Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq526 275 6e-69
seq630 250 2e-61
seq867 122 8e-23
seq2 114 1e-20
seq494 87.8 2e-12
>seq526
Length=1402496
Score = 275 bits (304), Expect = 6e-69
Identities = 550/809 (68%), Gaps = 6/809 (1%)
Strand=Plus/Plus
Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914
|| |||||| || | || | |||| ||| || | || | | || || || ||||| |
Sbjct 113334 TAGAAATCAGCACCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 113392
Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974
||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| ||
Sbjct 113393 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 113452
Query 13975 CATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 14034
|||||| ||||||||||| | | || || || | |||| ||||| | |
Sbjct 113453 CATAAAGTCAAATGGATTCTCTATTCTGAAAACCTTGCTAAAACCCAGTTCCAGCATG-- 113510
Query 14035 TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 14094
||| || || | |||||||| ||||| ||||| | |||||||| || || || |
Sbjct 113511 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTC 113570
Query 14095 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA- 14153
||||| | | || | ||| |||| |||||| ||||| | | | | ||
Sbjct 113571 CACAGGCAAGGCCTCAGTAAGAAACTCTTGTTCTATCCGAACAGCATTGATAGTTATTTC 113630
Query 14154 TCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 14213
|| || | | || | || || | | ||| ||||| || || | || |||||||
Sbjct 113631 TCTTACTC-TCTCCTCTGATGGTTTGTGTACTAGGTGTTTGAACATCAGGCAAGCAAAAT 113689
Query 14214 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 14273
| || | ||||||||||| |||| ||| || | |||||||| | || |||||||
Sbjct 113690 GTGAGTGTAAACCCTCATCTCTGCTAAAAAGGTCATGAGAAAATGTGAGGCCAGGCATCA 113749
Query 14274 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 14333
||||| ||| || | ||| ||||| | || || || || |||||| | || || || |
Sbjct 113750 GTCCTCATTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGTAGATGCCTTCCA 113809
Query 14334 CTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTC 14393
|||||||||| |||| | ||||| ||| | | || | ||||| | |||||
Sbjct 113810 CTGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCA 113869
Query 14394 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTT 14453
||||| || | || || || | | || ||| |||||||| ||||| || | | ||
Sbjct 113870 AGGCCCAATCTGCCTTCTTGTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATT 113929
Query 14454 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14513
|| | || || | | | ||||| || || ||||| | | |||||||||||| ||||
Sbjct 113930 CCCTTTCATTGGGATCTTTTATGTAAGTGTCGATAAGGAGACCATACATTTCAGAATGTA 113989
Query 14514 TGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTG 14573
|||||||||| || || || || ||||| ||||| | |||||| || | |||
Sbjct 113990 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGCCTTCTGTAATCTGAAGTTCTT 114049
Query 14574 AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14633
| ||||| || |||| |||||||| ||||| |||||||| ||||||| || ||||
Sbjct 114050 GGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAGGAAAGCCA 114109
Query 14634 ATATGTTTTTAATAAAGTATTGCTCTTCA 14662
| || ||||||||| ||| |||
Sbjct 114110 GAACGTGAGATATAAAGTATCTCTCCTCA 114138
>seq630
Length=879232
Score = 250 bits (276), Expect = 2e-61
Identities = 495/730 (68%), Gaps = 17/730 (2%)
Strand=Plus/Plus
Query 13904 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13963
|| ||||| | | || |||| ||||| || |||||||||||| | || |||||||||
Sbjct 417528 ACTCCCATCCTCTAATGCTCACCTACTCTCTTCTCAAAGAAGTTAATCTTTCCTTCCAGT 417587
Query 13964 GATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGT 14023
| ||||| |||||||| ||||||||||| | | || || || | |||| |||
Sbjct 417588 GGAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGT 417647
Query 14024 TCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATA 14083
|| | | | ||| || || | |||||||| ||||| ||||| | ||||||||
Sbjct 417648 TCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATC 417707
Query 14084 CCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCG 14143
|| || || || ||||| | || | || | || || | |||||| ||||| | |
Sbjct 417708 CCAATGAGCTTCACAGGCAAGATCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCATTG 417767
Query 14144 TTTATAATAATCGTAATAATT-TCA----TTAGAAGGAGGATATTTTAGATGTTTAAAAA 14198
||||| || | | || || | || || | | ||| |||| || |
Sbjct 417768 ---ATAATTAT--TTCTCTTTCTCCCGGCTCTGATGGTTTGTGTACTAGGTGTTGGAACA 417822
Query 14199 TTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATG 14258
| | || ||||||||||| || | ||||||||||| |||| |||||| || |||||||
Sbjct 417823 TCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAAAAAGTTCATTAGAAAATG 417882
Query 14259 TTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAA 14318
| | || ||||||| ||||||||| || | ||| ||||| | ||| || || || ||||
Sbjct 417883 TGAGGCCAGGCATCAGTCCTCGTTTCTTAAGCCAGAATATGGAAGCTAAAGAACCAGAAA 417942
Query 14319 AGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT 14378
|||| | || || ||||||||||| || |||| ||| | | || | |||||
Sbjct 417943 AGAAGACGCCTTCCACTGCAGCAAAGGC-------AGTTCACCATAGGTAGCCTCTTTGT 417995
Query 14379 TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14438
| ||||| |||| || | || || || | | || ||| |||||||| |
Sbjct 417996 CCCCAATCCAGCGCAAGGCCCGGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGG 418055
Query 14439 CATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14498
|||| || | | |||| | || | | | | || || || ||| |||| | ||||
Sbjct 418056 CATTGAAGAGAAATTCCCTTTCGCTGGGATCTTTTATATACGTGTCAGTAAGGAGACTAT 418115
Query 14499 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558
|||||||||| |||||||| ||||| | || || || ||||| ||||| | || ||||
Sbjct 418116 ACATTTCAGAATGTATGTTGTCCATGCCAATTTGGAATCCATAGAAACAGCGGGCCTCTG 418175
Query 14559 ACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14618
|| || ||| | ||||| || |||| |||||||| ||||| || ||||| |
Sbjct 418176 TAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCGTCACTTG 418235
Query 14619 CTGCAAAAAA 14628
||||||| ||
Sbjct 418236 CTGCAAAGAA 418245
>seq867
Length=266704
Score = 122 bits (134), Expect = 8e-23
Identities = 176/246 (72%), Gaps = 2/246 (1%)
Strand=Plus/Minus
Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914
|| || ||| |||| || | |||| ||| || | || | | || || || ||||| |
Sbjct 180929 TAGAAGTCAGCATCCAAGGTAAAATAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 180871
Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974
||||| |||| ||||| ||||||||||||||||| || ||||||||||| ||||| ||
Sbjct 180870 CTGATACTCACCTACTCTCTTTTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 180811
Query 13975 CATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 14034
|||||| ||||||||||| | | || || || | |||| ||| | | |
Sbjct 180810 CATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCGATTCCAGCATAAG 180751
Query 14035 TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 14094
|||||| || | |||||||| ||||| ||||| | |||||||| || || || ||
Sbjct 180750 TCTATCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATTCCGATGAGCTT 180691
Query 14095 TACAGG 14100
|||||
Sbjct 180690 CACAGG 180685
>seq2
Length=18007423
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285
|||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| |
Sbjct 1941489 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 1941430
Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345
| | ||| ||||| | || || || || |||||||| || || || ||||||||||| |
Sbjct 1941429 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCAAAGG 1941370
Query 14346 CTATTAATCGTTCTCC 14361
||| | ||||| ||
Sbjct 1941369 CTACGACACGTTCACC 1941354
Score = 98.7 bits (108), Expect = 1e-15
Identities = 106/138 (77%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914
|| || ||| |||| || | |||| ||| || | || | | || || || ||||| |
Sbjct 1943292 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 1943234
Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974
||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| ||
Sbjct 1943233 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 1943174
Query 13975 CATAAAATCAAATGGATT 13992
|||||| |||||||||||
Sbjct 1943173 CATAAAGTCAAATGGATT 1943156
Score = 91.5 bits (100), Expect = 1e-13
Identities = 71/85 (84%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533
||||| || |||||||| | |||||||||||||| |||||||||||||| || || ||
Sbjct 1939014 ATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 1938955
Query 14534 AAACCATAAAAACATCTAGCTTCTG 14558
|||||||| ||||| | |||||||
Sbjct 1938954 AAACCATAGAAACAGCGGGCTTCTG 1938930
>seq494
Length=1524325
Score = 87.8 bits (96), Expect = 2e-12
Identities = 213/318 (67%), Gaps = 6/318 (2%)
Strand=Plus/Minus
Query 14225 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 14284
||||||| || ||||||||||| ||| ||||||| | || | ||||| || | ||||
Sbjct 780065 CCCTCATAACTGCTAATAAGTTCATTTAAAAATGTGAGGCCAGACATCAGTCATGGTTTC 780006
Query 14285 tttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 14344
|| ||||| ||||| | || || || |||||| |||| | || || |||| |||||
Sbjct 780005 TTGAACCAGAATATCGATGCAAAAGAACCGGAAGAGAAGGTGCCTTCTACTGTGGCAAAG 779946
Query 14345 GCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCA 14404
||| | |||||||| | | | ||||||| ||||| ||||| |
Sbjct 779945 GCTGCAACACGTTCTCCGTGGGTAACATCTTTGTTCACAATCCAACACAAGGCCCAATTT 779886
Query 14405 GAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA-AATGTTCCTTCTCTTT 14463
| | || || | | | ||| ||||||| ||||| || | || | |||| ||||
Sbjct 779885 GCCTGCTTCTTGACACTAGGCATCCTTTCAATGGCATTGAAGAGAAACTCTCTTC-CTTT 779827
Query 14464 AGT-ACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCA 14522
| ||| || |||| ||| ||| | ||| ||| ||||| | ||||||||||
Sbjct 779826 GTTGTCTTTAA---CATGTGTCAGTAAAGATATTATCCATGTCAGAATAGATGTTTTCCA 779770
Query 14523 TAGCTATCTGAAAACCAT 14540
|||| || || || ||||
Sbjct 779769 TAGCAATTTGGAAGCCAT 779752
Score = 84.2 bits (92), Expect = 2e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915
|| || ||| |||| || | |||| |||||| ||| | || || || |||| |||
Sbjct 779254 TAGAAGTCAGCATCCAAAGTAAAAGAATTATCTATTTTACTTGACATCACTGCCATCTTT 779313
Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975
|||||||||| ||||| || |||||||| ||| | || ||||||||||| || || |||
Sbjct 779314 TGATATTCACCTACTCTCTTCTCAAAGAACTTAATCTTTCCTTCCAGTGAAATGTTCTCC 779373
Query 13976 A 13976
|
Sbjct 779374 A 779374
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482302454186080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |