Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq526 125 1e-23 seq599 111 3e-19 seq2 89.7 1e-12 >seq526 Length=1402496 Score = 125 bits (138), Expect = 1e-23 Identities = 301/448 (67%), Gaps = 23/448 (5%) Strand=Plus/Minus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| |||||||||||||| ||||| |||| |||| |||| | || |||||||| |||| Sbjct 113827 TTGTAGCCTTTGCTGCAGTGGAAGGCATCTACTTTTCTGGTTCTTTTGCATCCATATTCT 113768 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || ||||||| | || | ||||||| ||||| | || |||| | || || | Sbjct 113767 GGCTCAAGAAATGAGGACTGATGCCTGGCCTCACATTTTCTCATGACCTTTTTAGCAGAG 113708 Query 102036 ACGAAGGTCTTCA-TCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACC 102094 | || ||| | || || | | ||||| ||| || |||| ||| | | || | | Sbjct 113707 ATGAGGGTTTACACTCAC-ATTTTGCTTGCCTGATGTTCAAACA---CCTAGTACACAAA 113652 Query 102095 CCATCAAGAGAAAGGATTCTTGAAAT---TGTCACTGAAGCCGTCCGAATTGAACAAGAA 102151 |||||| || || | ||||| | ||| | || || || || |||||||| Sbjct 113651 CCATCAGAGGAGAGAGTAAGAGAAATAACTATCA---ATGCTGTTCGGATAGAACAAGAG 113595 Query 102152 TTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAG 102211 ||||| || | || ||||||| | | | || ||||| |||| | |||| || Sbjct 113594 TTTCTTACTGAGGCCTTGCCTGTGGAGCTCATTGGGATGAATTGCACTCTAATGAAGCAA 113535 Query 102212 TACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG-ACTAGAAAAG----CACT 102266 |||||||| ||||||||||| | || || | ||| |||| ||| || | || Sbjct 113534 TACATTGAGTTTGTGGCAGACAGAC--ATGCTGGAACTGGGTTTTAGCAAGGTTTTCAGA 113477 Query 102267 ATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACT 102326 ||| | || || || || ||||| |||||||| || || ||||| |||| Sbjct 113476 ATAGAG-----AATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGAAAGACTAACT 113422 Query 102327 TTTTTGAAAAGAGAGTCGCCGAGTATCA 102354 | ||||| |||||||| | ||||||||| Sbjct 113421 TCTTTGAGAAGAGAGTAGGCGAGTATCA 113394 >seq599 Length=1005688 Score = 111 bits (122), Expect = 3e-19 Identities = 246/361 (68%), Gaps = 10/361 (3%) Strand=Plus/Plus Query 35333 ATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCA 35392 |||||| | || ||||| || || || ||| |||| || || || | || |||| | Sbjct 754069 ATCTGGGATGCCAATGGATCCCGAGACTTTCTGGATAGCTTGGGATTCTCCGCCAGAGAA 754128 Query 35393 GAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATAT-GA 35451 || || || ||||| || || || || ||||| ||| | |||||||| || ||||| || Sbjct 754129 GAAGGGGACTTGGGCCCAGTTTATGGCTTCCAGTGGAGGCATTTTGGGGCAGAATACAGA 754188 Query 35452 TACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATAT--ACTAAAG 35509 | || ||| |||||| | ||| | || |||| ||| | | || | ||| | Sbjct 754189 GATATGGA-TTCAGATTATTCAGGACAAGGAGTTGACCAACTA-CAAAGAGTGACTGAC- 754245 Query 35510 ACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGAT 35569 ||| | | | || || ||||| ||||| || || ||| || |||||||| | ||| Sbjct 754246 ACCATCAAAACCAACCCTGATGACAGAAGAATCATCATGTGCGCTTGGAATCCAAGAGAT 754305 Query 35570 CTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCT--CAATTTTATGTGGCTAATG 35627 |||| || ||||| || ||||||||| |||| | || || || || | || |||| Sbjct 754306 CTTCCTCTGATGGCGCTGCCTCCATGC--CATGCCCTCTGCCAGTTCTACGAGGTGAATG 754363 Query 35628 GAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCA 35687 | || |||| |||||| || | ||| || ||||| | || | || ||||| |||| Sbjct 754364 GTGAGCTGTCCTGCCAGCTGCACCAGAGATCAGGAGACATGGGCCTAGGTGTGCCTTTCA 754423 Query 35688 A 35688 | Sbjct 754424 A 754424 >seq2 Length=18007423 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||||||||||| ||||| ||||||||| |||| | || |||||||| |||||| Sbjct 1941366 GTAGCCTTTGCTGCAGTAGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGG 1941425 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 ||||||| | || | ||||||| ||||| | || ||||| Sbjct 1941426 CTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGA 1941469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989493268753980