Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq75 1422 0.0 seq151 147 2e-30 seq465 95.1 8e-15 seq44 86.0 4e-12 >seq75 Length=7679811 Score = 1422 bits (1576), Expect = 0.0 Identities = 1254/1553 (81%), Gaps = 35/1553 (2%) Strand=Plus/Plus Query 107224 GATTAGTTTGTAATTAAAGGCATTTTGTTCTGTCCAAGGATC---TCCTCCTCCACCTTG 107280 |||| |||||||| | ||||||||||||||||||||| ||| || || ||| |||| Sbjct 6831209 GATTGGTTTGTAACTGGAGGCATTTTGTTCTGTCCAAGAATCCTGTCGTCTTCCTCCTTC 6831268 Query 107281 CCTGTGCCCAAACTCT-CCTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAG 107339 ||||||| || ||| |||| |||||||| | ||| ||||| | |||| ||||| Sbjct 6831269 CCTGTGCTGAATCTCCACCTG-TCTCCCATTCTGTGACGATGGTTCAATGGA-GAAGA-- 6831324 Query 107340 CTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCT 107399 || ||| || |||| | ||||||| |||||||| || |||||||||||| |||| || Sbjct 6831325 CTCTGCTGGCAACATTACTTGTGGGCTCTGGGCTGTTACATGCTGCTGGCCATTGTGGCT 6831384 Query 107400 CTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGAC 107459 |||| |||||| |||||||| || ||||| || ||||| ||||||||||||||| Sbjct 6831385 CTGAAACTTTCTCTCAGGTTGAAGTGTGACTCTGACCACTTGGGTCTGGAGTCCAGGGAA 6831444 Query 107460 TTCCAGAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGA 107519 || || | | | ||||| || | || ||||||||| |||||||||||||||||| || Sbjct 6831445 TTTCAAAACCGGTACTGTCGGAATATCTTGTACAATTCCCTGAAGCTGCCAGCAAACAGG 6831504 Query 107520 TCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTA 107579 || ||| ||||||| ||| | || ||||| ||||| ||||| ||| | ||||| | || Sbjct 6831505 TCTATCGACTGTTCAGGGGTTACCCGAGGAGACCAAGAAGCGGTGTTGCAGGCTATTCTG 6831564 Query 107580 GACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATA 107639 |||||||| || ||||| ||||| |||| |||| | |||| | |||||| | Sbjct 6831565 AGTAACCTGGAGGTCAAGAAGAAGCGAGAGCCTTTCACAGACACCCACTACCTCTCGCTC 6831624 Query 107640 ACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAA 107699 |||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||| Sbjct 6831625 ACCAGAGACTGTGAGCGCTTTAAGGCTGAAAGGAAGTTCATACAGTTCCCACTGAGCAAA 6831684 Query 107700 GAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTT 107759 |||||| | || ||||| ||||| ||||| |||||| | ||||||||||||||||||||| Sbjct 6831685 GAAGAGGTGGAGTTCCCTATTGCATACTCCATGGTGATTCATGAGAAGATTGAAAACTTT 6831744 Query 107760 GAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTG 107819 ||| |||| |||||||| |||||||||||||||||| ||||||| |||||||||||| | Sbjct 6831745 GAAAGGCTCCTGCGAGCGGTGTATGCCCCTCAGAACGTATACTGCATCCACGTGGATGAG 6831804 Query 107820 AAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTC 107879 ||||||||||| ||||||||| |||| ||||| || |||| || |||||||| || ||| Sbjct 6831805 AAGTCCCCAGAAACTTTCAAAAAGGCAGTCAAAGCAATTACCTCGTGCTTCCCAAACGTC 6831864 Query 107880 TTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGAC 107939 ||||| ||||||||| | || | |||||||||||||||||||||||| |||||||||||| Sbjct 6831865 TTCATAGCCAGTAAGCTAGTTCGGGTGGTTTATGCCTCCTGGTCCAGGGTGCAAGCTGAC 6831924 Query 107940 CTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACA 107999 || ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 6831925 CTCAACTGCATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAATACTTCCTGAATACA 6831984 Query 108000 TGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTG 108059 || ||||| ||||| || |||||| |||||| |||||||||| ||| |||||||||||| Sbjct 6831985 TGTGGGACGGACTTTCCTCTAAAGAGCAATGCAGAGATGGTCCAGGCTCTCAAGATGTTG 6832044 Query 108060 AAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAA 108119 || || | ||| ||||||||||| ||||||||| |||||| |||| |||| ||||||||| Sbjct 6832045 AATGGGAGGAATAGTATGGAGTCAGAGGTACCTACTGAGTTCAAAGAAAACCGCTGGAAA 6832104 Query 108120 TACCGCTATGAG---GTGACAGACACACTGTAC-CCT-ACCAGCAAGATGAAGGACCCTC 108174 || | || |||| |||| |||| || | ||| ||| ||||| |||| | |||| |||| Sbjct 6832105 TATCACTTTGAGGTAGTGAGAGAC-CAGT-TACACCTAACCAGAAAGAAGGAGGATCCTC 6832162 Query 108175 CCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTG 108234 ||||| |||| || | ||||||||||||||||| ||| ||||||| |||||||| |||| Sbjct 6832163 CCCCTTTTAATGTAACTATGTTCACAGGGAATGCATATATTGTGGCTTCTCGAGCTTTTG 6832222 Query 108235 TCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCT 108294 |||||||||| || | || |||||||||||| |||| |||||||||| |||||||||| Sbjct 6832223 TCCAACATGTTTTGAAGAATCCTAAATCCCAACAACTGATTGAATGGGTAAAAGACACCT 6832282 Query 108295 ATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTG 108354 | ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 6832283 ACAGCCCTGACGAACACCTCTGGGCCACCCTTCAGCGTGCATGGTGGATGCCTGGCTCTG 6832342 Query 108355 TTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGT 108414 |||| ||||| ||||||| ||||||||||||||||| | || |||||||| ||||||| Sbjct 6832343 TTCCCCACCACCGCAAGTATGACATCTCAGACATGACTTCTATTGCCAGGCTGGTCAAGT 6832402 Query 108415 GGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCC 108474 ||||| || |||||||| |||| | ||| || ||||||| || ||||||||||||| Sbjct 6832403 GGCAGGGTCATGAGGGAGACATCAGTAAGGGTGCCCCTTATGGCCCTTGCTCTGGAATCC 6832462 Query 108475 ATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATC 108534 | | | |||| ||||| | || ||||| |||||| || | ||||| || || |||| || Sbjct 6832463 ACCAGCGGGCTATCTGTGTGTATGGGGCTGGGGACGTGCATTGGATGCTTCAAAACCCTC 6832522 Query 108535 ACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAG 108594 |||| ||||| |||||||||||||| | ||| ||||| | | || |||||||| |||| Sbjct 6832523 ACCTGTTGGCCAACAAGTTTGACCCAAAGGTAGATGACAGTGCTCTTCAGTGCTTGGAAG 6832582 Query 108595 AGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAG-----CT------GCACT 108643 ||||||||||| | |||||| |||||||||||| |||||||| || ||||| Sbjct 6832583 AGTACCTACGTTACAAGGCCTTCTATGGGACTGCACTTTGAGACGCACTATGAGAGCACT 6832642 Query 108644 G--------TGGGCCAGGGACTGTGCCAACATGCCCAGGGCGTACTGGTACTGTGTGGGG 108695 | |||| || | |||| ||||||| ||| | | |||| || ||| ||| Sbjct 6832643 GCTACCTGTGGGGCAAGAGCATGTGTGAACATGCTCAGAACTTGCTGGGACAGTG-CGGG 6832701 Query 108696 TGGGGGACGAGGGCTGTGGAATCCATGGCATCCCCCAGGGTCAGAGGGCTGCT 108748 |||| | | |||||| | ||||| |||||||||| ||| | || |||||||| Sbjct 6832702 TGGGAGGCCAGGGCTTTTCAATCCGTGGCATCCCCTAGGATAAGGGGGCTGCT 6832754 >seq151 Length=5769222 Score = 147 bits (162), Expect = 2e-30 Identities = 572/885 (65%), Gaps = 27/885 (3%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| ||| || || || || || || || ||||| ||| | ||| Sbjct 2473426 CCCCTTAGTAAAGAAGAGGCAGAGTTTCCAATAGCGTATTCTATCGTGGTTCATCACAAG 2473485 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 || |||| |||| |||| ||| | ||| | ||| |||||||| | || ||| | Sbjct 2473486 ATCGAAATGCTTGACAGGCTACTGAGGGCCATCTATATGCCTCAGAATTTCTATTGTATT 2473545 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAA---AGAGGCGGTCAAGGCCATTATTTCC 107864 || ||||| || ||| ||| || | | || || || | || |||| ||| Sbjct 2473546 CATGTGGACAAAAAATCC---GAGGATTCCTATTTAGCTGCAGTGATGGGCATTGCATCC 2473602 Query 107865 TGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCC 107924 || ||| ||||||||| ||||||| |||| ||||||||||| || ||| | Sbjct 2473603 TGTTTCAGTAATGTCTTCGTGGCCAGCCGATTGGAGAGTGTGGTTTATGCATCGTGGAGC 2473662 Query 107925 AGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGA 107982 | || || |||||||| ||||| ||| | ||| | || | | | || || | |||| Sbjct 2473663 CGGGTTCAGGCTGACCTCAACTGCATGAAGGACCT-CTAC-GCAATGAGGGCGAACTGGA 2473720 Query 107983 AGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCC 108042 ||||||| | ||| || || | || || || || || ||||| || || ||| Sbjct 2473721 AGTACTTGATAAATCTTTGTGGTATGGATTTTCCTATTAAAACCAACCTAGAAATTGTCA 2473780 Query 108043 TGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGA---GGTACCTTCTGAGT 108099 | |||||| |||||| ||| | |||| |||| | || | | || || | Sbjct 2473781 GGAAGCTCAAGTTGTTGATGGGAGAAAACAACCTGGAAACGGAGAGGATGCCATCCAA-- 2473838 Query 108100 CCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCA 108159 ||| || | | |||||| | || |||||||| | | | || | | || Sbjct 2473839 -TAAAGAAGAAAGGTGGAAAAAGCGGTATGAGGTCATTAATGGAAAGTTGACAAACACAG 2473897 Query 108160 AGA-TG----AAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTT 108214 || || || | | || ||| || |||||| || | || | |||||| || Sbjct 2473898 GGACTGTCAAAATGCTTCCTCCGCTGGCAA--CACCCATTTTTTCTGGCAGTGCCTACTT 2473955 Query 108215 TGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGT 108274 ||||| | | | | | ||| |||| || | || ||| ||||| | | Sbjct 2473956 TGTGGTCAGTAGGGAGTATGTGGGGTATGTACTACAGAATGAAAAAATCCAAAAGTTTAT 2474015 Query 108275 TGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGC 108334 || |||| ||||||| |||||||| || || | |||||||| ||| | ||| | | Sbjct 2474016 GGAGTGGGCACAAGACACATATAGCCCTGATGAGTATCTCTGGGCTACCATCCAGAG-GA 2474074 Query 108335 TCCGTGGA-TGCCTGGCTCTGTTCCTAGCCA-CCCCAAGTATCACATCTCAGACATGACT 108392 | | || | | || ||||| | || |||| || ||||| | | || |||||| Sbjct 2474075 TTCCTGAAGTCCCGGGCTCACTCTCT-GCCAGCCATAAGTACGATTTGTCTGACATGCAG 2474133 Query 108393 GCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCT 108452 || || |||||| | ||||||||||||||| ||||| ||||| || ||| || || Sbjct 2474134 GCGATTGCCAGGTTTGTCAAGTGGCAGTACTTTGAGGGTGATGTTTCCAAGGGTGCTCCC 2474193 Query 108453 TATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTG 108512 || |||||||| || | || | | | | ||||||| ||| || || ||| || Sbjct 2474194 TACCCACCCTGCGACGGGGTGCACGTGCGCTCGGTGTGCATTTTCGGAGCTGGTGACTTG 2474253 Query 108513 TACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||||||| || | || |||||| | || || || ||||||||| Sbjct 2474254 AACTGGATGCTGCGCAAGCATCACTTGTTTGCCAATAAGTTTGAC 2474298 >seq465 Length=1645510 Score = 95.1 bits (104), Expect = 8e-15 Identities = 262/396 (66%), Gaps = 8/396 (2%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| ||| || || || || || || || ||||| ||| | ||| Sbjct 1458845 CCCCTTAGTAAAGAAGAGGCAGAGTTTCCAATAGCATATTCTATCGTGGTTCATCACAAG 1458904 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 || |||| |||| |||| ||| | ||| | ||| |||||||| | || || || Sbjct 1458905 ATCGAAATGCTTGATGGGCTACTGAGGGCCATTTATATGCCTCAGAATTTCTATTGCGTT 1458964 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || | ||| || |||| || | | || || || | || |||| |||||| Sbjct 1458965 CATGCGGACAAAAAATCCCAGGATTCCTATTTAGCTGCAGTGATGGGCATTGCTTCCTGT 1459024 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| |||||||| ||||||| | || ||||||||||| || || | | Sbjct 1459025 TTCAGTAATGTCTTTGTGGCCAGCCCATCGGAGAGTGTGGTTTATGCGTCGGGGAGCTGG 1459084 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 || || ||||| || ||||| ||| | ||||| || | | | || || | ||||||| Sbjct 1459085 GTTCAGGCTGAACTCAACTGCATGAAGGACTT-CTGTACA-ATGAGGGCGAACTGGAAGT 1459142 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAG--ATGGTCCT 108043 |||| | ||| || || | || || || || || ||||| || || | ||| Sbjct 1459143 ACTTGATAAATCTTTGTGGTATGGATTTTCCTATTAAAACCAA--CCTAGGAAATGTCAG 1459200 Query 108044 GGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGA 108079 | |||||| |||||| ||| | ||||| |||| Sbjct 1459201 GAAGCTCAAGTTGTTGATGGGAGAAAACAGCCTGGA 1459236 >seq44 Length=9771143 Score = 86.0 bits (94), Expect = 4e-12 Identities = 223/334 (67%), Gaps = 6/334 (2%) Strand=Plus/Minus Query 107698 AAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACT 107757 |||||||| | | ||||| | ||||| ||||| ||||| || | |||| | || Sbjct 4928211 AAGAAGAGGTTGCATTCCCTTTGGCCTATGTCATGGTCATCCATAAGGACTTTGATACCT 4928152 Query 107758 TTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATG 107817 ||||| |||| | | || | ||| || ||||| | |||||||| |||||||||| Sbjct 4928151 TTGAAAGGCTCTTTAGGGCTATCTATATGCCCCAGAATGTCTACTGTGTTCACGTGGATG 4928092 Query 107818 TGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCT-GCTTCCCCAAT 107876 ||| |||||| ||||| || | || | ||| ||| | | |||||| ||| Sbjct 4928091 AGAAAGCCCCAGCTGAGTTCAAGGAATCTGTGA-GGCAGTTACTGAGTTGCTTCCAAAAT 4928033 Query 107877 GTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCT 107936 | ||||| || ||| | | ||||||||||| ||||| | || ||| Sbjct 4928032 GCTTTCATTGCTTCAAAGACAGAGTCTGTGGTTTATGCAGGAATTTCCAGGCTCCAGGCT 4927973 Query 107937 GACCTGAACTGTATGGAAGA-CTTGCTCCAGAGCTCA-GTGCCATGGAAGTACTTACTGA 107994 |||||||||||| || |||| ||| | || || | | || ||||||||| | | | Sbjct 4927972 GACCTGAACTGTCTGAAAGATCTT--TTCAACTCTGAGGCTCCCTGGAAGTACGTCATCA 4927915 Query 107995 ATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 | || || || |||||||||| | || ||||| Sbjct 4927914 ACACCTGTGGACAAGACTTCCCCCTGAAAACCAA 4927881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348238426171944