Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq599 244 7e-60 seq13 95.1 8e-15 >seq599 Length=1005688 Score = 244 bits (270), Expect = 7e-60 Identities = 526/775 (68%), Gaps = 10/775 (1%) Strand=Plus/Minus Query 96898 TAAACAGCCATGGGCATTTTTATGCTAGGGTAAGGGTTATAGTTTTCCAGAATAATGTCA 96957 ||||||||||| |||||| || | || | || || | ||| | ||| ||| Sbjct 754688 TAAACAGCCATTTCCATTTTAATAGTTGGATGCGGATTGCACCCTTCAACCTTAAAGTCT 754629 Query 96958 TTTGCTTTAAAATCATCAATAGATGCAATCTTTCTGGCAAACTTTAGTGTTGGGAAAGGC 97017 | ||||| || |||||||| ||| | || || ||| || |||||||||| Sbjct 754628 TCAGCTTTGAAGTCATCAATTTTCTCAACTTGTCGAAGAATCTTGAGCTTTGGGAAAGGT 754569 Query 97018 CTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCA 97077 ||||| |||| |||||| | | || | | |||||||||| ||||| || ||| Sbjct 754568 CTGGGTTCTCGCTGAAGCTGAATTTTCAGTGGCTTGATGTGATTCAGGTAAATATGGGCA 754509 Query 97078 TCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAA 97137 ||||| ||||| || | ||| || || || | | |||| || ||||||| | Sbjct 754508 TCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGCGCGATCACGTAC 754449 Query 97138 GTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTT 97197 || | | | ||||| || |||| |||||||| ||||| ||||| || ||||||| Sbjct 754448 GTGAGCAAGGTGTAGCTGGCGGTGTTGAAAGGCACACCTAGGCCCATGTCTCCTGATCTC 754389 Query 97198 TGATATAACTGACAGGAAAGCTTTCCAT-CACACACATAAAACTGACTCAATACATGACA 97256 || | | ||| ||||| |||| |||| ||| | | || ||||| | | |||| || Sbjct 754388 TGGTGCAGCTGGCAGGACAGCTCACCATTCAC-CTCGTAGAACTGGCAGAGGGCATGGCA 754330 Query 97257 GGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTCT 97316 || |||| |||||| |||| |||| ||||||||| ||||| | |||||||| Sbjct 754329 TGGAGGCAGCGCCATCAGAGGAAGATCTCTTGGATTCCAAGCGCACATGATGATTCTTCT 754270 Query 97317 ATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTT-TAATTGATCAACGCCTTCTC 97375 || ||||| || | ||||| | | | | || || || ||| ||||| |||| || Sbjct 754269 GTCATCAGGGTTGGTTTTGATGGTGTCAGTCA-CTCTTTGTAGTTGGTCAACTCCTTGTC 754211 Query 97376 CACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCAT 97435 | ||||| | | | || |||||||| |||||||||||||| ||||| |||| Sbjct 754210 CTGAATAATCTGAATCCATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCAT 754151 Query 97436 AAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAA-ACCAAGCTTATCTAAATAGGAC 97494 |||| || || | ||| ||||||||||| | |||| |||||| |||| | | || Sbjct 754150 AAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAAGC-TATCCAGAAAGTCT 754092 Query 97495 CTAGATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAGCTCTTT-GCTGTCAGT 97553 | |||||||| |||||||| || | ||| || | | |||||||| ||| || | Sbjct 754091 CGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCTTTC--T 754034 Query 97554 AGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATAC-TCTCTTAG 97612 | ||| ||||||| |||| ||| || |||| |||||| |||| || || | || | Sbjct 754033 GGGTCCCTTGATAAAGCACAGCAACTCCTCCAAAACACCCTTCCAGAACACAACGTTTGG 753974 Query 97613 TTGTTAAGAGAGGAAAATCCTTTTCTAAGCTGTATCTAGACTGCATTCCAAAAAC 97667 |||| | |||||||| || | | | |||||| | | |||||| || || || Sbjct 753973 TTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCCGAACAC 753919 >seq13 Length=13416947 Score = 95.1 bits (104), Expect = 8e-15 Identities = 98/126 (78%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 |||||||| |||||||||||||| ||||| |||||||| || || | ||| ||||||||| Sbjct 11478297 TATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCT 11478238 Query 97462 CTATCACAGAA-ACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTG 97520 || | |||| |||||| |||| | | || | |||||||| |||||||| || | Sbjct 11478237 CTGGCGGAGAATCCCAAGC-TATCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTT 11478179 Query 97521 CACACC 97526 ||| || Sbjct 11478178 CACTCC 11478173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346753755666920