Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq683 95.1 2e-14 seq407 91.5 2e-13 seq38 91.5 2e-13 >seq683 Length=714717 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || | ||||| || || || | ||| | || | | | Sbjct 111602 ATGCAGATCTTTGTGAAGACCCTCATGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 111543 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| ||||||||||| || || ||||| ||||||||||| Sbjct 111542 GACACCATTGAGAATGTTAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGATCAG 111483 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| || ||| | | |||||| | || || | ||| || || Sbjct 111482 CAGCGTCTGATATTTGCCGGTAAATAGCTGGAGGATGGCCGCACGCTCTCAGACTACAAC 111423 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 || || ||||| || || |||| |||| | || | |||||||| |||| Sbjct 111422 ATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGAGGTGGCATTA 111371 >seq407 Length=3256691 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| || || ||||| || || || | ||| | || | || Sbjct 904446 AATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAA 904387 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | ||| ||||||||||| || || ||||| |||||||| || Sbjct 904386 TGACACCATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCA 904327 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || || ||||| | | || | |||||| | || || | ||| || || Sbjct 904326 GCAGCGTCTGATATTTGCCAGCCAGCAGCTGGAGGATGGCCGCACGCTCTCAGACTACAA 904267 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 || || ||||| || || |||| |||| | || | |||||||| |||| Sbjct 904266 CATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGAGGTGGCATTA 904214 >seq38 Length=10264441 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || | ||||| || || || | ||| | || || | Sbjct 9540647 ATGCAGATCTTTGTGAAGACCCTCATGGGCAAGACCATCACCCTTGAGGTCGA-GCCCGT 9540705 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| ||||||||||| || || ||||| |||||||| || Sbjct 9540706 GACACCATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCAG 9540765 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| || ||||| | |||||| | | ||| | ||| || || Sbjct 9540766 CAGCGTCTGATATTTGCCGGCAAACAGCTGGAGGATGGCCACACACTCTCAGACTACAAC 9540825 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 || || ||||| || || |||| |||| | || | |||||||| |||| Sbjct 9540826 ATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGAGGTGGCATTA 9540877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755388424460800