Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq526 275 6e-69 seq630 250 2e-61 seq867 122 8e-23 seq2 114 1e-20 seq494 87.8 2e-12 >seq526 Length=1402496 Score = 275 bits (304), Expect = 6e-69 Identities = 550/809 (68%), Gaps = 6/809 (1%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914 || |||||| || | || | |||| ||| || | || | | || || || ||||| | Sbjct 113334 TAGAAATCAGCACCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 113392 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 113393 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 113452 Query 13975 CATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 14034 |||||| ||||||||||| | | || || || | |||| ||||| | | Sbjct 113453 CATAAAGTCAAATGGATTCTCTATTCTGAAAACCTTGCTAAAACCCAGTTCCAGCATG-- 113510 Query 14035 TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 14094 ||| || || | |||||||| ||||| ||||| | |||||||| || || || | Sbjct 113511 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTC 113570 Query 14095 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA- 14153 ||||| | | || | ||| |||| |||||| ||||| | | | | || Sbjct 113571 CACAGGCAAGGCCTCAGTAAGAAACTCTTGTTCTATCCGAACAGCATTGATAGTTATTTC 113630 Query 14154 TCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 14213 || || | | || | || || | | ||| ||||| || || | || ||||||| Sbjct 113631 TCTTACTC-TCTCCTCTGATGGTTTGTGTACTAGGTGTTTGAACATCAGGCAAGCAAAAT 113689 Query 14214 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 14273 | || | ||||||||||| |||| ||| || | |||||||| | || ||||||| Sbjct 113690 GTGAGTGTAAACCCTCATCTCTGCTAAAAAGGTCATGAGAAAATGTGAGGCCAGGCATCA 113749 Query 14274 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 14333 ||||| ||| || | ||| ||||| | || || || || |||||| | || || || | Sbjct 113750 GTCCTCATTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGTAGATGCCTTCCA 113809 Query 14334 CTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTC 14393 |||||||||| |||| | ||||| ||| | | || | ||||| | ||||| Sbjct 113810 CTGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCA 113869 Query 14394 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTT 14453 ||||| || | || || || | | || ||| |||||||| ||||| || | | || Sbjct 113870 AGGCCCAATCTGCCTTCTTGTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATT 113929 Query 14454 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14513 || | || || | | | ||||| || || ||||| | | |||||||||||| |||| Sbjct 113930 CCCTTTCATTGGGATCTTTTATGTAAGTGTCGATAAGGAGACCATACATTTCAGAATGTA 113989 Query 14514 TGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTG 14573 |||||||||| || || || || ||||| ||||| | |||||| || | ||| Sbjct 113990 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGCCTTCTGTAATCTGAAGTTCTT 114049 Query 14574 AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14633 | ||||| || |||| |||||||| ||||| |||||||| ||||||| || |||| Sbjct 114050 GGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAGGAAAGCCA 114109 Query 14634 ATATGTTTTTAATAAAGTATTGCTCTTCA 14662 | || ||||||||| ||| ||| Sbjct 114110 GAACGTGAGATATAAAGTATCTCTCCTCA 114138 >seq630 Length=879232 Score = 250 bits (276), Expect = 2e-61 Identities = 495/730 (68%), Gaps = 17/730 (2%) Strand=Plus/Plus Query 13904 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13963 || ||||| | | || |||| ||||| || |||||||||||| | || ||||||||| Sbjct 417528 ACTCCCATCCTCTAATGCTCACCTACTCTCTTCTCAAAGAAGTTAATCTTTCCTTCCAGT 417587 Query 13964 GATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGT 14023 | ||||| |||||||| ||||||||||| | | || || || | |||| ||| Sbjct 417588 GGAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGT 417647 Query 14024 TCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATA 14083 || | | | ||| || || | |||||||| ||||| ||||| | |||||||| Sbjct 417648 TCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATC 417707 Query 14084 CCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCG 14143 || || || || ||||| | || | || | || || | |||||| ||||| | | Sbjct 417708 CCAATGAGCTTCACAGGCAAGATCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCATTG 417767 Query 14144 TTTATAATAATCGTAATAATT-TCA----TTAGAAGGAGGATATTTTAGATGTTTAAAAA 14198 ||||| || | | || || | || || | | ||| |||| || | Sbjct 417768 ---ATAATTAT--TTCTCTTTCTCCCGGCTCTGATGGTTTGTGTACTAGGTGTTGGAACA 417822 Query 14199 TTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATG 14258 | | || ||||||||||| || | ||||||||||| |||| |||||| || ||||||| Sbjct 417823 TCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAAAAAGTTCATTAGAAAATG 417882 Query 14259 TTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAA 14318 | | || ||||||| ||||||||| || | ||| ||||| | ||| || || || |||| Sbjct 417883 TGAGGCCAGGCATCAGTCCTCGTTTCTTAAGCCAGAATATGGAAGCTAAAGAACCAGAAA 417942 Query 14319 AGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT 14378 |||| | || || ||||||||||| || |||| ||| | | || | ||||| Sbjct 417943 AGAAGACGCCTTCCACTGCAGCAAAGGC-------AGTTCACCATAGGTAGCCTCTTTGT 417995 Query 14379 TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14438 | ||||| |||| || | || || || | | || ||| |||||||| | Sbjct 417996 CCCCAATCCAGCGCAAGGCCCGGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGG 418055 Query 14439 CATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14498 |||| || | | |||| | || | | | | || || || ||| |||| | |||| Sbjct 418056 CATTGAAGAGAAATTCCCTTTCGCTGGGATCTTTTATATACGTGTCAGTAAGGAGACTAT 418115 Query 14499 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558 |||||||||| |||||||| ||||| | || || || ||||| ||||| | || |||| Sbjct 418116 ACATTTCAGAATGTATGTTGTCCATGCCAATTTGGAATCCATAGAAACAGCGGGCCTCTG 418175 Query 14559 ACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14618 || || ||| | ||||| || |||| |||||||| ||||| || ||||| | Sbjct 418176 TAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCGTCACTTG 418235 Query 14619 CTGCAAAAAA 14628 ||||||| || Sbjct 418236 CTGCAAAGAA 418245 >seq867 Length=266704 Score = 122 bits (134), Expect = 8e-23 Identities = 176/246 (72%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 180929 TAGAAGTCAGCATCCAAGGTAAAATAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 180871 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| |||| ||||| ||||||||||||||||| || ||||||||||| ||||| || Sbjct 180870 CTGATACTCACCTACTCTCTTTTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 180811 Query 13975 CATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 14034 |||||| ||||||||||| | | || || || | |||| ||| | | | Sbjct 180810 CATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCGATTCCAGCATAAG 180751 Query 14035 TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 14094 |||||| || | |||||||| ||||| ||||| | |||||||| || || || || Sbjct 180750 TCTATCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATTCCGATGAGCTT 180691 Query 14095 TACAGG 14100 ||||| Sbjct 180690 CACAGG 180685 >seq2 Length=18007423 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 1941489 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 1941430 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || || |||||||| || || || ||||||||||| | Sbjct 1941429 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCAAAGG 1941370 Query 14346 CTATTAATCGTTCTCC 14361 ||| | ||||| || Sbjct 1941369 CTACGACACGTTCACC 1941354 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 1943292 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 1943234 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 1943233 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 1943174 Query 13975 CATAAAATCAAATGGATT 13992 |||||| ||||||||||| Sbjct 1943173 CATAAAGTCAAATGGATT 1943156 Score = 91.5 bits (100), Expect = 1e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 ||||| || |||||||| | |||||||||||||| |||||||||||||| || || || Sbjct 1939014 ATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 1938955 Query 14534 AAACCATAAAAACATCTAGCTTCTG 14558 |||||||| ||||| | ||||||| Sbjct 1938954 AAACCATAGAAACAGCGGGCTTCTG 1938930 >seq494 Length=1524325 Score = 87.8 bits (96), Expect = 2e-12 Identities = 213/318 (67%), Gaps = 6/318 (2%) Strand=Plus/Minus Query 14225 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 14284 ||||||| || ||||||||||| ||| ||||||| | || | ||||| || | |||| Sbjct 780065 CCCTCATAACTGCTAATAAGTTCATTTAAAAATGTGAGGCCAGACATCAGTCATGGTTTC 780006 Query 14285 tttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 14344 || ||||| ||||| | || || || |||||| |||| | || || |||| ||||| Sbjct 780005 TTGAACCAGAATATCGATGCAAAAGAACCGGAAGAGAAGGTGCCTTCTACTGTGGCAAAG 779946 Query 14345 GCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCA 14404 ||| | |||||||| | | | ||||||| ||||| ||||| | Sbjct 779945 GCTGCAACACGTTCTCCGTGGGTAACATCTTTGTTCACAATCCAACACAAGGCCCAATTT 779886 Query 14405 GAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA-AATGTTCCTTCTCTTT 14463 | | || || | | | ||| ||||||| ||||| || | || | |||| |||| Sbjct 779885 GCCTGCTTCTTGACACTAGGCATCCTTTCAATGGCATTGAAGAGAAACTCTCTTC-CTTT 779827 Query 14464 AGT-ACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCA 14522 | ||| || |||| ||| ||| | ||| ||| ||||| | |||||||||| Sbjct 779826 GTTGTCTTTAA---CATGTGTCAGTAAAGATATTATCCATGTCAGAATAGATGTTTTCCA 779770 Query 14523 TAGCTATCTGAAAACCAT 14540 |||| || || || |||| Sbjct 779769 TAGCAATTTGGAAGCCAT 779752 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 || || ||| |||| || | |||| |||||| ||| | || || || |||| ||| Sbjct 779254 TAGAAGTCAGCATCCAAAGTAAAAGAATTATCTATTTTACTTGACATCACTGCCATCTTT 779313 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 |||||||||| ||||| || |||||||| ||| | || ||||||||||| || || ||| Sbjct 779314 TGATATTCACCTACTCTCTTCTCAAAGAACTTAATCTTTCCTTCCAGTGAAATGTTCTCC 779373 Query 13976 A 13976 | Sbjct 779374 A 779374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482302454186080