Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq25 102 1e-16 seq434 98.7 1e-15 seq573 95.1 2e-14 seq69 95.1 2e-14 seq19 95.1 2e-14 seq181 89.7 8e-13 seq118 89.7 8e-13 seq4 89.7 8e-13 seq3 89.7 8e-13 seq93 87.8 3e-12 seq64 87.8 3e-12 seq292 86.0 9e-12 seq63 86.0 9e-12 seq290 84.2 3e-11 >seq25 Length=15232693 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| | |||| ||| | |||||| || ||| || || || || || || Sbjct 12145241 CCACCACGAAGTCTCAGCACCAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAGA 12145299 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||| | | ||| |||| ||| || |||||| | |||| |||||||||||| ||||| Sbjct 12145300 CAGAGTACATCCATCTTCTAGTTGCTTGCCAGCATAGATCAGTCTTTGCTGATCAGGAGG 12145359 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 12145360 AATTCCTTCCTTATCCTG 12145377 >seq434 Length=1819716 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| || || | ||| | |||||| || || || ||||| || || Sbjct 1331282 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTATAGTCAGAC 1331341 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || | ||| || |||||||| |||| |||||||||||| |||||| Sbjct 1331342 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 1331401 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 1331402 ATTCCTTCCTTATCCTG 1331418 >seq573 Length=1150292 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| || || | ||| | |||||| || || || || || || || Sbjct 200470 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 200529 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || | ||| || |||||||| |||| |||||||||||| |||||| Sbjct 200530 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 200589 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 200590 ATTCCTTCCTTATCCTG 200606 >seq69 Length=11786368 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| || || | ||| | |||||| || || || || || || || Sbjct 9297237 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 9297178 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || | ||| || |||||||| |||| |||||||||||| |||||| Sbjct 9297177 AAAGTACCTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 9297118 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| |||||||| Sbjct 9297117 ATGCCTTCCTTATCTTG 9297101 >seq19 Length=20362211 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTG 146108 |||||| | |||||| || || | ||| | |||| | || ||| || || || || || | Sbjct 6160572 TCCACCACAAAGTCTCAACACAAGATGAAGAGTAAACTCCTTTTGA-ATGTTGTAGTCAG 6160514 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | ||| | | || || | ||| || |||||||| |||| |||||||||||| |||| Sbjct 6160513 ACAAAGTACGTCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAG 6160454 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||||||||| || Sbjct 6160453 GAATTCCTTCTTTATCCTG 6160435 >seq181 Length=4179193 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| || || | ||| | |||||| || || || || || || || Sbjct 2580467 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 2580526 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || | ||| || |||||||| |||| |||||||||||| ||| || Sbjct 2580527 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGACGA 2580586 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 2580587 ATTCCTTCCTTATCCTG 2580603 >seq118 Length=10303814 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| || || | ||| | |||||| || || || || | || | Sbjct 8799287 CCACCACAAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGCAGTCAGGC 8799346 Query 146111 AGAGTTCTGC-TATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||| ||| |||| || | ||| || ||||||||||||| ||||| |||||| ||||| Sbjct 8799347 AGAGTA-TGCATATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTACTGATCAGGAGG 8799405 Query 146170 AATTCCTTCTTTATCTTG 146187 || |||||||||||| || Sbjct 8799406 AACTCCTTCTTTATCCTG 8799423 >seq4 Length=15321207 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | || ||| || || | ||| | |||||| || || || || || || || Sbjct 5243222 CCACCACGAAATCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 5243163 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || | ||| || |||||||| |||| |||||||||||| |||||| Sbjct 5243162 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 5243103 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 5243102 ATTCCTTCCTTATCCTG 5243086 >seq3 Length=16812482 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| | || | ||| | |||||| || || || || || || || Sbjct 14706844 CCACCACGAAGTCTCAGCACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 14706903 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || | ||| || |||||||| |||| |||||||||||| |||||| Sbjct 14706904 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 14706963 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 14706964 ATTCCTTCCTTATCCTG 14706980 >seq93 Length=13160294 Score = 87.8 bits (96), Expect = 3e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 146059 AAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTC 146117 |||||| || || | ||| | |||||| || ||| || || || || || | | ||| | Sbjct 4738352 AAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAGGCAAAGTAC 4738410 Query 146118 TGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTT 146177 | ||| || | ||| || |||||||| |||| |||||||||||| ||||||||||||| Sbjct 4738411 AACCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTT 4738470 Query 146178 CTTTATCTTG 146187 | ||||| || Sbjct 4738471 CCTTATCCTG 4738480 >seq64 Length=8039362 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 146052 CACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAA 146111 |||| | |||||| || || | ||| | |||||| || || || || || || || | Sbjct 5682516 CACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACA 5682457 Query 146112 GAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAA 146171 ||| | | ||| || | ||| || |||||| | |||| |||||||||||| ||||||| Sbjct 5682456 AAGTACGTCCATCTTCCAGTTGCTTGCCAGCAGAGATCAGTCTTTGCTGATCAGGAGGAA 5682397 Query 146172 TTCCTTCTTTATCTTG 146187 ||||||| ||||| || Sbjct 5682396 TTCCTTCCTTATCCTG 5682381 >seq292 Length=4239571 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| |||||| || || | ||| | |||||| || || ||||| || || || Sbjct 2943961 CCACCATGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATATTGTAGTCAGAC 2944020 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | || || | || || |||||||| |||| |||||||||||| |||||| Sbjct 2944021 AAAGTGCGTCCATATTCCAGTTCCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 2944080 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 2944081 ATTCCTTCCTTATCCTG 2944097 >seq63 Length=8132274 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| |||||| || || | ||| | |||||| || || || || || || || Sbjct 6710334 CCACCAAGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 6710393 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | | | || | ||| || |||||||| |||| |||||||||||| |||||| Sbjct 6710394 AAAGTACGTCCACCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 6710453 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 6710454 ATTCCTTCCTTATCCTG 6710470 >seq290 Length=2922102 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | | |||| || ||| || || || || || || Sbjct 1757541 CCACCACGAAGTCTCAACACAAGATGAAGAATAGACTCCTTTTGA-ATGTTGTAGTCAGA 1757599 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| || |||||||| |||| ||||||||||| ||| Sbjct 1757600 CAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTTTGCTGATCACAAGG 1757659 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||||||||| || Sbjct 1757660 AATTCCTTCTTTATCCTG 1757677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743459891563520