Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq170 102 6e-17
seq25 95.1 9e-15
seq69 89.7 4e-13
seq573 87.8 1e-12
seq231 87.8 1e-12
seq3 87.8 1e-12
seq93 86.0 5e-12
seq434 84.2 2e-11
seq181 84.2 2e-11
seq4 84.2 2e-11
seq585 82.4 6e-11
seq64 82.4 6e-11
>seq170
Length=4466143
Score = 102 bits (112), Expect = 6e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || || || | || |||| |||||| || || |||||||| ||||||||||| |
Sbjct 3883228 TCCCCCTCGGAGACGGAGGACCAGGTGAAGGGTGGACTCTTTTTGGATGTTGTAGTCAGA 3883287
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
|| || | |||||||| || || || ||| |||| | || || || || ||
Sbjct 3883288 CAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGG 3883347
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| ||||||||| || || | | |||||| | ||| ||||||| ||||||
Sbjct 3883348 GATGCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCAC 3883407
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
|| | ||||||| | |||||||||| ||| || || || || ||||||
Sbjct 3883408 CTCGAGGGTGATGGTCTTGCCGGTCAGTGTCTTCACGAAGATCTGCATT 3883456
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| || || || || || || ||||||||||| | | || | ||||
Sbjct 3883016 AGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGTGCGCCCATCT 3883075
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| ||||| || ||| |||| | ||| || || || || | ||||||||| ||
Sbjct 3883076 TCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 3883135
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|| | |||||| | ||| ||||||| |||||| |||| ||||||| |
Sbjct 3883136 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTC 3883195
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
|| ||||||| || || || || || ||||||
Sbjct 3883196 TTACCGGTCAGGGTCTTCACGAAGATCTGCATT 3883228
>seq25
Length=15232693
Score = 95.1 bits (104), Expect = 9e-15
Identities = 111/149 (74%), Gaps = 2/149 (1%)
Strand=Plus/Plus
Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143
||| | |||||| | | || || ||||| || |||| ||||| || || || ||||||
Sbjct 12145226 TTCCTCTTGTTAGCACCACCACGAAGTCTCAGCACCAGATGAAGAGTAGACTCCTTTTGA 12145285
Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203
||||||||||| | || || | |||||| | ||| ||||| |||||||| ||||||
Sbjct 12145286 ATGTTGTAGTCAGACAGAGTACATCCATCTTCTAGTTGCTTGCCAGCATAGATCAGTCTT 12145345
Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATC 18232
|| ||||| || | |||||||||||
Sbjct 12145346 TGCTGATCAGGAGGAATTCCTTCCTTATC 12145374
>seq69
Length=11786368
Score = 89.7 bits (98), Expect = 4e-13
Identities = 172/253 (68%), Gaps = 2/253 (1%)
Strand=Plus/Minus
Query 18078 AATACATTTTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135
|| || | ||| |||| ||| | | || || ||||| | || | ||||| || || |
Sbjct 9297260 AAGACTTCTTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACT 9297201
Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195
| || |||||||||||||| | || || | |||||||| ||| ||||| ||| |||
Sbjct 9297200 CCTTCTGAATGTTGTAGTCAGACAAAGTACCTCCATCTTCCAGTTGCTTGCCAGCAAAGA 9297141
Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG 18255
| |||||||| ||||| || | |||||||||||| || | ||| || | |
Sbjct 9297140 TCAGTCTTTGCTGATCAGGAGGAATGCCTTCCTTATCTTGGATCTTGGCCTTTACATTTT 9297081
Query 18256 CAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAA 18315
| ||| || ||| || || | | ||||| | || || || | ||||| || |
Sbjct 9297080 CTGTAGTATCCAAGGGTTCAACCTCGAGGTTGATGGTCTTCCCTGTAAGGGTTTTCACGA 9297021
Query 18316 AAATTTGCATTTT 18328
|||| ||||||||
Sbjct 9297020 AAATCTGCATTTT 9297008
>seq573
Length=1150292
Score = 87.8 bits (96), Expect = 1e-12
Identities = 167/245 (68%), Gaps = 2/245 (1%)
Strand=Plus/Plus
Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143
||| |||| ||| | | || || ||||| | || | ||||| || || || || |||
Sbjct 200455 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGA 200514
Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203
||||||||||| | || || | |||||||| ||| ||||| ||| |||| ||||||
Sbjct 200515 ATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTT 200574
Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263
|| ||||| || | ||||||||||| || | ||| || | | | | ||
Sbjct 200575 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTA 200634
Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323
|| ||| || || | ||||||| | || || || | ||||| || ||||| |||
Sbjct 200635 TCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGC 200694
Query 18324 ATTTT 18328
|||||
Sbjct 200695 ATTTT 200699
>seq231
Length=3498576
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172
|||||||| | || || || |||||||| ||||||||||| | || || | | |||
Sbjct 69570 AAGTACCAGATATAGAGTGGACTCTTTTTGGATGTTGTAGTCAGACAGGGTGTGCCCATC 69629
Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232
||||| || || || ||| |||| | || | || || || | ||||||||| ||
Sbjct 69630 TTCCAGCTGCTTTCCAGCAAAGATCAACCTCCGCTGGTCAGGAGGGATGCCTTCCTTGTC 69689
Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292
|| | | |||||| | ||| ||||||| ||||||| |||| ||||||| |
Sbjct 69690 CTGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 69749
Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| || |||| || || || || || |||||
Sbjct 69750 CTTACCAGTCAGGGTCTTCACTAATATCTGCAT 69782
>seq3
Length=16812482
Score = 87.8 bits (96), Expect = 1e-12
Identities = 167/245 (68%), Gaps = 2/245 (1%)
Strand=Plus/Plus
Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143
||| |||| ||| | | || || ||||| || || | ||||| || || || || |||
Sbjct 14706829 TTCCTTTTCTTAGCACCACCACGAAGTCTCAGCACAAGATGAAGAGTAGACTCCTTCTGA 14706888
Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203
||||||||||| | || || | |||||||| ||| ||||| ||| |||| ||||||
Sbjct 14706889 ATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTT 14706948
Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263
|| ||||| || | ||||||||||| || | ||| || | | | | |
Sbjct 14706949 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATA 14707008
Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323
|| ||| || || | ||||||| | || || || | ||||| || ||||| |||
Sbjct 14707009 TCTGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGC 14707068
Query 18324 ATTTT 18328
|||||
Sbjct 14707069 ATTTT 14707073
>seq93
Length=13160294
Score = 86.0 bits (94), Expect = 5e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
||||| || || || ||||||||||||||||| | || || || |||||||| |||
Sbjct 4738368 TGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGGCAAAGTACAACCATCTTCCAGTTGC 4738427
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232
||||| ||| |||| |||||||| ||||| || | |||||||||||
Sbjct 4738428 TTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 4738477
>seq434
Length=1819716
Score = 84.2 bits (92), Expect = 2e-11
Identities = 166/245 (68%), Gaps = 2/245 (1%)
Strand=Plus/Plus
Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143
||| |||| ||| | | || || ||||| | || | ||||| || || || || |||
Sbjct 1331267 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGA 1331326
Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203
||||| ||||| | || || | |||||||| ||| ||||| ||| |||| ||||||
Sbjct 1331327 ATGTTATAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTT 1331386
Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263
|| ||||| || | ||||||||||| || | ||| || | | | | ||
Sbjct 1331387 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTA 1331446
Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323
|| ||| || || | ||||||| | || || || | ||||| || ||||| |||
Sbjct 1331447 TCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGC 1331506
Query 18324 ATTTT 18328
|||||
Sbjct 1331507 ATTTT 1331511
>seq181
Length=4179193
Score = 84.2 bits (92), Expect = 2e-11
Identities = 166/245 (68%), Gaps = 2/245 (1%)
Strand=Plus/Plus
Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143
||| |||| ||| | | || || ||||| | || | ||||| || || || || |||
Sbjct 2580452 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGA 2580511
Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203
||||||||||| | || || | |||||||| ||| ||||| ||| |||| ||||||
Sbjct 2580512 ATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTT 2580571
Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263
|| ||||| | | ||||||||||| || | ||| || | | | | ||
Sbjct 2580572 TGCTGATCAGGACGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTA 2580631
Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323
|| ||| || || | ||||||| | || || || | ||||| || ||||| |||
Sbjct 2580632 TCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGC 2580691
Query 18324 ATTTT 18328
|||||
Sbjct 2580692 ATTTT 2580696
>seq4
Length=15321207
Score = 84.2 bits (92), Expect = 2e-11
Identities = 142/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
||||| || || || || |||||||||||||| | || || | |||||||| |||
Sbjct 5243198 TGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGC 5243139
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242
||||| ||| |||| |||||||| ||||| || | ||||||||||| ||||
Sbjct 5243138 TTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTG 5243079
Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302
||| || | | | | || || ||| || || | ||| ||| | || || ||
Sbjct 5243078 GCCTTTACATTTTCTATCGTTTCCGAGGGTTCAACCTCGAGGGTTATGGTCTTCCCCGTA 5243019
Query 18303 AATGTTTTTACAAAAATTTGCATTTT 18328
| ||||| || ||||| ||||||||
Sbjct 5243018 AGGGTTTTCACGAAAATCTGCATTTT 5242993
>seq585
Length=1056956
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| || | ||| || || || ||||| || ||||||||||| | || || | ||||
Sbjct 519124 AGGACAAGGTGTAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAAGGTGCGCCCATCT 519183
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| || || || ||| |||| | || || || || || | ||||||||| ||
Sbjct 519184 TCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 519243
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|| | | |||||| | || ||||||| ||||||| |||| ||||||| |
Sbjct 519244 TAGATCTTTGCCTTGACGTTCTTAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 519303
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
|| || |||| || || ||||| || ||||||
Sbjct 519304 TTACCAGTCAGGGTCTTCACAAAGATCTGCATT 519336
>seq64
Length=8039362
Score = 82.4 bits (90), Expect = 6e-11
Identities = 113/157 (72%), Gaps = 2/157 (1%)
Strand=Plus/Minus
Query 18078 AATACATTTTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135
|| || | ||| |||| ||| | | || || ||||| | || | ||||| || || |
Sbjct 5682540 AAGACTTCTTCCTTTTCTTAGCAACACCACGAAGTCTCAACACAAGATGAAGAGTAGACT 5682481
Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195
| || |||||||||||||| | || || | |||||||| ||| ||||| ||| |||
Sbjct 5682480 CCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAGAGA 5682421
Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232
| |||||||| ||||| || | |||||||||||
Sbjct 5682420 TCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 5682384
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379310915987220
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |