Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq599 242 4e-59
seq1 228 1e-54
seq13 168 8e-37
seq39 165 1e-35
>seq599
Length=1005688
Score = 242 bits (268), Expect = 4e-59
Identities = 499/733 (68%), Gaps = 8/733 (1%)
Strand=Plus/Minus
Query 145590 AAAGTCCTCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCT-GG 145648
|||||| || || |||||||||| || | ||| || | | || ||| ||||| | ||
Sbjct 754635 AAAGTCTTCAGCTTTGAAGTCATCAATTTTCTCAACTTGTCGAAGAATCTTGAGCTTTGG 754576
Query 145649 GAAAGGGCCGGGGGCTC-CTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAG 145707
|||||| | ||| ||| ||| ||||| | ||||| |||| | ||| || |||||
Sbjct 754575 GAAAGGTCTGGGTTCTCGCTGA--AGCTGAATTTTCAGTGGCTTGATGTGATTCAGGTAA 754518
Query 145708 ACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCG 145767
| || || || |||| || | ||||| || |||| |||||||||| ||| |||
Sbjct 754517 ATATGGGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGCGCG 754458
Query 145768 ACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCC 145827
| || ||| || |||| || ||||||||| ||||||| ||||| || || ||||||||
Sbjct 754457 ATCACGTACGTGAGCAAGGTGTAGCTGGCGGTGTTGAAAGGCACACCTAGGCCCATGTCT 754398
Query 145828 CCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGG 145887
|| || | ||||| |||||||||||| ||||| || | || ||||||||||||| |||
Sbjct 754397 CCTGATCTCTGGTGCAGCTGGCAGGACAGCTCACCATTCACCTCGTAGAACTGGCAGAGG 754338
Query 145888 AGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACG 145947
||||| || ||||| ||||| || || || || ||||| ||| | || |
Sbjct 754337 GCATGGCATGGAGGCAGCGCCATCAGAGGAAGATCTCTTGGATTCCAAGCGCACATGATG 754278
Query 145948 AGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTG-AGCTGGTCCAC 146006
| || ||| || ||||| | ||||| | ||| || || || ||||| ||
Sbjct 754277 ATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAGTCA-CTCTTTGTAGTTGGTCAAC 754219
Query 146007 GCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTG 146066
|| || || ||||||| | || ||| | ||||| || |||||||||||
Sbjct 754218 TCCTTGTCCTGAATAATCTGAATCCATATCTCTGTATTCTGCCCCAAAATGCCTCCACTG 754159
Query 146067 GAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAG 146126
||| || || || || |||| |||||| || ||| | || | | ||
Sbjct 754158 GAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAAGCTATCCAG 754099
Query 146127 GAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGA 146186
||||| ||||| || ||||| |||||||| || || ||| | | || ||||| || |
Sbjct 754098 AAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGC 754039
Query 146187 GTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGAC-CC 146245
| | ||| ||| |||| || || |||| ||| || | || ||| ||||||| || |
Sbjct 754038 TTTC-TGGGTCCCTTGATAAAGCACAGCAACTCCTCCAAAACACCCTTCCAGAACACAAC 753980
Query 146246 TCTTGGTGGTCAGCAGGGGGAACTGGCCCCGCAGGGAGTACTTGGCCTGGTCCCCGAAGA 146305
||||| |||||||| || || | | | |||| ||| ||||| ||||| |
Sbjct 753979 GTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCCGAACA 753920
Query 146306 CGGACAGGGTGCC 146318
| |||||||| ||
Sbjct 753919 CCGACAGGGTCCC 753907
>seq1
Length=21314971
Score = 228 bits (252), Expect = 1e-54
Identities = 592/890 (67%), Gaps = 27/890 (3%)
Strand=Plus/Minus
Query 176373 CTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATAC 176432
|| ||||| || | || | ||||||||| | || |||||| | || |||||| ||||
Sbjct 7881101 CTGGTGTTCATCGTGGGCCTCTTGGGCAATGTGTTGGTGGTGGTGATCCTCATAAAATAC 7881042
Query 176433 ATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTA 176492
| || | || || | || || || | ||| | ||| |||| || |||||| ||||
Sbjct 7881041 AGGAGGCTCCGAATTATGACCAATATCTACCTGCTCAACCTGGCCATTTCTGACCTGCTT 7880982
Query 176493 TTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTT 176552
|| || || || | ||||| ||||| |||||| | |||| ||| ||| ||||
Sbjct 7880981 TTCCTCTTCACCCTTCCATTCTGGATCCACTATGTC---ATGTGGAGTGACTGGGTTTTT 7880925
Query 176553 GGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTC 176612
|| | | ||||||| | || ||| | | || || | | || || || ||
Sbjct 7880924 GGCCATGGCATGTGTAAGGTCATCTCGGGGTTTTATTTCACGGGCTTATATGGCGAGATC 7880865
Query 176613 TTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGC- 176671
|||| |||||||||||| || | |||||||| || || ||||| | || || |||
Sbjct 7880864 TTTTTCATCATCCTGCTGACGATTGACAGGTACCTGGCCATTGTCCACGCCGTGTTTGCC 7880805
Query 176672 -TTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGG 176730
|| ||| | || || || | ||| | | ||| | | || ||| ||||
Sbjct 7880804 CTTCGAGCCC--GCACTGTCACTTTTGGTGTCATCACCAGCATCGTCACTTGGGGCCTGG 7880747
Query 176731 CAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGT---- 176786
||| | | | |||||||||||| |||| || | | ||| || |||| |
Sbjct 7880746 CAGTGCTAGCAGCTCTCCCTGAATTTATCTTCCAAG-AGACC-----GAAAATGTTCTTC 7880693
Query 176787 -AGGGT-TCAGTGTGATCCTTACTACCCAGAG-ATGTCT-ACAAATGTTTGGAGGCGCGC 176842
|| || | | || | ||| ||||| ||| ||| ||||| | ||| ||
Sbjct 7880692 AAGAGTCTTATTGCAACCCTGTGTACCCTGAGGATGAAGCACAAAGCT--GGAAGCATTT 7880635
Query 176843 CCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTG 176902
| | | | | | | || || |||| | | ||||||||| ||||||| ||||
Sbjct 7880634 CTATGCTCTGAGAATAAACATCTTGGTTCTCGCTCTCCCTCTGCTCGTTATGGCCATCTG 7880575
Query 176903 CTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCAT 176962
|||| | ||| |||| || |||| ||| | |||||| || || ||||||||||||||
Sbjct 7880574 CTACACAGGAATCATCAAAACACTGCTGAAGTGCCCCAATAAAAAAAAGTACAAGGCCAT 7880515
Query 176963 CAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGT 177022
| | ||||| |||||||||||||||| | ||| |||| ||||||||||||||| | |
Sbjct 7880514 CCGACTCATTTTTGTCATCATGGTGGTGTTTTTCATTTTCTGGACACCCTACAACCTGGC 7880455
Query 177023 TCTCCTACTGTCTACCTTTCACGCAACCCT-TCTTAACCTG-CAGTGTGCATTGAGCAGT 177080
|||||| || | ||||||||| || ||| | | | | || | || ||| |||||
Sbjct 7880454 TCTCCTTCTCTATACCTTTCAAGCCACCTTGTTTGGATATGACTGTAAGCA--GAGCAAG 7880397
Query 177081 AACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAAC 177140
| ||||| | || || ||| | || | | |||||| | ||||| ||| | |||
Sbjct 7880396 GATCTGGACCTAGCCCTACTGGTGACGCAGGTGATCGCCTACTCCCACTGCTGCGTTAAC 7880337
Query 177141 CCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCAC 177200
|| || |||||||| ||||| || |||| ||| | | ||||| ||||||||||||||
Sbjct 7880336 CCGGTAATCTACGCCTTCGTTGGAGAGAGGTTCCGGAAGTACCTGCACCACTTCTTCCAC 7880277
Query 177201 ACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCTGGTGA 177250
| | ||| | | ||| | |||| |||||||| ||||| || ||||
Sbjct 7880276 AGGCATGTGCTCGTGTACTTGAGCAAATACATCCCATTCCTTCCTAGTGA 7880227
Score = 228 bits (252), Expect = 1e-54
Identities = 592/890 (67%), Gaps = 27/890 (3%)
Strand=Plus/Minus
Query 9487 CTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATAC 9546
|| ||||| || | || | ||||||||| | || |||||| | || |||||| ||||
Sbjct 7881101 CTGGTGTTCATCGTGGGCCTCTTGGGCAATGTGTTGGTGGTGGTGATCCTCATAAAATAC 7881042
Query 9547 ATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTA 9606
| || | || || | || || || | ||| | ||| |||| || |||||| ||||
Sbjct 7881041 AGGAGGCTCCGAATTATGACCAATATCTACCTGCTCAACCTGGCCATTTCTGACCTGCTT 7880982
Query 9607 TTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTT 9666
|| || || || | ||||| ||||| |||||| | |||| ||| ||| ||||
Sbjct 7880981 TTCCTCTTCACCCTTCCATTCTGGATCCACTATGTC---ATGTGGAGTGACTGGGTTTTT 7880925
Query 9667 GGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTC 9726
|| | | ||||||| | || ||| | | || || | | || || || ||
Sbjct 7880924 GGCCATGGCATGTGTAAGGTCATCTCGGGGTTTTATTTCACGGGCTTATATGGCGAGATC 7880865
Query 9727 TTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGC- 9785
|||| |||||||||||| || | |||||||| || || ||||| | || || |||
Sbjct 7880864 TTTTTCATCATCCTGCTGACGATTGACAGGTACCTGGCCATTGTCCACGCCGTGTTTGCC 7880805
Query 9786 -TTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGG 9844
|| ||| | || || || | ||| | | ||| | | || ||| ||||
Sbjct 7880804 CTTCGAGCCC--GCACTGTCACTTTTGGTGTCATCACCAGCATCGTCACTTGGGGCCTGG 7880747
Query 9845 CAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGT---- 9900
||| | | | |||||||||||| |||| || | | ||| || |||| |
Sbjct 7880746 CAGTGCTAGCAGCTCTCCCTGAATTTATCTTCCAAG-AGACC-----GAAAATGTTCTTC 7880693
Query 9901 -AGGGT-TCAGTGTGATCCTTACTACCCAGAG-ATGTCT-ACAAATGTTTGGAGGCGCGC 9956
|| || | | || | ||| ||||| ||| ||| ||||| | ||| ||
Sbjct 7880692 AAGAGTCTTATTGCAACCCTGTGTACCCTGAGGATGAAGCACAAAGCT--GGAAGCATTT 7880635
Query 9957 CCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTG 10016
| | | | | | | || || |||| | | ||||||||| ||||||| ||||
Sbjct 7880634 CTATGCTCTGAGAATAAACATCTTGGTTCTCGCTCTCCCTCTGCTCGTTATGGCCATCTG 7880575
Query 10017 CTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCAT 10076
|||| | ||| |||| || |||| ||| | |||||| || || ||||||||||||||
Sbjct 7880574 CTACACAGGAATCATCAAAACACTGCTGAAGTGCCCCAATAAAAAAAAGTACAAGGCCAT 7880515
Query 10077 CAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGT 10136
| | ||||| |||||||||||||||| | ||| |||| ||||||||||||||| | |
Sbjct 7880514 CCGACTCATTTTTGTCATCATGGTGGTGTTTTTCATTTTCTGGACACCCTACAACCTGGC 7880455
Query 10137 TCTCCTACTGTCTACCTTTCACGCAACCCT-TCTTAACCTG-CAGTGTGCATTGAGCAGT 10194
|||||| || | ||||||||| || ||| | | | | || | || ||| |||||
Sbjct 7880454 TCTCCTTCTCTATACCTTTCAAGCCACCTTGTTTGGATATGACTGTAAGCA--GAGCAAG 7880397
Query 10195 AACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAAC 10254
| ||||| | || || ||| | || | | |||||| | ||||| ||| | |||
Sbjct 7880396 GATCTGGACCTAGCCCTACTGGTGACGCAGGTGATCGCCTACTCCCACTGCTGCGTTAAC 7880337
Query 10255 CCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCAC 10314
|| || |||||||| ||||| || |||| ||| | | ||||| ||||||||||||||
Sbjct 7880336 CCGGTAATCTACGCCTTCGTTGGAGAGAGGTTCCGGAAGTACCTGCACCACTTCTTCCAC 7880277
Query 10315 ACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCTGGTGA 10364
| | ||| | | ||| | |||| |||||||| ||||| || ||||
Sbjct 7880276 AGGCATGTGCTCGTGTACTTGAGCAAATACATCCCATTCCTTCCTAGTGA 7880227
>seq13
Length=13416947
Score = 168 bits (186), Expect = 8e-37
Identities = 134/161 (83%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809
|||||||||| ||| |||| |||||| || ||||||| ||||||||| |||||||| |||
Sbjct 11482516 AGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGC 11482457
Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869
|| || || |||||||| || || | |||||||||||||||||| ||||| ||| | ||
Sbjct 11482456 ACACCTAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 11482397
Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910
|||||||||||||| ||| ||||| || ||||| |||||
Sbjct 11482396 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 11482356
>seq39
Length=11376263
Score = 165 bits (182), Expect = 1e-35
Identities = 131/157 (83%), Gaps = 3/157 (2%)
Strand=Plus/Plus
Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141
||||| | |||||||| || || ||| || ||||||||||||||||||||||| | ||
Sbjct 4485513 CAGCGTCGCAGCCTCAGCCGGAAGGTCTTCAGCTTTTCCCCCAGGGAGTTCACGTGCACC 4485572
Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201
|| | ||| | | |||||||| || ||||||||||||||||||||||||||||||
Sbjct 4485573 TTGAC---GTCTGGGTCATGGTTCTCAGCTTGGGGCATCACCTCCTCCAGGTAAAACTGG 4485629
Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238
||||||||||||| ||| ||||| |||||||||||||
Sbjct 4485630 ATCATCTCAGACAAGGCTTGGCAACCCAGGTAACCCT 4485666
Score = 109 bits (120), Expect = 6e-19
Identities = 81/95 (85%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 137922 TCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTC 137981
|||||||| |||| | ||||||||||| |||||||||| |||||||||||||||||
Sbjct 4483234 TCAGTTTTGTGTCTTCATTGTCATGTAGGCTTCTATGTAGTCGATGAAGATGTCAAACTC 4483293
Query 137982 GCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016
|||||||| |||||||| ||||| || |||||||
Sbjct 4483294 ACTCATGGCTTTGTAGACGCCTTTCTCTTGGAGCT 4483328
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 590024017630240
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