216
|||||| || |||||| ||||| |||||| | |||||| || |||
Sbjct 3585141 ATGATGTCCTAACAACTTGAGAACCACATGATACTGTGTTACATTGAATGTTACGGCTAT 3585200
Query 1217 A---TTCTACATGAT---AG-------TAGAATCTTGA-AGCTTTACAGGTCTTCTGTCT 1262
| ||| ||| ||| || |||||| ||| || || || | ||| ||
Sbjct 3585201 ACAGTTCAACAGGATTCCAGAGAAGGACAGAATCATGAGCCCTATAGAGCCCCTCTTTCC 3585260
Query 1263 AGAAGGCATATAGTAAAGATAAAGCTTATCTAGTGTCTTCAAAAGTAAGTAGTAGAGAAG 1322
|||||||||||| | ||||| |||||| || ||||| ||| || |||| |||||||
Sbjct 3585261 AGAAGGCATATAATGAAGATGAAGCTTGGGCAGGGTCTTGAAAGGTGGGTAGGAGAGAAG 3585320
Query 1323 ACAACATGTAGCATATCACTGAGTAACTTAATTAAGAATACAGAGATA 1370
|| |||| ||| || |||||||||| ||||||| |||||||||
Sbjct 3585321 ACGACATCCGGCACATGACTGAGTAAC----TTAAGAACACAGAGATA 3585364
>seq17
Length=12262279
Score = 147 bits (162), Expect = 2e-30
Identities = 108/126 (86%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224
||||| |||||||| || ||||||||||| | |||||||||||||||||||||||||||
Sbjct 1269298 TTATAAACAGAACTGCCACCAATTATCCAAATCATGTCTACTTTATTTGCTAATTCTGGT 1269357
Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284
||||| ||||||||||| |||||||| | ||| || || | ||||||||||| ||||||
Sbjct 1269358 TGTTCAGTAAGTTTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTTGTGGA 1269417
Query 4285 AGCTCC 4290
| |||
Sbjct 1269418 GGTTCC 1269423
Score = 134 bits (148), Expect = 1e-26
Identities = 95/109 (87%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349
||| |||||| |||||||||| ||||||||||| | |||||||| || |||||||||||
Sbjct 1279977 CTTGAGTTCCCTGCTGAGAACTACATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGG 1280036
Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398
||| |||||||| ||||| ||||||||||||| | |||||||||||||
Sbjct 1280037 AATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTTATCT 1280085
Score = 131 bits (144), Expect = 1e-25
Identities = 118/147 (80%), Gaps = 1/147 (1%)
Strand=Plus/Plus
Query 4045 TATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCA 4104
|| ||| || |||||| |||||||| | ||||| |||||||||||| ||||||| ||||
Sbjct 1265087 TACTCTGGCAGAAGTTTATATTTCTCCAAATCAATTTCTGGAAAAAACGTGTCACTTTCA 1265146
Query 4105 AAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCT 4164
||||| ||||||||||| ||||||||||||||||||| || || | | |||| |||||
Sbjct 1265147 AAGTCCTGCATGATCCTTGTCACAAACAGTTTAAGATGGCCTGAGTGATTCATGGCTTCC 1265206
Query 4165 TTATACACAGAACTACCTCCAATTATC 4191
|| | | | ||| || | ||||| ||
Sbjct 1265207 TTTGAAATAAAACAACAT-CAATTTTC 1265232
Score = 104 bits (114), Expect = 2e-17
Identities = 87/107 (81%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 3941 ACATCTTCACCTGTAAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGT 4000
||| ||| | || |||| ||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1250035 ACAGCTTAAACTAGAAAACACATTCATATTAATCATTCTTCTCATATACTTCAAATTTGT 1250094
Query 4001 ACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAACACTTGGATAT 4047
||||||| | |||||| || || ||| ||| |||||| ||| |||
Sbjct 1250095 ACTTAATGCCTTTCTCCTCCTGGGCATCAGAGGGAACACCTGGGTAT 1250141
>seq67
Length=7901503
Score = 105 bits (116), Expect = 5e-18
Identities = 93/116 (80%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 29381 GGGTCAGGAGTATATTACAGGTGTTGGAAGTTTGATGACTGTAGCTTTAAACGTATCTCA 29440
|||| | |||||||| || |||||||||||||||| || || | || | || ||||||
Sbjct 5219262 GGGTTACGAGTATATAACCGGTGTTGGAAGTTTGAGGATTGCACTTTCAGCCGCATCTCA 5219321
Query 29441 AATCAATTGTCTGAAACACAGTTAAAGTATCATTGTTGTAAGAAGAACTTGTGTAA 29496
|| |||||||| |||| ||||||||||||| || || |||||| || |||||||
Sbjct 5219322 AACCAATTGTCGGAAAATGAGTTAAAGTATCACTGCTGCAAGAAGGACCTGTGTAA 5219377
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361219693928156
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |