Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq192 419 3e-112
seq117 343 2e-89
seq19 307 1e-78
seq1 302 5e-77
seq161 123 3e-23
seq69 93.3 5e-14
>seq192
Length=4000003
Score = 419 bits (464), Expect = 3e-112
Identities = 383/482 (79%), Gaps = 1/482 (0%)
Strand=Plus/Minus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
|| ||||| |||||||| ||||| | | | | ||||||| ||||| ||||||||||||||
Sbjct 1479960 AGTAGGGCTTCGATGTCAGGCTCGATGTCAATGGTCTGGAAGCGGCGGCTGTACCTGCGC 1479901
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176
|| || || |||| ||||| | ||||||||| |||||||| || || ||||| |||
Sbjct 1479900 ACAGGAACACCATCAGGGCCCACGAGGAACTTCTCAAAGTTCCATGCAACATCGTTTCGG 1479841
Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236
|| || |||||||||| ||||||| ||||||| ||| ||||| | ||||||||
Sbjct 1479840 CATACCGGAGACCAGGTGATGAGCTTGGGGTCGGTCATGAGCGCAGTGGCATCGTCGCTG 1479781
Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296
||||| ||||||||||| || |||||||||||||| || || | || |||||||| |||
Sbjct 1479780 GGCGCTGGCAGGGCCTCCCGCAGGAAGGCGAAGAGAGGGTGCGACCCCGCACCGTTCACC 1479721
Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356
|||||||||||||||| ||| ||||| |||||||| || ||||| ||||| | |||
Sbjct 1479720 TCGCACTTCTCGAAGAACATGAAGTTGGGCTCGAACCCACCACCAGGTCGGAC-TACTTG 1479662
Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416
|||||| ||| ||||| | |||| |||||| ||||| || || || ||||| ||||||
Sbjct 1479661 AGGGAATTCAAAATCTCTTCGTTCTTGGCGTTCTCCTGATGTCCAAAGTGGTTGCACGGG 1479602
Query 83417 AACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTG 83476
|| || ||||| ||||| ||||| | || ||||||||| ||||| |||||||||| |||
Sbjct 1479601 AAGCCGAGCACCACCAGGCCCCGGGGCCCGAGGCGCCGCCGCAGCGCGTTCATCTGGGTG 1479542
Query 83477 TACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCC 83536
|| |||||||||||| | ||||| ||||||| || |||||||| |||| || ||||
Sbjct 1479541 TAGTCCCGGACCGTGGTGCCTCACAGGGACGTCACATTCTCGATAAGCAGCCCCTTGCCC 1479482
Query 83537 CG 83538
||
Sbjct 1479481 CG 1479480
>seq117
Length=5941669
Score = 343 bits (380), Expect = 2e-89
Identities = 418/564 (74%), Gaps = 7/564 (1%)
Strand=Plus/Plus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
|||||| | |||||||| ||||| | | | | ||||||| |||| |||||||||| ||
Sbjct 3017269 AGCAGGACTTCGATGTCAGGCTCGATGTCAATGGTCTGGAAGCGACCGCTGTACCTGTGC 3017328
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176
||||| ||||||| |||||| ||||||||| ||||||| | || || ||||||
Sbjct 3017329 ACGGGGCCACCGTCAGGGCCCACCGGGAACTTCTCAAAGTTCCGTACAACATCATTGCGG 3017388
Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236
| || ||||||| || ||||||| ||||||| ||| ||||| | |||||| |
Sbjct 3017389 CCTACCGGAGACCCGGTGATGAGCTTGGGGTCGGTCATGAGCGCAGTGGCATCGTCGTTG 3017448
Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296
|||| ||||||||||| || |||||||||||||| || | | || |||||||| |||
Sbjct 3017449 GGCGGTGGCAGGGCCTCCCGCAGGAAGGCGAAGAGAGGGCGCGACCCCGCACCGTTCACC 3017508
Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356
|| | ||||| |||||||| ||||| |||||||| || ||||||||||||| |||
Sbjct 3017509 TC-CGCTTCTTGAAGAGCACGAAGTTGGGCTCGAACCCACCACCAGGACGGACGTACTTG 3017567
Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416
|||||| | ||||| | ||| |||||| || || || || |||||||| ||| ||
Sbjct 3017568 AGGGAATTCGGAATCTCTTCGTTCCTGGCGTTCTCTTGATGTCCAAACTGGTTGCACCGG 3017627
Query 83417 AACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTG 83476
| || ||||| ||||| ||||| | || |||||| |||||||||||||||| | |||
Sbjct 3017628 AGGCCGAGCACCACCAGGCCCCGGGGCCCGAGGCGCAGCTGCAGCTCGTTCAT-GGGGTG 3017686
Query 83477 TACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCC 83536
| | |||||||| | |||||||||||||| || ||| ||| ||| || || |||
Sbjct 3017687 CAGGGCAGGACCGTGGTGCCTCAGAGGGACGCCACATTCCCGACAAGC-AGCGCCTTCCC 3017745
Query 83537 CGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGCGTAC 83596
|| | | |||| ||||||||| || || | || | | |||| || ||| | ||||
Sbjct 3017746 CGCAGGGAGCCCGGGCTCACAGGCTC-CCGCAGGCCAGCAGGCGCGCCGAGCA---GTAC 3017801
Query 83597 ACAGATCTGGTCTCTGCCGCGGCA 83620
|| || || | | |||| ||||
Sbjct 3017802 ACCGACTGGGCCGCCGCCGGGGCA 3017825
>seq19
Length=20362211
Score = 307 bits (340), Expect = 1e-78
Identities = 391/534 (73%), Gaps = 7/534 (1%)
Strand=Plus/Plus
Query 83059 CAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCAC 83118
|||||| | |||||| | ||| | | | | ||||||| |||| | ||||||||| |
Sbjct 9023585 CAGGGCTTGGATGTCAGCCTCAATGTCAATGGTCTGGAAGCGCAG-CTGTACCTGTATAT 9023643
Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178
||| | ||| || || ||| |||||||| |||||||||||| || | ||||| ||
Sbjct 9023644 GGGGGCACCGGTAGGGCCATCCAGGAACTTCTTGAAGTTCCAGGCAACATTGTTGCAACA 9023703
Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238
||| ||||| | | || | || ||| ||| ||| | | ||||| ||| ||
Sbjct 9023704 CACCAGAGACACTGGA--GACCAGG---TCGGTCATGAGTGCCGTGGCGTCGTTGCTGGG 9023758
Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTC 83298
|| ||||||||||| || ||||||| |||||| || || | ||||||| |||||||
Sbjct 9023759 CGTTGGCAGGGCCTC-CGCAGGAAGGTGAAGAGAGGGTGCAACTTTGCACCATTGACCTG 9023817
Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAG 83358
| ||||| | |||||| ||||| |||| ||| | ||||| ||||||| ||| ||
Sbjct 9023818 GAACTTCCCAAAGAGCGAGAAGTTGGGCTGGAACTCACCACCAGGTCGGACGTACTTTAG 9023877
Query 83359 GGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAA 83418
|||| || ||||| | |||| |||||| ||||| || || |||||||| ||||||||
Sbjct 9023878 GGAATTCAGAATCTCTTCGTTCTTGGCGTTCTCCTGATGCCCAAACTGGTTGCACGGGAA 9023937
Query 83419 CCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTA 83478
|| ||||| ||||| | | | || |||||||||||||||| ||||||||| |||||
Sbjct 9023938 GCCGAGCACCACCAGGTCACTGGGCCCAAGGCGCCGCTGCAGCTTGTTCATCTGGGTGTA 9023997
Query 83479 CTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCCCG 83538
|||||||||||| | |||||||||||||| || |||| ||| |||| || ||||||
Sbjct 9023998 GTCCCGGACCGTGGTGCCTCAGAGGGACGCCACATTCTTGATAAGCAGCGCCTTGCCCCG 9024057
Query 83539 TAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGC 83592
| | ||| || | | ||||| || || |||| || ||| | || ||| |||
Sbjct 9024058 CAGGGAGCTTAGGATTACAGGCTCCCCGCCGGCCATGGGGAGCGCCAAGAGGGC 9024111
>seq1
Length=21314971
Score = 302 bits (334), Expect = 5e-77
Identities = 269/337 (80%), Gaps = 0/337 (0%)
Strand=Plus/Minus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
|||||||| |||||||| ||||| | | | | |||||| |||| ||||||||||||||
Sbjct 4784179 AGCAGGGCTTCGATGTCAGGCTCGATGTCAATAGTCTGGAAGCGACGGCTGTACCTGCGC 4784120
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176
|| || ||||||| ||||||| ||||||||| |||||||| || || ||||| |||
Sbjct 4784119 ACAGGAACACCGTCAGGGCCCACCAGGAACTTCTCAAAGTTCCATGCAACATCGTTTCGG 4784060
Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236
|| || |||||||||| ||||||| ||||||| ||| ||||| | ||||||||
Sbjct 4784059 CATACCGGAGACCAGGTGATGAGCTTGGGGTCGGTCATGAGCGCAGTGGCATCGTCGCTG 4784000
Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296
||||| ||||||||||| || |||||||||||||| || || | || |||||||| |||
Sbjct 4783999 GGCGCTGGCAGGGCCTCCCGCAGGAAGGCGAAGAGAGGGTGCGACCCCGCACCGTTCACC 4783940
Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356
|||||||||||||||||||| ||||| |||||||| || ||||| ||||||| |||
Sbjct 4783939 TCGCACTTCTCGAAGAGCATGAAGTTGGGCTCGAACCCACCACCAGGTCGGACGTACTTG 4783880
Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393
|||||| ||| ||||| | |||| ||| || ||||
Sbjct 4783879 AGGGAATTCAAAATCTCTTCGTTCTTGGCATTCTCCT 4783843
Score = 199 bits (220), Expect = 5e-46
Identities = 198/254 (78%), Gaps = 3/254 (1%)
Strand=Plus/Minus
Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450
|||| || || |||||||| |||||||| || ||||| ||||| ||||| | || ||||
Sbjct 4783576 CCTGATGTCCAAACTGGTTGCACGGGAAGCCGAGCACCACCAGGCCCCGGGGCCCGAGGC 4783517
Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510
|||||||||||||||||||||| ||||| |||||||||||| | |||||||||||||| |
Sbjct 4783516 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTGGTGCCTCAGAGGGACGCCA 4783457
Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570
| |||||||| |||| ||| |||||| ||| | || | ||||||||| || || ||||
Sbjct 4783456 CATTCTCGATAAGCAGCACCTTGCCCCGCAAGGAACCCAGGCTCACAGGCTCCCCGCCGG 4783397
Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATCTGGTCTCTGCCGCGGCAAGCTGTGCCG 83630
| ||| || || || ||||| || || || ||| | ||||| || ||| | || |
Sbjct 4783396 CCAGCGGACGCGCGGAAAAGGCATATACCGA-CTG--AGCGGCCGCCGCTAGCCGAGCAG 4783340
Query 83631 CGTACTTGGCACAG 83644
| || |||| |||
Sbjct 4783339 CACACATGGCGCAG 4783326
>seq161
Length=4602354
Score = 123 bits (136), Expect = 3e-23
Identities = 207/291 (71%), Gaps = 15/291 (5%)
Strand=Plus/Plus
Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468
||| ||||||| || |||| | ||| || ||| ||| |||||| || ||| |||
Sbjct 1612201 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTTGCCTCGCGCCTGC 1612259
Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528
| ||| || |||| || |||||||| || |||||||||| || ||| | |||||||
Sbjct 1612260 TGGTGCACCTGTTCCCCGAGCTCTTCACGCACGAGAACCTGCGCAAGCAGTACAACTGCA 1612319
Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587
||| ||| |||||||| |||| || |||||| ||| | | |||| |||||
Sbjct 1612320 GCGGTTCCCTGGGCAAGAAGCAG-CTAGACCCGTCCCGCATCAAGCTCATCCGCCACTAC 1612378
Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGC----AACGAGCGCGTGTGGATCACAAAGTTCCT 50643
|||||| |||| ||||| ||||| ||||| ||||| |||| | ||||| |
Sbjct 1612379 GTGCAGATGCTTTACCCG----CGCGCCAAAAACGACCGCGTCTGGACCCTGGAGTTCGT 1612434
Query 50644 GGCGTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693
|| |||||||||||||| |||||||| | |||||| || ||||||
Sbjct 1612435 GGGCAAACTGGACGAGCGCTGTCGGCGCCG--GGACACGGAGCAGAGGCGC 1612483
>seq69
Length=11786368
Score = 93.3 bits (102), Expect = 5e-14
Identities = 188/271 (69%), Gaps = 15/271 (6%)
Strand=Plus/Minus
Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468
||| ||||||| || ||| | ||| || ||| ||| || |||||| ||| |||
Sbjct 11355318 GCAGCTGCGCAGCATCTACAAGAGCA-GCCTGTCCATCGGCAGCTTCGCCTGGCGCCTGC 11355260
Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528
| ||| || | |||| |||||||| | |||||||||| || ||| | |||||||
Sbjct 11355259 TGGTGCACCTTTTTCTCGAGCTCTTCAAGCATGAGAACCTGCGCAAGCAGTGCAACTGCA 11355200
Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGC-GCTTGCTCCGGCACTA 50586
||||||| |||||||| |||| || ||| | || || ||| | || |||||
Sbjct 11355199 GCGGCTCCCTGGGCAAGAAGCAG-CTAGACTGGTCCTGCATGAAGCT--CATCGCCACTA 11355143
Query 50587 TGTGCAGTTGCTGCACCCGGCGGCGCGC----AACGAGCGCGTGTGGATCACAAAGTTCC 50642
||||||| |||| |||| |||||| ||| | ||||| |||| | |||||
Sbjct 11355142 TGTGCAGCTGCTCTACCC----GCGCGCCAAAAACAACCGCGTCTGGACCCTGGAGTTCG 11355087
Query 50643 TGGCGTGCCTGGACGAGCGCTGCCGGCGCCG 50673
||| ||||||||| |||| ||||||||
Sbjct 11355086 TGGGCAAACTGGACGAGAGCTGTCGGCGCCG 11355056
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 608742343126240
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