Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq407 116 2e-21
seq683 105 4e-18
seq38 104 2e-17
seq828 98.7 6e-16
seq503 98.7 6e-16
seq1 93.3 3e-14
seq247 91.5 1e-13
seq585 89.7 3e-13
seq573 89.7 3e-13
seq132 89.7 3e-13
seq3 89.7 3e-13
seq181 87.8 1e-12
seq170 87.8 1e-12
>seq407
Length=3256691
Score = 116 bits (128), Expect = 2e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | |||||||||||| | || |||||||| ||||||||||| ||
Sbjct 904219 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 904278
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
||| ||| | || |||| ||||| || || || || || ||||||||||| ||
Sbjct 904279 AGCGTGCGGCCATCCTCCAGCTGCTGGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGG 904338
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341
| | ||||||||| || ||| ||||| | || | || | || | | |||||
Sbjct 904339 ATACCCTCCTTGTCTTGAAT-TTTGGCTTTGACATTCTCAATGGTGTCATTGGGCTCGAC 904397
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | |||||||| ||||| ||||| || |||||||||||||||||
Sbjct 904398 CTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 904445
>seq683
Length=714717
Score = 105 bits (116), Expect = 4e-18
Identities = 164/232 (71%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | |||||||||||| | || |||||||| ||||||||||| ||
Sbjct 111376 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 111435
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
||| ||| | || |||| || || || || || || || |||||||| || ||
Sbjct 111436 AGCGTGCGGCCATCCTCCAGCTATTTACCGGCAAATATCAGACGCTGCTGATCAGGTGGG 111495
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341
| | ||||||||| || ||| ||||| | || | || | || | | |||||
Sbjct 111496 ATACCCTCCTTGTCTTGAAT-TTTGGCTTTAACATTCTCAATGGTGTCACTGGGCTCGAC 111554
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393
|| | |||||||| ||||| |||| || |||||||||||||||||| ||
Sbjct 111555 CTCAAGGGTGATGGTCTTGCCCATGAGGGTCTTCACAAAGATCTGCATCTCT 111606
>seq38
Length=10264441
Score = 104 bits (114), Expect = 2e-17
Identities = 166/234 (71%), Gaps = 7/234 (3%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | |||||||||||| | || |||||||| ||||||||||| ||
Sbjct 9540872 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 9540813
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || | || |||| ||| ||||| || || || || ||||||||||| ||
Sbjct 9540812 AGTGTGTGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 9540753
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAAT--CGGTCGATTCG 34339
| | ||||||||| || ||| ||||| | || | || | | ||| | |||
Sbjct 9540752 ATACCCTCCTTGTCTTGAAT-TTTGGCTTTGACATTCTCAATGGTGTCACGGGC---TCG 9540697
Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393
|| || | |||||||| ||||| |||| || |||||||||||||||||| ||
Sbjct 9540696 ACCTCAAGGGTGATGGTCTTGCCCATGAGGGTCTTCACAAAGATCTGCATCTCT 9540643
>seq828
Length=339631
Score = 98.7 bits (108), Expect = 6e-16
Identities = 153/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 34171 CAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACG 34230
||| | ||| |||||||| | ||| |||||||| ||||||||||| || || |
Sbjct 9787 CAGACGCAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCT 9728
Query 34231 GTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTC 34290
| | || |||| |||||||||||| || ||||||| ||||||||| ||| | || ||
Sbjct 9727 GCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCACGGGGGATGCCTTC 9668
Query 34291 CTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGT 34350
|| || ||||| ||| | || | || | || | | || || |||| ||
Sbjct 9667 CTAATCCTGGATCTTGGTCTTCACATATTCGATGGTGTCACTGGGCTCCACCTCCAGGGT 9608
Query 34351 GATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| |||| |||| |||| | || ||||| |||| ||||||
Sbjct 9607 GGTGGTCTTGCTGGTGGGGGTCTTCACGAAGACCTGCAT 9569
>seq503
Length=1449082
Score = 98.7 bits (108), Expect = 6e-16
Identities = 150/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236
||| |||||||| | || |||||||| |||||||| || || || | | | ||
Sbjct 1047248 CAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCAGCCATC 1047189
Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296
|||| |||||||||||| || ||||||| |||||||||| ||| | || ||||| ||
Sbjct 1047188 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCG--GGGGATGCCTTCCTTATC 1047131
Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356
||||| ||| | || | || | || | | || || |||| ||||||||
Sbjct 1047130 CTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTAGGCTCCACCTCCAAGGTGATGGT 1047071
Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||||||| || || ||||| ||||| | |||
Sbjct 1047070 CTTGCCGGTCAGGGTCTTCACGAAGATATACAT 1047038
>seq1
Length=21314971
Score = 93.3 bits (102), Expect = 3e-14
Identities = 155/219 (71%), Gaps = 4/219 (2%)
Strand=Plus/Minus
Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236
|||||||||||| | | |||||||| ||||||||||| || ||| | | | ||
Sbjct 4712577 CAGCACCAGGTGCAGGTTGGACTCTTTCTGGATGTTGTAGTCTGAGAGCGTGCAGCCATC 4712518
Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGT 34295
|||| ||| ||||| || || || || ||||||||||| | ||| || ||||||||
Sbjct 4712517 CTCCAGCTGTTTGCCGGCAAACATCAGACGCTGCTGGTCAGGTGGGATAGC-CTCCTTGT 4712459
Query 34296 CGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATG 34354
| || ||| ||||| | || | | | || | | ||||| || | ||||||
Sbjct 4712458 CTTGAAT-TTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTCAAGGGTGATG 4712400
Query 34355 GTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393
|| ||||| |||| || |||||||||||||| ||| ||
Sbjct 4712399 GTCTTGCCCATGAGGGTCTTCACAAAGATCTGTATCTCT 4712361
>seq247
Length=3354634
Score = 91.5 bits (100), Expect = 1e-13
Identities = 161/227 (71%), Gaps = 6/227 (3%)
Strand=Plus/Plus
Query 34170 GCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAG-CTGA 34228
|||| | |||||||||||| | || |||||||| |||||| |||| || || |||
Sbjct 2998230 GCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGCAGTCTGAGAGACTG- 2998288
Query 34229 CGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCT 34287
|| | || |||| ||| ||||| || || || || |||||||||| || ||| | |
Sbjct 2998289 TGGCCATCCTCCAGCTGTTTGCCAGCAAATATCAGATGCTGCTGGTCAGATGGG-ATACC 2998347
Query 34288 CTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCA 34346
||||||||| || ||| ||||| | || || | || | | || || || |
Sbjct 2998348 CTCCTTGTCTTGAAT-TTTGGCTTTGACATTCTTAATGGTGTCACTGGGCTCAACCTCAA 2998406
Query 34347 CCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393
|||||||| ||||| |||| || ||||||||||||||||| ||
Sbjct 2998407 GGGTGATGGTCTTGCCTTTGAGGGTCCTCACAAAGATCTGCATCTCT 2998453
>seq585
Length=1056956
Score = 89.7 bits (98), Expect = 3e-13
Identities = 149/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC-AGCTGACGGTCGTC 34236
|| || ||||||| ||| |||||||| ||||||||||| ||| || || || | ||
Sbjct 519124 AGGACAAGGTGTAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAAGGTG-CGCCCATC 519182
Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296
|||| |||||| || || || || | || ||||||||| || | || ||||||||
Sbjct 519183 TTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTC 519242
Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356
|||||| ||| | | || | || | | ||||| || | ||||||||
Sbjct 519243 CTAGATCTTTGCCTTGACGTTCTTAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 519302
Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| || || || || |||||||||||||||||
Sbjct 519303 CTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 519335
>seq573
Length=1150292
Score = 89.7 bits (98), Expect = 3e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || || |||| ||| || || | |||| || ||||| ||||||||||| |||
Sbjct 200470 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 200529
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
| ||| | || |||| |||||||| || || || || | ||||| || ||
Sbjct 200530 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 200589
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||| || ||||| ||||| || |||||| ||| | | ||| ||
Sbjct 200590 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 200649
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | |||||||| || || || || |||||||| || ||||||||
Sbjct 200650 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 200696
>seq132
Length=5349423
Score = 89.7 bits (98), Expect = 3e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || | ||| | ||| |||||||| | || |||||||| ||||||||||| ||
Sbjct 1755052 CCACCCCTCAGACACAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 1754993
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | || |||| |||||| | ||| || ||||||| || |||||| ||||
Sbjct 1754992 AGAGTGCGGCCATCTTCCAGCTGCTTTCGTGCAAAGATGAGCCTGTGGTGGTCGGCGGGG 1754933
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||| || ||||| ||| | || | | | || | | || ||
Sbjct 1754932 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCAGTGGTGTCACTGGGCTCCACC 1754873
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| |||||||| |||||| | || || |||| | |||||||||
Sbjct 1754872 TCCAGGGTGATGGTCTTGCCGATCAGGGTCTTCATGACGATCTGCAT 1754826
>seq3
Length=16812482
Score = 89.7 bits (98), Expect = 3e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || || |||||||| || || | |||| || ||||| ||||||||||| |||
Sbjct 14706844 CCACCACGAAGTCTCAGCACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 14706903
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
| ||| | || |||| |||||||| || || || || | ||||| || ||
Sbjct 14706904 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 14706963
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||| || ||||| ||||| || ||||| ||| | | ||| ||
Sbjct 14706964 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCTGAGGGTTCAACC 14707023
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | |||||||| || || || || |||||||| || ||||||||
Sbjct 14707024 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 14707070
>seq181
Length=4179193
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || || |||| ||| || || | |||| || ||||| ||||||||||| |||
Sbjct 2580467 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 2580526
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC--GACGG 34280
| ||| | || |||| |||||||| || || || || | ||||| || |||
Sbjct 2580527 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAC-- 2580584
Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340
| | | ||||| || ||||| ||||| || |||||| ||| | | ||| |
Sbjct 2580585 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAA 2580644
Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| || | |||||||| || || || || |||||||| || ||||||||
Sbjct 2580645 CCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 2580693
>seq170
Length=4466143
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
||| || || || | || |||||||| | || ||||| || ||||||||||| ||
Sbjct 3883228 TCCCCCTCGGAGACGGAGGACCAGGTGAAGGGTGGACTCTTTTTGGATGTTGTAGTCAGA 3883287
Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
||| || | || |||| |||||| || || || || | || ||||||||| ||
Sbjct 3883288 CAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGG 3883347
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341
| || |||||||| |||||| ||| | | | || | || | | || ||
Sbjct 3883348 GATGCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCAC 3883407
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | |||||||| |||||||| || || ||||| |||||||||||
Sbjct 3883408 CTCGAGGGTGATGGTCTTGCCGGTCAGTGTCTTCACGAAGATCTGCAT 3883455
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323043823679360
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