Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq526 269 2e-67 seq630 232 6e-56 seq867 141 9e-29 seq494 105 6e-18 seq57 102 8e-17 seq2 102 8e-17 >seq526 Length=1402496 Score = 269 bits (298), Expect = 2e-67 Identities = 541/795 (68%), Gaps = 18/795 (2%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||| |||||| | | | | ||| ||| ||| || | ||||||| ||| ||| Sbjct 113332 TTTAGAAATCAGCACCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCCATCC 113391 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 | ||||| || | |||||||| |||||||| || || |||||||| | ||||||||| | Sbjct 113392 TCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCT 113451 Query 16005 CCATAAAATCAAAAGGATT-----TTTTGAACAATAGTATTTATCGCATCCCAATTCCAA 16059 ||||||| ||||| ||||| || |||| || | | | | |||| ||||| Sbjct 113452 CCATAAAGTCAAATGGATTCTCTATTCTGAA-AACCTTGCTAA----AACCCAGTTCCAG 113506 Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119 || ||| || |||||||| || || || || ||||||| | || ||||| || || Sbjct 113507 CATG--TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAAT 113564 Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179 | | ||||| | || || || | ||| | || |||||| ||| || | || | Sbjct 113565 GAGCTCCACAGGCAAGGCCTCAGTAAGAAACTCTTGTTCTATCCGAACAGCATTGATAGT 113624 Query 16180 TATATCTCTTACTACACTATT-TAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAG 16238 ||| ||||||||| | || | | | || || || || |||||| ||||| | |||| Sbjct 113625 TATTTCTCTTACT-CTCTCCTCTGATGGTTTGTGTACTAGGTGTTTGAACATCAGGCAAG 113683 Query 16239 CAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTG 16298 |||||| | || || || || || || || | | || | |||||||| || || | Sbjct 113684 CAAAATGTGAGTGTAAACCCTCATCTCTGCTAAAAAGGTCATGAGAAAATGTGAGGCCAG 113743 Query 16299 GCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATAC 16358 |||| ||||||| ||| || | ||| ||||| | ||||| |||||||||||| | || | Sbjct 113744 GCATCAGTCCTCATTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGTAGATGC 113803 Query 16359 CTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TCTAtttttactttctat 16416 |||| ||||| ||||| || || | || ||||| || || || ||| | | | || Sbjct 113804 CTTCCACTGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCTCTTTGTCC--CCAAT 113861 Query 16417 ccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAA 16476 ||| ||||||| ||| || | || ||||| ||| | || || ||||| || Sbjct 113862 CCAGCGCAAGGCCCAATCTGCCTTCTTGTTGACACAAGGCATCGTTTCAATGGCATTGAA 113921 Query 16477 TAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTC 16536 | | | | |||| ||| |||| || ||||| || || || | || ||||||||| Sbjct 113922 GAGAAATTCCCTTTCATTGGGATCTTTTATGTAAGTGTCGATAAGGAGACCATACATTTC 113981 Query 16537 TGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTG 16596 ||||| || || ||||| || || || || ||||| || || | |||| | || || Sbjct 113982 AGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGCCTTCTGTAATCTG 114041 Query 16597 TACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAA 16656 | ||| | ||| | || | |||||||| || ||||| ||||| || ||||||| Sbjct 114042 AAGTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAG 114101 Query 16657 AAACGCAAGTATGTG 16671 || || || | ||| Sbjct 114102 GAAAGCCAGAACGTG 114116 >seq630 Length=879232 Score = 232 bits (256), Expect = 6e-56 Identities = 528/786 (67%), Gaps = 20/786 (3%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTA-GAGAAAACACATTATCTTTTTTATTTGACATAACTGACATT 15943 |||| || ||| ||| | || |||| | ||| ||| | | |||||| ||| ||| Sbjct 417478 TTTAGAAGTCAGCATCCAAGATAAAAGA-ATTCTCTGTGGGACTTGACACCACTCCCATC 417536 Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 | | || |||| |||||||| |||||||| || | |||||||| | || |||||| Sbjct 417537 CTCTAATGCTCACCTACTCTCTTCTCAAAGAAGTTAATCTTTCCTTCCAGTGGAATATTC 417596 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC---ATCCCAATTCCAAC 16060 |||||||| ||||| ||||| | | || | | | | || | |||| ||||| | Sbjct 417597 TCCATAAAGTCAAATGGATTCTCT--ACTCT-GAAAACCTTGCTAAAACCCAGTTCCAGC 417653 Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATT 16120 | | ||| || |||||||| || || || || ||||||| | || ||||| || || Sbjct 417654 ATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATG 417713 Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180 | || ||||| | || || | || | | |||||| ||| || | || ||| Sbjct 417714 AGCTTCACAGGCAAGATCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCATTGATAATT 417773 Query 16181 ATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCA 16240 || |||||| || | | | | || || || || ||||| ||||| | |||||| Sbjct 417774 ATTTCTCTTTCTCCCGGCTCTGATGGTTTGTGTACTAGGTGTTGGAACATCAGGCAAGCA 417833 Query 16241 AAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGC 16300 |||||||| || || || || || || || | | || || |||||||| || || ||| Sbjct 417834 AAATCACAGTGTAAACCCTCATCTCTGCTAAAAAGTTCATTAGAAAATGTGAGGCCAGGC 417893 Query 16301 ATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCT 16360 || ||||||||||| |||| ||| ||||| | || || |||||||||||||| | ||| Sbjct 417894 ATCAGTCCTCGTTTCTTAAGCCAGAATATGGAAGCTAAAGAACCAGAAAAGAAGACGCCT 417953 Query 16361 TCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TCTAtttttactttctatcc 16418 || ||||| ||||| ||| | ||||| || || || ||| | | | |||| Sbjct 417954 TCCACTGCAGCAAAGGCA-------GTTCACCATAGGTAGCCTCTTTGTCC--CCAATCC 418004 Query 16419 attttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATA 16478 | |||| | ||| || | || ||||| ||| | || || ||||| || | Sbjct 418005 AGCGCAAGGCCCGGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGA 418064 Query 16479 AATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTG 16538 | | | |||| || |||| ||||| || || | || | |||||||||||| | Sbjct 418065 GAAATTCCCTTTCGCTGGGATCTTTTATATACGTGTCAGTAAGGAGACTATACATTTCAG 418124 Query 16539 AATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTA 16598 |||| || || ||||| | || || || ||||| || || | || || | || || | Sbjct 418125 AATGTATGTTGTCCATGCCAATTTGGAATCCATAGAAACAGCGGGCCTCTGTAATCTGAA 418184 Query 16599 CTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAA-A 16657 |||| | ||| | || | |||||||| || ||||| || || || |||||||| | Sbjct 418185 CTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCGTCACTTGCTGCAAAGA 418244 Query 16658 AACGCA 16663 ||| || Sbjct 418245 AACTCA 418250 >seq867 Length=266704 Score = 141 bits (156), Expect = 9e-29 Identities = 261/377 (69%), Gaps = 8/377 (2%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||| || ||| ||| | | ||| ||| ||| || | ||||||| ||| ||| Sbjct 180931 TTTAGAAGTCAGCATCCAAGGTAAAATAATTCTCTGTTGGACTTGACATCACTCCCATCC 180872 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 | ||||| |||| ||||||||||||||||| || || |||||||| | ||||||||| | Sbjct 180871 TCTGATACTCACCTACTCTCTTTTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCT 180812 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC---ATCCCAATTCCAACA 16061 ||||||| ||||| ||||| | | || | | | | || | ||| |||||| || Sbjct 180811 CCATAAAGTCAAATGGATTCTCT--ACTCT-GAAAACCTTGCTAAAACCCGATTCCAGCA 180755 Query 16062 ATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTA 16121 | |||||| |||||||| || || || || ||||||| | || |||||||| || | Sbjct 180754 TAAGTCTATCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATTCCGATGA 180695 Query 16122 ATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTA 16181 || ||||| || || || | || | | |||||| ||| || | || |||| Sbjct 180694 GCTTCACAGGCGAGGCCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCATTGATAATTA 180635 Query 16182 TATCTCTTACTACACT-ATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCA 16240 | ||||||||| | || | | | || || || || ||||| |||| | ||| || Sbjct 180634 TTTCTCTTACT-CTCTCCTCTGATGGTTTGTGTACTAGATGTTTGAACAACAGGCAAACA 180576 Query 16241 AAATCACAATGCAATCC 16257 |||||||| || || || Sbjct 180575 AAATCACAGTGTAAACC 180559 >seq494 Length=1524325 Score = 105 bits (116), Expect = 6e-18 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||| || ||| ||| | || ||| ||||||| ||||| ||||||| |||| ||| | Sbjct 779252 TTTAGAAGTCAGCATCCAAAGTAAAAGAATTATCTATTTTACTTGACATCACTGCCATCT 779311 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 |||||||||||| |||||||| |||||||| || | |||||||| | |||||| || | Sbjct 779312 TTTGATATTCACCTACTCTCTTCTCAAAGAACTTAATCTTTCCTTCCAGTGAAATGTTCT 779371 Query 16005 CCA 16007 ||| Sbjct 779372 CCA 779374 >seq57 Length=8566406 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | | || || || ||| | | | || |||||||| | Sbjct 1408686 TTTAAAAATCTGCATCCAAGGTGAAGACGTTGTCTGTGGTTTCTGCCATAACTGCAAAAC 1408745 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || |||| || |||||||||||||||||||||||||| ||||| |||| Sbjct 1408746 GCTGATACTCTGAGACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTT 1408805 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||||||||||| || Sbjct 1408806 CCATAAAATCAAAAGGATTTTCTG 1408829 >seq2 Length=18007423 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || |||||||| || || ||||| ||||||||||| || Sbjct 1941487 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 1941428 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || ||||| ||||| ||||| || Sbjct 1941427 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCAAAGGCT 1941368 Query 16379 ACCAATCGCTCACC 16392 || | || ||||| Sbjct 1941367 ACGACACGTTCACC 1941354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462470628301600