Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq75 1422 0.0
seq151 147 2e-30
seq465 95.1 8e-15
seq44 86.0 4e-12
>seq75
Length=7679811
Score = 1422 bits (1576), Expect = 0.0
Identities = 1254/1553 (81%), Gaps = 35/1553 (2%)
Strand=Plus/Plus
Query 107224 GATTAGTTTGTAATTAAAGGCATTTTGTTCTGTCCAAGGATC---TCCTCCTCCACCTTG 107280
|||| |||||||| | ||||||||||||||||||||| ||| || || ||| ||||
Sbjct 6831209 GATTGGTTTGTAACTGGAGGCATTTTGTTCTGTCCAAGAATCCTGTCGTCTTCCTCCTTC 6831268
Query 107281 CCTGTGCCCAAACTCT-CCTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAG 107339
||||||| || ||| |||| |||||||| | ||| ||||| | |||| |||||
Sbjct 6831269 CCTGTGCTGAATCTCCACCTG-TCTCCCATTCTGTGACGATGGTTCAATGGA-GAAGA-- 6831324
Query 107340 CTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCT 107399
|| ||| || |||| | ||||||| |||||||| || |||||||||||| |||| ||
Sbjct 6831325 CTCTGCTGGCAACATTACTTGTGGGCTCTGGGCTGTTACATGCTGCTGGCCATTGTGGCT 6831384
Query 107400 CTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGAC 107459
|||| |||||| |||||||| || ||||| || ||||| |||||||||||||||
Sbjct 6831385 CTGAAACTTTCTCTCAGGTTGAAGTGTGACTCTGACCACTTGGGTCTGGAGTCCAGGGAA 6831444
Query 107460 TTCCAGAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGA 107519
|| || | | | ||||| || | || ||||||||| |||||||||||||||||| ||
Sbjct 6831445 TTTCAAAACCGGTACTGTCGGAATATCTTGTACAATTCCCTGAAGCTGCCAGCAAACAGG 6831504
Query 107520 TCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTA 107579
|| ||| ||||||| ||| | || ||||| ||||| ||||| ||| | ||||| | ||
Sbjct 6831505 TCTATCGACTGTTCAGGGGTTACCCGAGGAGACCAAGAAGCGGTGTTGCAGGCTATTCTG 6831564
Query 107580 GACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATA 107639
|||||||| || ||||| ||||| |||| |||| | |||| | |||||| |
Sbjct 6831565 AGTAACCTGGAGGTCAAGAAGAAGCGAGAGCCTTTCACAGACACCCACTACCTCTCGCTC 6831624
Query 107640 ACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAA 107699
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||
Sbjct 6831625 ACCAGAGACTGTGAGCGCTTTAAGGCTGAAAGGAAGTTCATACAGTTCCCACTGAGCAAA 6831684
Query 107700 GAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTT 107759
|||||| | || ||||| ||||| ||||| |||||| | |||||||||||||||||||||
Sbjct 6831685 GAAGAGGTGGAGTTCCCTATTGCATACTCCATGGTGATTCATGAGAAGATTGAAAACTTT 6831744
Query 107760 GAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTG 107819
||| |||| |||||||| |||||||||||||||||| ||||||| |||||||||||| |
Sbjct 6831745 GAAAGGCTCCTGCGAGCGGTGTATGCCCCTCAGAACGTATACTGCATCCACGTGGATGAG 6831804
Query 107820 AAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTC 107879
||||||||||| ||||||||| |||| ||||| || |||| || |||||||| || |||
Sbjct 6831805 AAGTCCCCAGAAACTTTCAAAAAGGCAGTCAAAGCAATTACCTCGTGCTTCCCAAACGTC 6831864
Query 107880 TTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGAC 107939
||||| ||||||||| | || | |||||||||||||||||||||||| ||||||||||||
Sbjct 6831865 TTCATAGCCAGTAAGCTAGTTCGGGTGGTTTATGCCTCCTGGTCCAGGGTGCAAGCTGAC 6831924
Query 107940 CTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACA 107999
|| ||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 6831925 CTCAACTGCATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAATACTTCCTGAATACA 6831984
Query 108000 TGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTG 108059
|| ||||| ||||| || |||||| |||||| |||||||||| ||| ||||||||||||
Sbjct 6831985 TGTGGGACGGACTTTCCTCTAAAGAGCAATGCAGAGATGGTCCAGGCTCTCAAGATGTTG 6832044
Query 108060 AAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAA 108119
|| || | ||| ||||||||||| ||||||||| |||||| |||| |||| |||||||||
Sbjct 6832045 AATGGGAGGAATAGTATGGAGTCAGAGGTACCTACTGAGTTCAAAGAAAACCGCTGGAAA 6832104
Query 108120 TACCGCTATGAG---GTGACAGACACACTGTAC-CCT-ACCAGCAAGATGAAGGACCCTC 108174
|| | || |||| |||| |||| || | ||| ||| ||||| |||| | |||| ||||
Sbjct 6832105 TATCACTTTGAGGTAGTGAGAGAC-CAGT-TACACCTAACCAGAAAGAAGGAGGATCCTC 6832162
Query 108175 CCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTG 108234
||||| |||| || | ||||||||||||||||| ||| ||||||| |||||||| ||||
Sbjct 6832163 CCCCTTTTAATGTAACTATGTTCACAGGGAATGCATATATTGTGGCTTCTCGAGCTTTTG 6832222
Query 108235 TCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCT 108294
|||||||||| || | || |||||||||||| |||| |||||||||| ||||||||||
Sbjct 6832223 TCCAACATGTTTTGAAGAATCCTAAATCCCAACAACTGATTGAATGGGTAAAAGACACCT 6832282
Query 108295 ATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTG 108354
| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 6832283 ACAGCCCTGACGAACACCTCTGGGCCACCCTTCAGCGTGCATGGTGGATGCCTGGCTCTG 6832342
Query 108355 TTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGT 108414
|||| ||||| ||||||| ||||||||||||||||| | || |||||||| |||||||
Sbjct 6832343 TTCCCCACCACCGCAAGTATGACATCTCAGACATGACTTCTATTGCCAGGCTGGTCAAGT 6832402
Query 108415 GGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCC 108474
||||| || |||||||| |||| | ||| || ||||||| || |||||||||||||
Sbjct 6832403 GGCAGGGTCATGAGGGAGACATCAGTAAGGGTGCCCCTTATGGCCCTTGCTCTGGAATCC 6832462
Query 108475 ATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATC 108534
| | | |||| ||||| | || ||||| |||||| || | ||||| || || |||| ||
Sbjct 6832463 ACCAGCGGGCTATCTGTGTGTATGGGGCTGGGGACGTGCATTGGATGCTTCAAAACCCTC 6832522
Query 108535 ACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAG 108594
|||| ||||| |||||||||||||| | ||| ||||| | | || |||||||| ||||
Sbjct 6832523 ACCTGTTGGCCAACAAGTTTGACCCAAAGGTAGATGACAGTGCTCTTCAGTGCTTGGAAG 6832582
Query 108595 AGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAG-----CT------GCACT 108643
||||||||||| | |||||| |||||||||||| |||||||| || |||||
Sbjct 6832583 AGTACCTACGTTACAAGGCCTTCTATGGGACTGCACTTTGAGACGCACTATGAGAGCACT 6832642
Query 108644 G--------TGGGCCAGGGACTGTGCCAACATGCCCAGGGCGTACTGGTACTGTGTGGGG 108695
| |||| || | |||| ||||||| ||| | | |||| || ||| |||
Sbjct 6832643 GCTACCTGTGGGGCAAGAGCATGTGTGAACATGCTCAGAACTTGCTGGGACAGTG-CGGG 6832701
Query 108696 TGGGGGACGAGGGCTGTGGAATCCATGGCATCCCCCAGGGTCAGAGGGCTGCT 108748
|||| | | |||||| | ||||| |||||||||| ||| | || ||||||||
Sbjct 6832702 TGGGAGGCCAGGGCTTTTCAATCCGTGGCATCCCCTAGGATAAGGGGGCTGCT 6832754
>seq151
Length=5769222
Score = 147 bits (162), Expect = 2e-30
Identities = 572/885 (65%), Gaps = 27/885 (3%)
Strand=Plus/Plus
Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747
|| || |||||||||||| ||| || || || || || || || ||||| ||| | |||
Sbjct 2473426 CCCCTTAGTAAAGAAGAGGCAGAGTTTCCAATAGCGTATTCTATCGTGGTTCATCACAAG 2473485
Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807
|| |||| |||| |||| ||| | ||| | ||| |||||||| | || ||| |
Sbjct 2473486 ATCGAAATGCTTGACAGGCTACTGAGGGCCATCTATATGCCTCAGAATTTCTATTGTATT 2473545
Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAA---AGAGGCGGTCAAGGCCATTATTTCC 107864
|| ||||| || ||| ||| || | | || || || | || |||| |||
Sbjct 2473546 CATGTGGACAAAAAATCC---GAGGATTCCTATTTAGCTGCAGTGATGGGCATTGCATCC 2473602
Query 107865 TGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCC 107924
|| ||| ||||||||| ||||||| |||| ||||||||||| || ||| |
Sbjct 2473603 TGTTTCAGTAATGTCTTCGTGGCCAGCCGATTGGAGAGTGTGGTTTATGCATCGTGGAGC 2473662
Query 107925 AGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGA 107982
| || || |||||||| ||||| ||| | ||| | || | | | || || | ||||
Sbjct 2473663 CGGGTTCAGGCTGACCTCAACTGCATGAAGGACCT-CTAC-GCAATGAGGGCGAACTGGA 2473720
Query 107983 AGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCC 108042
||||||| | ||| || || | || || || || || ||||| || || |||
Sbjct 2473721 AGTACTTGATAAATCTTTGTGGTATGGATTTTCCTATTAAAACCAACCTAGAAATTGTCA 2473780
Query 108043 TGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGA---GGTACCTTCTGAGT 108099
| |||||| |||||| ||| | |||| |||| | || | | || || |
Sbjct 2473781 GGAAGCTCAAGTTGTTGATGGGAGAAAACAACCTGGAAACGGAGAGGATGCCATCCAA-- 2473838
Query 108100 CCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCA 108159
||| || | | |||||| | || |||||||| | | | || | | ||
Sbjct 2473839 -TAAAGAAGAAAGGTGGAAAAAGCGGTATGAGGTCATTAATGGAAAGTTGACAAACACAG 2473897
Query 108160 AGA-TG----AAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTT 108214
|| || || | | || ||| || |||||| || | || | |||||| ||
Sbjct 2473898 GGACTGTCAAAATGCTTCCTCCGCTGGCAA--CACCCATTTTTTCTGGCAGTGCCTACTT 2473955
Query 108215 TGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGT 108274
||||| | | | | | ||| |||| || | || ||| ||||| | |
Sbjct 2473956 TGTGGTCAGTAGGGAGTATGTGGGGTATGTACTACAGAATGAAAAAATCCAAAAGTTTAT 2474015
Query 108275 TGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGC 108334
|| |||| ||||||| |||||||| || || | |||||||| ||| | ||| | |
Sbjct 2474016 GGAGTGGGCACAAGACACATATAGCCCTGATGAGTATCTCTGGGCTACCATCCAGAG-GA 2474074
Query 108335 TCCGTGGA-TGCCTGGCTCTGTTCCTAGCCA-CCCCAAGTATCACATCTCAGACATGACT 108392
| | || | | || ||||| | || |||| || ||||| | | || ||||||
Sbjct 2474075 TTCCTGAAGTCCCGGGCTCACTCTCT-GCCAGCCATAAGTACGATTTGTCTGACATGCAG 2474133
Query 108393 GCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCT 108452
|| || |||||| | ||||||||||||||| ||||| ||||| || ||| || ||
Sbjct 2474134 GCGATTGCCAGGTTTGTCAAGTGGCAGTACTTTGAGGGTGATGTTTCCAAGGGTGCTCCC 2474193
Query 108453 TATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTG 108512
|| |||||||| || | || | | | | ||||||| ||| || || ||| ||
Sbjct 2474194 TACCCACCCTGCGACGGGGTGCACGTGCGCTCGGTGTGCATTTTCGGAGCTGGTGACTTG 2474253
Query 108513 TACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557
||||||| || | || |||||| | || || || |||||||||
Sbjct 2474254 AACTGGATGCTGCGCAAGCATCACTTGTTTGCCAATAAGTTTGAC 2474298
>seq465
Length=1645510
Score = 95.1 bits (104), Expect = 8e-15
Identities = 262/396 (66%), Gaps = 8/396 (2%)
Strand=Plus/Plus
Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747
|| || |||||||||||| ||| || || || || || || || ||||| ||| | |||
Sbjct 1458845 CCCCTTAGTAAAGAAGAGGCAGAGTTTCCAATAGCATATTCTATCGTGGTTCATCACAAG 1458904
Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807
|| |||| |||| |||| ||| | ||| | ||| |||||||| | || || ||
Sbjct 1458905 ATCGAAATGCTTGATGGGCTACTGAGGGCCATTTATATGCCTCAGAATTTCTATTGCGTT 1458964
Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867
|| | ||| || |||| || | | || || || | || |||| ||||||
Sbjct 1458965 CATGCGGACAAAAAATCCCAGGATTCCTATTTAGCTGCAGTGATGGGCATTGCTTCCTGT 1459024
Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927
||| |||||||| ||||||| | || ||||||||||| || || | |
Sbjct 1459025 TTCAGTAATGTCTTTGTGGCCAGCCCATCGGAGAGTGTGGTTTATGCGTCGGGGAGCTGG 1459084
Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985
|| || ||||| || ||||| ||| | ||||| || | | | || || | |||||||
Sbjct 1459085 GTTCAGGCTGAACTCAACTGCATGAAGGACTT-CTGTACA-ATGAGGGCGAACTGGAAGT 1459142
Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAG--ATGGTCCT 108043
|||| | ||| || || | || || || || || ||||| || || | |||
Sbjct 1459143 ACTTGATAAATCTTTGTGGTATGGATTTTCCTATTAAAACCAA--CCTAGGAAATGTCAG 1459200
Query 108044 GGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGA 108079
| |||||| |||||| ||| | ||||| ||||
Sbjct 1459201 GAAGCTCAAGTTGTTGATGGGAGAAAACAGCCTGGA 1459236
>seq44
Length=9771143
Score = 86.0 bits (94), Expect = 4e-12
Identities = 223/334 (67%), Gaps = 6/334 (2%)
Strand=Plus/Minus
Query 107698 AAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACT 107757
|||||||| | | ||||| | ||||| ||||| ||||| || | |||| | ||
Sbjct 4928211 AAGAAGAGGTTGCATTCCCTTTGGCCTATGTCATGGTCATCCATAAGGACTTTGATACCT 4928152
Query 107758 TTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATG 107817
||||| |||| | | || | ||| || ||||| | |||||||| ||||||||||
Sbjct 4928151 TTGAAAGGCTCTTTAGGGCTATCTATATGCCCCAGAATGTCTACTGTGTTCACGTGGATG 4928092
Query 107818 TGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCT-GCTTCCCCAAT 107876
||| |||||| ||||| || | || | ||| ||| | | |||||| |||
Sbjct 4928091 AGAAAGCCCCAGCTGAGTTCAAGGAATCTGTGA-GGCAGTTACTGAGTTGCTTCCAAAAT 4928033
Query 107877 GTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCT 107936
| ||||| || ||| | | ||||||||||| ||||| | || |||
Sbjct 4928032 GCTTTCATTGCTTCAAAGACAGAGTCTGTGGTTTATGCAGGAATTTCCAGGCTCCAGGCT 4927973
Query 107937 GACCTGAACTGTATGGAAGA-CTTGCTCCAGAGCTCA-GTGCCATGGAAGTACTTACTGA 107994
|||||||||||| || |||| ||| | || || | | || ||||||||| | | |
Sbjct 4927972 GACCTGAACTGTCTGAAAGATCTT--TTCAACTCTGAGGCTCCCTGGAAGTACGTCATCA 4927915
Query 107995 ATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028
| || || || |||||||||| | || |||||
Sbjct 4927914 ACACCTGTGGACAAGACTTCCCCCTGAAAACCAA 4927881
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 348238426171944
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