Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq407 102 9e-17 seq849 100 3e-16 seq542 100 3e-16 seq170 100 3e-16 seq73 100 3e-16 seq19 100 3e-16 seq1 100 3e-16 seq38 91.5 2e-13 seq503 89.7 6e-13 >seq407 Length=3256691 Score = 102 bits (112), Expect = 9e-17 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| ||| || || || ||||| || | || || || | Sbjct 904231 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGCGTGCGGCCA 904290 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || ||||||| | || ||||| || ||||||||||| | || | | ||||||| Sbjct 904291 TCCTCCAGCTGCTGGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 904350 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 | | ||| |||| | ||||| || | | ||||| | | || || || | ||||| Sbjct 904351 T-CTTGAATTTTGGCTTTGACATTCTCAATGGTGTCATTGGGCTCGACCTCAAGGGTGAT 904409 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTT 43185 ||| |||||||| || ||||| |||||||| ||||||| Sbjct 904410 GGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATTT 904447 >seq849 Length=318894 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 134874 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 134933 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 134934 ATACTAACGAGGA 134946 >seq542 Length=1979518 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 729636 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 729577 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 729576 ATACTAACGAGGA 729564 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 682435 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 682494 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 682495 TACTAACGAGGA 682506 >seq170 Length=4466143 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 3915212 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 3915271 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 3915272 ATACTAACGAGGA 3915284 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 3905387 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 3905446 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 3905447 TACTAACGAGGA 3905458 >seq73 Length=7711548 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 6031450 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 6031391 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 6031390 ATACTAACGAGGA 6031378 >seq19 Length=20362211 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 13712922 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 13712863 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 13712862 ATACTAACGAGGA 13712850 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 16130293 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 16130234 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 16130233 TACTAACGAGGA 16130222 >seq1 Length=21314971 Score = 100 bits (110), Expect = 3e-16 Identities = 154/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| ||| || || || ||||| || | ||||| || | Sbjct 18631144 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTG--AGAGTGCGGCCA 18631087 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || ||||| |||||||| ||||| || ||||||||||| | || | | |||||| Sbjct 18631086 TCCTCCAGCTGTTTACCAGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCTTCCTTG 18631027 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 | ||| |||| | ||||| || | ||||| || | || || || | ||||| Sbjct 18631026 T-ATTGAATTTTGGCTTTGACATTCTTAATGGTGTCACTGGGCTCGACCTCAAGGGTGAT 18630968 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| |||||||| | ||||| |||||||| ||||| Sbjct 18630967 GGTCTTGCCCGTGACAGTCTTCACAAAGATCTGCAT 18630932 >seq38 Length=10264441 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/216 (70%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| ||| || || || ||||| || | || || | | Sbjct 9540860 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGTGTGTGGCCA 9540801 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || ||||| || || || ||||| || ||||||||||| | || | | ||||||| Sbjct 9540800 TCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 9540741 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 | | ||| |||| | ||||| || | | ||||| | | || || || | ||||| Sbjct 9540740 T-CTTGAATTTTGGCTTTGACATTCTCAATGGTGTCAC-GGGCTCGACCTCAAGGGTGAT 9540683 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| |||||| | || ||||| |||||||| ||||| Sbjct 9540682 GGTCTTGCCCATGAGGGTCTTCACAAAGATCTGCAT 9540647 >seq503 Length=1449082 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| |||| |||| || ||| || || || |||||||||| ||||| | | Sbjct 1047250 CGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCAGCCA 1047191 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || ||||| | ||||||||||| || | || ||||| Sbjct 1047190 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGG--GGGATGCCTTCCTTA 1047133 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | | | | ||||| || | ||||| || | |||||| Sbjct 1047132 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTAGGCTCCACCTCCAAGGTGATG 1047073 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTAC 43189 || ||||| || || ||||| || ||||| | |||||| || Sbjct 1047072 GTCTTGCCGGTCAGGGTCTTCACGAAGATATACATTTTGAC 1047032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571766450915680