Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq599 242 4e-59 seq1 228 1e-54 seq13 168 8e-37 seq39 165 1e-35 >seq599 Length=1005688 Score = 242 bits (268), Expect = 4e-59 Identities = 499/733 (68%), Gaps = 8/733 (1%) Strand=Plus/Minus Query 145590 AAAGTCCTCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCT-GG 145648 |||||| || || |||||||||| || | ||| || | | || ||| ||||| | || Sbjct 754635 AAAGTCTTCAGCTTTGAAGTCATCAATTTTCTCAACTTGTCGAAGAATCTTGAGCTTTGG 754576 Query 145649 GAAAGGGCCGGGGGCTC-CTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAG 145707 |||||| | ||| ||| ||| ||||| | ||||| |||| | ||| || ||||| Sbjct 754575 GAAAGGTCTGGGTTCTCGCTGA--AGCTGAATTTTCAGTGGCTTGATGTGATTCAGGTAA 754518 Query 145708 ACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCG 145767 | || || || |||| || | ||||| || |||| |||||||||| ||| ||| Sbjct 754517 ATATGGGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGCGCG 754458 Query 145768 ACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCC 145827 | || ||| || |||| || ||||||||| ||||||| ||||| || || |||||||| Sbjct 754457 ATCACGTACGTGAGCAAGGTGTAGCTGGCGGTGTTGAAAGGCACACCTAGGCCCATGTCT 754398 Query 145828 CCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGG 145887 || || | ||||| |||||||||||| ||||| || | || ||||||||||||| ||| Sbjct 754397 CCTGATCTCTGGTGCAGCTGGCAGGACAGCTCACCATTCACCTCGTAGAACTGGCAGAGG 754338 Query 145888 AGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACG 145947 ||||| || ||||| ||||| || || || || ||||| ||| | || | Sbjct 754337 GCATGGCATGGAGGCAGCGCCATCAGAGGAAGATCTCTTGGATTCCAAGCGCACATGATG 754278 Query 145948 AGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTG-AGCTGGTCCAC 146006 | || ||| || ||||| | ||||| | ||| || || || ||||| || Sbjct 754277 ATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAGTCA-CTCTTTGTAGTTGGTCAAC 754219 Query 146007 GCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTG 146066 || || || ||||||| | || ||| | ||||| || ||||||||||| Sbjct 754218 TCCTTGTCCTGAATAATCTGAATCCATATCTCTGTATTCTGCCCCAAAATGCCTCCACTG 754159 Query 146067 GAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAG 146126 ||| || || || || |||| |||||| || ||| | || | | || Sbjct 754158 GAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAAGCTATCCAG 754099 Query 146127 GAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGA 146186 ||||| ||||| || ||||| |||||||| || || ||| | | || ||||| || | Sbjct 754098 AAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGC 754039 Query 146187 GTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGAC-CC 146245 | | ||| ||| |||| || || |||| ||| || | || ||| ||||||| || | Sbjct 754038 TTTC-TGGGTCCCTTGATAAAGCACAGCAACTCCTCCAAAACACCCTTCCAGAACACAAC 753980 Query 146246 TCTTGGTGGTCAGCAGGGGGAACTGGCCCCGCAGGGAGTACTTGGCCTGGTCCCCGAAGA 146305 ||||| |||||||| || || | | | |||| ||| ||||| ||||| | Sbjct 753979 GTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCCGAACA 753920 Query 146306 CGGACAGGGTGCC 146318 | |||||||| || Sbjct 753919 CCGACAGGGTCCC 753907 >seq1 Length=21314971 Score = 228 bits (252), Expect = 1e-54 Identities = 592/890 (67%), Gaps = 27/890 (3%) Strand=Plus/Minus Query 176373 CTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATAC 176432 || ||||| || | || | ||||||||| | || |||||| | || |||||| |||| Sbjct 7881101 CTGGTGTTCATCGTGGGCCTCTTGGGCAATGTGTTGGTGGTGGTGATCCTCATAAAATAC 7881042 Query 176433 ATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTA 176492 | || | || || | || || || | ||| | ||| |||| || |||||| |||| Sbjct 7881041 AGGAGGCTCCGAATTATGACCAATATCTACCTGCTCAACCTGGCCATTTCTGACCTGCTT 7880982 Query 176493 TTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTT 176552 || || || || | ||||| ||||| |||||| | |||| ||| ||| |||| Sbjct 7880981 TTCCTCTTCACCCTTCCATTCTGGATCCACTATGTC---ATGTGGAGTGACTGGGTTTTT 7880925 Query 176553 GGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTC 176612 || | | ||||||| | || ||| | | || || | | || || || || Sbjct 7880924 GGCCATGGCATGTGTAAGGTCATCTCGGGGTTTTATTTCACGGGCTTATATGGCGAGATC 7880865 Query 176613 TTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGC- 176671 |||| |||||||||||| || | |||||||| || || ||||| | || || ||| Sbjct 7880864 TTTTTCATCATCCTGCTGACGATTGACAGGTACCTGGCCATTGTCCACGCCGTGTTTGCC 7880805 Query 176672 -TTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGG 176730 || ||| | || || || | ||| | | ||| | | || ||| |||| Sbjct 7880804 CTTCGAGCCC--GCACTGTCACTTTTGGTGTCATCACCAGCATCGTCACTTGGGGCCTGG 7880747 Query 176731 CAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGT---- 176786 ||| | | | |||||||||||| |||| || | | ||| || |||| | Sbjct 7880746 CAGTGCTAGCAGCTCTCCCTGAATTTATCTTCCAAG-AGACC-----GAAAATGTTCTTC 7880693 Query 176787 -AGGGT-TCAGTGTGATCCTTACTACCCAGAG-ATGTCT-ACAAATGTTTGGAGGCGCGC 176842 || || | | || | ||| ||||| ||| ||| ||||| | ||| || Sbjct 7880692 AAGAGTCTTATTGCAACCCTGTGTACCCTGAGGATGAAGCACAAAGCT--GGAAGCATTT 7880635 Query 176843 CCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTG 176902 | | | | | | | || || |||| | | ||||||||| ||||||| |||| Sbjct 7880634 CTATGCTCTGAGAATAAACATCTTGGTTCTCGCTCTCCCTCTGCTCGTTATGGCCATCTG 7880575 Query 176903 CTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCAT 176962 |||| | ||| |||| || |||| ||| | |||||| || || |||||||||||||| Sbjct 7880574 CTACACAGGAATCATCAAAACACTGCTGAAGTGCCCCAATAAAAAAAAGTACAAGGCCAT 7880515 Query 176963 CAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGT 177022 | | ||||| |||||||||||||||| | ||| |||| ||||||||||||||| | | Sbjct 7880514 CCGACTCATTTTTGTCATCATGGTGGTGTTTTTCATTTTCTGGACACCCTACAACCTGGC 7880455 Query 177023 TCTCCTACTGTCTACCTTTCACGCAACCCT-TCTTAACCTG-CAGTGTGCATTGAGCAGT 177080 |||||| || | ||||||||| || ||| | | | | || | || ||| ||||| Sbjct 7880454 TCTCCTTCTCTATACCTTTCAAGCCACCTTGTTTGGATATGACTGTAAGCA--GAGCAAG 7880397 Query 177081 AACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAAC 177140 | ||||| | || || ||| | || | | |||||| | ||||| ||| | ||| Sbjct 7880396 GATCTGGACCTAGCCCTACTGGTGACGCAGGTGATCGCCTACTCCCACTGCTGCGTTAAC 7880337 Query 177141 CCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCAC 177200 || || |||||||| ||||| || |||| ||| | | ||||| |||||||||||||| Sbjct 7880336 CCGGTAATCTACGCCTTCGTTGGAGAGAGGTTCCGGAAGTACCTGCACCACTTCTTCCAC 7880277 Query 177201 ACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCTGGTGA 177250 | | ||| | | ||| | |||| |||||||| ||||| || |||| Sbjct 7880276 AGGCATGTGCTCGTGTACTTGAGCAAATACATCCCATTCCTTCCTAGTGA 7880227 Score = 228 bits (252), Expect = 1e-54 Identities = 592/890 (67%), Gaps = 27/890 (3%) Strand=Plus/Minus Query 9487 CTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATAC 9546 || ||||| || | || | ||||||||| | || |||||| | || |||||| |||| Sbjct 7881101 CTGGTGTTCATCGTGGGCCTCTTGGGCAATGTGTTGGTGGTGGTGATCCTCATAAAATAC 7881042 Query 9547 ATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTA 9606 | || | || || | || || || | ||| | ||| |||| || |||||| |||| Sbjct 7881041 AGGAGGCTCCGAATTATGACCAATATCTACCTGCTCAACCTGGCCATTTCTGACCTGCTT 7880982 Query 9607 TTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTT 9666 || || || || | ||||| ||||| |||||| | |||| ||| ||| |||| Sbjct 7880981 TTCCTCTTCACCCTTCCATTCTGGATCCACTATGTC---ATGTGGAGTGACTGGGTTTTT 7880925 Query 9667 GGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTC 9726 || | | ||||||| | || ||| | | || || | | || || || || Sbjct 7880924 GGCCATGGCATGTGTAAGGTCATCTCGGGGTTTTATTTCACGGGCTTATATGGCGAGATC 7880865 Query 9727 TTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGC- 9785 |||| |||||||||||| || | |||||||| || || ||||| | || || ||| Sbjct 7880864 TTTTTCATCATCCTGCTGACGATTGACAGGTACCTGGCCATTGTCCACGCCGTGTTTGCC 7880805 Query 9786 -TTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGG 9844 || ||| | || || || | ||| | | ||| | | || ||| |||| Sbjct 7880804 CTTCGAGCCC--GCACTGTCACTTTTGGTGTCATCACCAGCATCGTCACTTGGGGCCTGG 7880747 Query 9845 CAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGT---- 9900 ||| | | | |||||||||||| |||| || | | ||| || |||| | Sbjct 7880746 CAGTGCTAGCAGCTCTCCCTGAATTTATCTTCCAAG-AGACC-----GAAAATGTTCTTC 7880693 Query 9901 -AGGGT-TCAGTGTGATCCTTACTACCCAGAG-ATGTCT-ACAAATGTTTGGAGGCGCGC 9956 || || | | || | ||| ||||| ||| ||| ||||| | ||| || Sbjct 7880692 AAGAGTCTTATTGCAACCCTGTGTACCCTGAGGATGAAGCACAAAGCT--GGAAGCATTT 7880635 Query 9957 CCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTG 10016 | | | | | | | || || |||| | | ||||||||| ||||||| |||| Sbjct 7880634 CTATGCTCTGAGAATAAACATCTTGGTTCTCGCTCTCCCTCTGCTCGTTATGGCCATCTG 7880575 Query 10017 CTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCAT 10076 |||| | ||| |||| || |||| ||| | |||||| || || |||||||||||||| Sbjct 7880574 CTACACAGGAATCATCAAAACACTGCTGAAGTGCCCCAATAAAAAAAAGTACAAGGCCAT 7880515 Query 10077 CAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGT 10136 | | ||||| |||||||||||||||| | ||| |||| ||||||||||||||| | | Sbjct 7880514 CCGACTCATTTTTGTCATCATGGTGGTGTTTTTCATTTTCTGGACACCCTACAACCTGGC 7880455 Query 10137 TCTCCTACTGTCTACCTTTCACGCAACCCT-TCTTAACCTG-CAGTGTGCATTGAGCAGT 10194 |||||| || | ||||||||| || ||| | | | | || | || ||| ||||| Sbjct 7880454 TCTCCTTCTCTATACCTTTCAAGCCACCTTGTTTGGATATGACTGTAAGCA--GAGCAAG 7880397 Query 10195 AACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAAC 10254 | ||||| | || || ||| | || | | |||||| | ||||| ||| | ||| Sbjct 7880396 GATCTGGACCTAGCCCTACTGGTGACGCAGGTGATCGCCTACTCCCACTGCTGCGTTAAC 7880337 Query 10255 CCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCAC 10314 || || |||||||| ||||| || |||| ||| | | ||||| |||||||||||||| Sbjct 7880336 CCGGTAATCTACGCCTTCGTTGGAGAGAGGTTCCGGAAGTACCTGCACCACTTCTTCCAC 7880277 Query 10315 ACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCTGGTGA 10364 | | ||| | | ||| | |||| |||||||| ||||| || |||| Sbjct 7880276 AGGCATGTGCTCGTGTACTTGAGCAAATACATCCCATTCCTTCCTAGTGA 7880227 >seq13 Length=13416947 Score = 168 bits (186), Expect = 8e-37 Identities = 134/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 |||||||||| ||| |||| |||||| || ||||||| ||||||||| |||||||| ||| Sbjct 11482516 AGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGC 11482457 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || || || |||||||| || || | |||||||||||||||||| ||||| ||| | || Sbjct 11482456 ACACCTAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 11482397 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 |||||||||||||| ||| ||||| || ||||| ||||| Sbjct 11482396 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 11482356 >seq39 Length=11376263 Score = 165 bits (182), Expect = 1e-35 Identities = 131/157 (83%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||| | |||||||| || || ||| || ||||||||||||||||||||||| | || Sbjct 4485513 CAGCGTCGCAGCCTCAGCCGGAAGGTCTTCAGCTTTTCCCCCAGGGAGTTCACGTGCACC 4485572 Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201 || | ||| | | |||||||| || |||||||||||||||||||||||||||||| Sbjct 4485573 TTGAC---GTCTGGGTCATGGTTCTCAGCTTGGGGCATCACCTCCTCCAGGTAAAACTGG 4485629 Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 ||||||||||||| ||| ||||| ||||||||||||| Sbjct 4485630 ATCATCTCAGACAAGGCTTGGCAACCCAGGTAACCCT 4485666 Score = 109 bits (120), Expect = 6e-19 Identities = 81/95 (85%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 137922 TCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTC 137981 |||||||| |||| | ||||||||||| |||||||||| ||||||||||||||||| Sbjct 4483234 TCAGTTTTGTGTCTTCATTGTCATGTAGGCTTCTATGTAGTCGATGAAGATGTCAAACTC 4483293 Query 137982 GCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 |||||||| |||||||| ||||| || ||||||| Sbjct 4483294 ACTCATGGCTTTGTAGACGCCTTTCTCTTGGAGCT 4483328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590024017630240