Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq170 102 6e-17 seq25 95.1 9e-15 seq69 89.7 4e-13 seq573 87.8 1e-12 seq231 87.8 1e-12 seq3 87.8 1e-12 seq93 86.0 5e-12 seq434 84.2 2e-11 seq181 84.2 2e-11 seq4 84.2 2e-11 seq585 82.4 6e-11 seq64 82.4 6e-11 >seq170 Length=4466143 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || |||| |||||| || || |||||||| ||||||||||| | Sbjct 3883228 TCCCCCTCGGAGACGGAGGACCAGGTGAAGGGTGGACTCTTTTTGGATGTTGTAGTCAGA 3883287 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | |||||||| || || || ||| |||| | || || || || || Sbjct 3883288 CAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGG 3883347 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||| || || | | |||||| | ||| ||||||| |||||| Sbjct 3883348 GATGCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCAC 3883407 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||||||| | |||||||||| ||| || || || || |||||| Sbjct 3883408 CTCGAGGGTGATGGTCTTGCCGGTCAGTGTCTTCACGAAGATCTGCATT 3883456 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || || || || ||||||||||| | | || | |||| Sbjct 3883016 AGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGTGCGCCCATCT 3883075 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| || ||| |||| | ||| || || || || | ||||||||| || Sbjct 3883076 TCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 3883135 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | ||| ||||||| |||||| |||| ||||||| | Sbjct 3883136 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTC 3883195 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || ||||||| || || || || || |||||| Sbjct 3883196 TTACCGGTCAGGGTCTTCACGAAGATCTGCATT 3883228 >seq25 Length=15232693 Score = 95.1 bits (104), Expect = 9e-15 Identities = 111/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| | |||||| | | || || ||||| || |||| ||||| || || || |||||| Sbjct 12145226 TTCCTCTTGTTAGCACCACCACGAAGTCTCAGCACCAGATGAAGAGTAGACTCCTTTTGA 12145285 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||||||||| | || || | |||||| | ||| ||||| |||||||| |||||| Sbjct 12145286 ATGTTGTAGTCAGACAGAGTACATCCATCTTCTAGTTGCTTGCCAGCATAGATCAGTCTT 12145345 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATC 18232 || ||||| || | ||||||||||| Sbjct 12145346 TGCTGATCAGGAGGAATTCCTTCCTTATC 12145374 >seq69 Length=11786368 Score = 89.7 bits (98), Expect = 4e-13 Identities = 172/253 (68%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 18078 AATACATTTTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135 || || | ||| |||| ||| | | || || ||||| | || | ||||| || || | Sbjct 9297260 AAGACTTCTTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACT 9297201 Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195 | || |||||||||||||| | || || | |||||||| ||| ||||| ||| ||| Sbjct 9297200 CCTTCTGAATGTTGTAGTCAGACAAAGTACCTCCATCTTCCAGTTGCTTGCCAGCAAAGA 9297141 Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG 18255 | |||||||| ||||| || | |||||||||||| || | ||| || | | Sbjct 9297140 TCAGTCTTTGCTGATCAGGAGGAATGCCTTCCTTATCTTGGATCTTGGCCTTTACATTTT 9297081 Query 18256 CAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAA 18315 | ||| || ||| || || | | ||||| | || || || | ||||| || | Sbjct 9297080 CTGTAGTATCCAAGGGTTCAACCTCGAGGTTGATGGTCTTCCCTGTAAGGGTTTTCACGA 9297021 Query 18316 AAATTTGCATTTT 18328 |||| |||||||| Sbjct 9297020 AAATCTGCATTTT 9297008 >seq573 Length=1150292 Score = 87.8 bits (96), Expect = 1e-12 Identities = 167/245 (68%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | | || || ||||| | || | ||||| || || || || ||| Sbjct 200455 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGA 200514 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||||||||| | || || | |||||||| ||| ||||| ||| |||| |||||| Sbjct 200515 ATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTT 200574 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263 || ||||| || | ||||||||||| || | ||| || | | | | || Sbjct 200575 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTA 200634 Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323 || ||| || || | ||||||| | || || || | ||||| || ||||| ||| Sbjct 200635 TCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGC 200694 Query 18324 ATTTT 18328 ||||| Sbjct 200695 ATTTT 200699 >seq231 Length=3498576 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 |||||||| | || || || |||||||| ||||||||||| | || || | | ||| Sbjct 69570 AAGTACCAGATATAGAGTGGACTCTTTTTGGATGTTGTAGTCAGACAGGGTGTGCCCATC 69629 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||| || || || ||| |||| | || | || || || | ||||||||| || Sbjct 69630 TTCCAGCTGCTTTCCAGCAAAGATCAACCTCCGCTGGTCAGGAGGGATGCCTTCCTTGTC 69689 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | | |||||| | ||| ||||||| ||||||| |||| ||||||| | Sbjct 69690 CTGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 69749 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || |||| || || || || || ||||| Sbjct 69750 CTTACCAGTCAGGGTCTTCACTAATATCTGCAT 69782 >seq3 Length=16812482 Score = 87.8 bits (96), Expect = 1e-12 Identities = 167/245 (68%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | | || || ||||| || || | ||||| || || || || ||| Sbjct 14706829 TTCCTTTTCTTAGCACCACCACGAAGTCTCAGCACAAGATGAAGAGTAGACTCCTTCTGA 14706888 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||||||||| | || || | |||||||| ||| ||||| ||| |||| |||||| Sbjct 14706889 ATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTT 14706948 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263 || ||||| || | ||||||||||| || | ||| || | | | | | Sbjct 14706949 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATA 14707008 Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323 || ||| || || | ||||||| | || || || | ||||| || ||||| ||| Sbjct 14707009 TCTGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGC 14707068 Query 18324 ATTTT 18328 ||||| Sbjct 14707069 ATTTT 14707073 >seq93 Length=13160294 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || || || ||||||||||||||||| | || || || |||||||| ||| Sbjct 4738368 TGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGGCAAAGTACAACCATCTTCCAGTTGC 4738427 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||| ||| |||| |||||||| ||||| || | ||||||||||| Sbjct 4738428 TTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 4738477 >seq434 Length=1819716 Score = 84.2 bits (92), Expect = 2e-11 Identities = 166/245 (68%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | | || || ||||| | || | ||||| || || || || ||| Sbjct 1331267 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGA 1331326 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||| ||||| | || || | |||||||| ||| ||||| ||| |||| |||||| Sbjct 1331327 ATGTTATAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTT 1331386 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263 || ||||| || | ||||||||||| || | ||| || | | | | || Sbjct 1331387 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTA 1331446 Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323 || ||| || || | ||||||| | || || || | ||||| || ||||| ||| Sbjct 1331447 TCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGC 1331506 Query 18324 ATTTT 18328 ||||| Sbjct 1331507 ATTTT 1331511 >seq181 Length=4179193 Score = 84.2 bits (92), Expect = 2e-11 Identities = 166/245 (68%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | | || || ||||| | || | ||||| || || || || ||| Sbjct 2580452 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGA 2580511 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||||||||| | || || | |||||||| ||| ||||| ||| |||| |||||| Sbjct 2580512 ATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTT 2580571 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263 || ||||| | | ||||||||||| || | ||| || | | | | || Sbjct 2580572 TGCTGATCAGGACGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTA 2580631 Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323 || ||| || || | ||||||| | || || || | ||||| || ||||| ||| Sbjct 2580632 TCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGC 2580691 Query 18324 ATTTT 18328 ||||| Sbjct 2580692 ATTTT 2580696 >seq4 Length=15321207 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || || || || |||||||||||||| | || || | |||||||| ||| Sbjct 5243198 TGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGC 5243139 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| |||||||| ||||| || | ||||||||||| |||| Sbjct 5243138 TTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTG 5243079 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | | | | || || ||| || || | ||| ||| | || || || Sbjct 5243078 GCCTTTACATTTTCTATCGTTTCCGAGGGTTCAACCTCGAGGGTTATGGTCTTCCCCGTA 5243019 Query 18303 AATGTTTTTACAAAAATTTGCATTTT 18328 | ||||| || ||||| |||||||| Sbjct 5243018 AGGGTTTTCACGAAAATCTGCATTTT 5242993 >seq585 Length=1056956 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | ||| || || || ||||| || ||||||||||| | || || | |||| Sbjct 519124 AGGACAAGGTGTAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAAGGTGCGCCCATCT 519183 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| | || || || || || | ||||||||| || Sbjct 519184 TCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 519243 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | |||||| | || ||||||| ||||||| |||| ||||||| | Sbjct 519244 TAGATCTTTGCCTTGACGTTCTTAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 519303 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || || |||| || || ||||| || |||||| Sbjct 519304 TTACCAGTCAGGGTCTTCACAAAGATCTGCATT 519336 >seq64 Length=8039362 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/157 (72%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 18078 AATACATTTTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135 || || | ||| |||| ||| | | || || ||||| | || | ||||| || || | Sbjct 5682540 AAGACTTCTTCCTTTTCTTAGCAACACCACGAAGTCTCAACACAAGATGAAGAGTAGACT 5682481 Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195 | || |||||||||||||| | || || | |||||||| ||| ||||| ||| ||| Sbjct 5682480 CCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAGAGA 5682421 Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 | |||||||| ||||| || | ||||||||||| Sbjct 5682420 TCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 5682384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379310915987220