Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq192 419 3e-112 seq117 343 2e-89 seq19 307 1e-78 seq1 302 5e-77 seq161 123 3e-23 seq69 93.3 5e-14 >seq192 Length=4000003 Score = 419 bits (464), Expect = 3e-112 Identities = 383/482 (79%), Gaps = 1/482 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 || ||||| |||||||| ||||| | | | | ||||||| ||||| |||||||||||||| Sbjct 1479960 AGTAGGGCTTCGATGTCAGGCTCGATGTCAATGGTCTGGAAGCGGCGGCTGTACCTGCGC 1479901 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || || || |||| ||||| | ||||||||| |||||||| || || ||||| ||| Sbjct 1479900 ACAGGAACACCATCAGGGCCCACGAGGAACTTCTCAAAGTTCCATGCAACATCGTTTCGG 1479841 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 || || |||||||||| ||||||| ||||||| ||| ||||| | |||||||| Sbjct 1479840 CATACCGGAGACCAGGTGATGAGCTTGGGGTCGGTCATGAGCGCAGTGGCATCGTCGCTG 1479781 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||||| ||||||||||| || |||||||||||||| || || | || |||||||| ||| Sbjct 1479780 GGCGCTGGCAGGGCCTCCCGCAGGAAGGCGAAGAGAGGGTGCGACCCCGCACCGTTCACC 1479721 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||||| ||| ||||| |||||||| || ||||| ||||| | ||| Sbjct 1479720 TCGCACTTCTCGAAGAACATGAAGTTGGGCTCGAACCCACCACCAGGTCGGAC-TACTTG 1479662 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416 |||||| ||| ||||| | |||| |||||| ||||| || || || ||||| |||||| Sbjct 1479661 AGGGAATTCAAAATCTCTTCGTTCTTGGCGTTCTCCTGATGTCCAAAGTGGTTGCACGGG 1479602 Query 83417 AACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTG 83476 || || ||||| ||||| ||||| | || ||||||||| ||||| |||||||||| ||| Sbjct 1479601 AAGCCGAGCACCACCAGGCCCCGGGGCCCGAGGCGCCGCCGCAGCGCGTTCATCTGGGTG 1479542 Query 83477 TACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCC 83536 || |||||||||||| | ||||| ||||||| || |||||||| |||| || |||| Sbjct 1479541 TAGTCCCGGACCGTGGTGCCTCACAGGGACGTCACATTCTCGATAAGCAGCCCCTTGCCC 1479482 Query 83537 CG 83538 || Sbjct 1479481 CG 1479480 >seq117 Length=5941669 Score = 343 bits (380), Expect = 2e-89 Identities = 418/564 (74%), Gaps = 7/564 (1%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||| | |||||||| ||||| | | | | ||||||| |||| |||||||||| || Sbjct 3017269 AGCAGGACTTCGATGTCAGGCTCGATGTCAATGGTCTGGAAGCGACCGCTGTACCTGTGC 3017328 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 ||||| ||||||| |||||| ||||||||| ||||||| | || || |||||| Sbjct 3017329 ACGGGGCCACCGTCAGGGCCCACCGGGAACTTCTCAAAGTTCCGTACAACATCATTGCGG 3017388 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 | || ||||||| || ||||||| ||||||| ||| ||||| | |||||| | Sbjct 3017389 CCTACCGGAGACCCGGTGATGAGCTTGGGGTCGGTCATGAGCGCAGTGGCATCGTCGTTG 3017448 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 |||| ||||||||||| || |||||||||||||| || | | || |||||||| ||| Sbjct 3017449 GGCGGTGGCAGGGCCTCCCGCAGGAAGGCGAAGAGAGGGCGCGACCCCGCACCGTTCACC 3017508 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 || | ||||| |||||||| ||||| |||||||| || ||||||||||||| ||| Sbjct 3017509 TC-CGCTTCTTGAAGAGCACGAAGTTGGGCTCGAACCCACCACCAGGACGGACGTACTTG 3017567 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416 |||||| | ||||| | ||| |||||| || || || || |||||||| ||| || Sbjct 3017568 AGGGAATTCGGAATCTCTTCGTTCCTGGCGTTCTCTTGATGTCCAAACTGGTTGCACCGG 3017627 Query 83417 AACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTG 83476 | || ||||| ||||| ||||| | || |||||| |||||||||||||||| | ||| Sbjct 3017628 AGGCCGAGCACCACCAGGCCCCGGGGCCCGAGGCGCAGCTGCAGCTCGTTCAT-GGGGTG 3017686 Query 83477 TACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCC 83536 | | |||||||| | |||||||||||||| || ||| ||| ||| || || ||| Sbjct 3017687 CAGGGCAGGACCGTGGTGCCTCAGAGGGACGCCACATTCCCGACAAGC-AGCGCCTTCCC 3017745 Query 83537 CGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGCGTAC 83596 || | | |||| ||||||||| || || | || | | |||| || ||| | |||| Sbjct 3017746 CGCAGGGAGCCCGGGCTCACAGGCTC-CCGCAGGCCAGCAGGCGCGCCGAGCA---GTAC 3017801 Query 83597 ACAGATCTGGTCTCTGCCGCGGCA 83620 || || || | | |||| |||| Sbjct 3017802 ACCGACTGGGCCGCCGCCGGGGCA 3017825 >seq19 Length=20362211 Score = 307 bits (340), Expect = 1e-78 Identities = 391/534 (73%), Gaps = 7/534 (1%) Strand=Plus/Plus Query 83059 CAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCAC 83118 |||||| | |||||| | ||| | | | | ||||||| |||| | ||||||||| | Sbjct 9023585 CAGGGCTTGGATGTCAGCCTCAATGTCAATGGTCTGGAAGCGCAG-CTGTACCTGTATAT 9023643 Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 ||| | ||| || || ||| |||||||| |||||||||||| || | ||||| || Sbjct 9023644 GGGGGCACCGGTAGGGCCATCCAGGAACTTCTTGAAGTTCCAGGCAACATTGTTGCAACA 9023703 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 ||| ||||| | | || | || ||| ||| ||| | | ||||| ||| || Sbjct 9023704 CACCAGAGACACTGGA--GACCAGG---TCGGTCATGAGTGCCGTGGCGTCGTTGCTGGG 9023758 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTC 83298 || ||||||||||| || ||||||| |||||| || || | ||||||| ||||||| Sbjct 9023759 CGTTGGCAGGGCCTC-CGCAGGAAGGTGAAGAGAGGGTGCAACTTTGCACCATTGACCTG 9023817 Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAG 83358 | ||||| | |||||| ||||| |||| ||| | ||||| ||||||| ||| || Sbjct 9023818 GAACTTCCCAAAGAGCGAGAAGTTGGGCTGGAACTCACCACCAGGTCGGACGTACTTTAG 9023877 Query 83359 GGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAA 83418 |||| || ||||| | |||| |||||| ||||| || || |||||||| |||||||| Sbjct 9023878 GGAATTCAGAATCTCTTCGTTCTTGGCGTTCTCCTGATGCCCAAACTGGTTGCACGGGAA 9023937 Query 83419 CCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTA 83478 || ||||| ||||| | | | || |||||||||||||||| ||||||||| ||||| Sbjct 9023938 GCCGAGCACCACCAGGTCACTGGGCCCAAGGCGCCGCTGCAGCTTGTTCATCTGGGTGTA 9023997 Query 83479 CTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCCCG 83538 |||||||||||| | |||||||||||||| || |||| ||| |||| || |||||| Sbjct 9023998 GTCCCGGACCGTGGTGCCTCAGAGGGACGCCACATTCTTGATAAGCAGCGCCTTGCCCCG 9024057 Query 83539 TAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGC 83592 | | ||| || | | ||||| || || |||| || ||| | || ||| ||| Sbjct 9024058 CAGGGAGCTTAGGATTACAGGCTCCCCGCCGGCCATGGGGAGCGCCAAGAGGGC 9024111 >seq1 Length=21314971 Score = 302 bits (334), Expect = 5e-77 Identities = 269/337 (80%), Gaps = 0/337 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | |||||| |||| |||||||||||||| Sbjct 4784179 AGCAGGGCTTCGATGTCAGGCTCGATGTCAATAGTCTGGAAGCGACGGCTGTACCTGCGC 4784120 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || || ||||||| ||||||| ||||||||| |||||||| || || ||||| ||| Sbjct 4784119 ACAGGAACACCGTCAGGGCCCACCAGGAACTTCTCAAAGTTCCATGCAACATCGTTTCGG 4784060 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 || || |||||||||| ||||||| ||||||| ||| ||||| | |||||||| Sbjct 4784059 CATACCGGAGACCAGGTGATGAGCTTGGGGTCGGTCATGAGCGCAGTGGCATCGTCGCTG 4784000 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||||| ||||||||||| || |||||||||||||| || || | || |||||||| ||| Sbjct 4783999 GGCGCTGGCAGGGCCTCCCGCAGGAAGGCGAAGAGAGGGTGCGACCCCGCACCGTTCACC 4783940 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||||||||| ||||| |||||||| || ||||| ||||||| ||| Sbjct 4783939 TCGCACTTCTCGAAGAGCATGAAGTTGGGCTCGAACCCACCACCAGGTCGGACGTACTTG 4783880 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 |||||| ||| ||||| | |||| ||| || |||| Sbjct 4783879 AGGGAATTCAAAATCTCTTCGTTCTTGGCATTCTCCT 4783843 Score = 199 bits (220), Expect = 5e-46 Identities = 198/254 (78%), Gaps = 3/254 (1%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| ||||| ||||| | || |||| Sbjct 4783576 CCTGATGTCCAAACTGGTTGCACGGGAAGCCGAGCACCACCAGGCCCCGGGGCCCGAGGC 4783517 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||||||||||||||| ||||| |||||||||||| | |||||||||||||| | Sbjct 4783516 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTGGTGCCTCAGAGGGACGCCA 4783457 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | |||||||| |||| ||| |||||| ||| | || | ||||||||| || || |||| Sbjct 4783456 CATTCTCGATAAGCAGCACCTTGCCCCGCAAGGAACCCAGGCTCACAGGCTCCCCGCCGG 4783397 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATCTGGTCTCTGCCGCGGCAAGCTGTGCCG 83630 | ||| || || || ||||| || || || ||| | ||||| || ||| | || | Sbjct 4783396 CCAGCGGACGCGCGGAAAAGGCATATACCGA-CTG--AGCGGCCGCCGCTAGCCGAGCAG 4783340 Query 83631 CGTACTTGGCACAG 83644 | || |||| ||| Sbjct 4783339 CACACATGGCGCAG 4783326 >seq161 Length=4602354 Score = 123 bits (136), Expect = 3e-23 Identities = 207/291 (71%), Gaps = 15/291 (5%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| |||||| || ||| ||| Sbjct 1612201 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTTGCCTCGCGCCTGC 1612259 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || |||||||||| || ||| | ||||||| Sbjct 1612260 TGGTGCACCTGTTCCCCGAGCTCTTCACGCACGAGAACCTGCGCAAGCAGTACAACTGCA 1612319 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||| ||| |||||||| |||| || |||||| ||| | | |||| ||||| Sbjct 1612320 GCGGTTCCCTGGGCAAGAAGCAG-CTAGACCCGTCCCGCATCAAGCTCATCCGCCACTAC 1612378 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGC----AACGAGCGCGTGTGGATCACAAAGTTCCT 50643 |||||| |||| ||||| ||||| ||||| ||||| |||| | ||||| | Sbjct 1612379 GTGCAGATGCTTTACCCG----CGCGCCAAAAACGACCGCGTCTGGACCCTGGAGTTCGT 1612434 Query 50644 GGCGTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 || |||||||||||||| |||||||| | |||||| || |||||| Sbjct 1612435 GGGCAAACTGGACGAGCGCTGTCGGCGCCG--GGACACGGAGCAGAGGCGC 1612483 >seq69 Length=11786368 Score = 93.3 bits (102), Expect = 5e-14 Identities = 188/271 (69%), Gaps = 15/271 (6%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || ||| | ||| || ||| ||| || |||||| ||| ||| Sbjct 11355318 GCAGCTGCGCAGCATCTACAAGAGCA-GCCTGTCCATCGGCAGCTTCGCCTGGCGCCTGC 11355260 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || | |||| |||||||| | |||||||||| || ||| | ||||||| Sbjct 11355259 TGGTGCACCTTTTTCTCGAGCTCTTCAAGCATGAGAACCTGCGCAAGCAGTGCAACTGCA 11355200 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGC-GCTTGCTCCGGCACTA 50586 ||||||| |||||||| |||| || ||| | || || ||| | || ||||| Sbjct 11355199 GCGGCTCCCTGGGCAAGAAGCAG-CTAGACTGGTCCTGCATGAAGCT--CATCGCCACTA 11355143 Query 50587 TGTGCAGTTGCTGCACCCGGCGGCGCGC----AACGAGCGCGTGTGGATCACAAAGTTCC 50642 ||||||| |||| |||| |||||| ||| | ||||| |||| | ||||| Sbjct 11355142 TGTGCAGCTGCTCTACCC----GCGCGCCAAAAACAACCGCGTCTGGACCCTGGAGTTCG 11355087 Query 50643 TGGCGTGCCTGGACGAGCGCTGCCGGCGCCG 50673 ||| ||||||||| |||| |||||||| Sbjct 11355086 TGGGCAAACTGGACGAGAGCTGTCGGCGCCG 11355056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608742343126240