Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq526 125 1e-23
seq599 111 3e-19
seq2 89.7 1e-12
>seq526
Length=1402496
Score = 125 bits (138), Expect = 1e-23
Identities = 301/448 (67%), Gaps = 23/448 (5%)
Strand=Plus/Minus
Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975
|||| |||||||||||||| ||||| |||| |||| |||| | || |||||||| ||||
Sbjct 113827 TTGTAGCCTTTGCTGCAGTGGAAGGCATCTACTTTTCTGGTTCTTTTGCATCCATATTCT 113768
Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035
|| ||||||| | || | ||||||| ||||| | || |||| | || || |
Sbjct 113767 GGCTCAAGAAATGAGGACTGATGCCTGGCCTCACATTTTCTCATGACCTTTTTAGCAGAG 113708
Query 102036 ACGAAGGTCTTCA-TCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACC 102094
| || ||| | || || | | ||||| ||| || |||| ||| | | || | |
Sbjct 113707 ATGAGGGTTTACACTCAC-ATTTTGCTTGCCTGATGTTCAAACA---CCTAGTACACAAA 113652
Query 102095 CCATCAAGAGAAAGGATTCTTGAAAT---TGTCACTGAAGCCGTCCGAATTGAACAAGAA 102151
|||||| || || | ||||| | ||| | || || || || ||||||||
Sbjct 113651 CCATCAGAGGAGAGAGTAAGAGAAATAACTATCA---ATGCTGTTCGGATAGAACAAGAG 113595
Query 102152 TTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAG 102211
||||| || | || ||||||| | | | || ||||| |||| | |||| ||
Sbjct 113594 TTTCTTACTGAGGCCTTGCCTGTGGAGCTCATTGGGATGAATTGCACTCTAATGAAGCAA 113535
Query 102212 TACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG-ACTAGAAAAG----CACT 102266
|||||||| ||||||||||| | || || | ||| |||| ||| || | ||
Sbjct 113534 TACATTGAGTTTGTGGCAGACAGAC--ATGCTGGAACTGGGTTTTAGCAAGGTTTTCAGA 113477
Query 102267 ATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACT 102326
||| | || || || || ||||| |||||||| || || ||||| ||||
Sbjct 113476 ATAGAG-----AATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGAAAGACTAACT 113422
Query 102327 TTTTTGAAAAGAGAGTCGCCGAGTATCA 102354
| ||||| |||||||| | |||||||||
Sbjct 113421 TCTTTGAGAAGAGAGTAGGCGAGTATCA 113394
>seq599
Length=1005688
Score = 111 bits (122), Expect = 3e-19
Identities = 246/361 (68%), Gaps = 10/361 (3%)
Strand=Plus/Plus
Query 35333 ATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCA 35392
|||||| | || ||||| || || || ||| |||| || || || | || |||| |
Sbjct 754069 ATCTGGGATGCCAATGGATCCCGAGACTTTCTGGATAGCTTGGGATTCTCCGCCAGAGAA 754128
Query 35393 GAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATAT-GA 35451
|| || || ||||| || || || || ||||| ||| | |||||||| || ||||| ||
Sbjct 754129 GAAGGGGACTTGGGCCCAGTTTATGGCTTCCAGTGGAGGCATTTTGGGGCAGAATACAGA 754188
Query 35452 TACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATAT--ACTAAAG 35509
| || ||| |||||| | ||| | || |||| ||| | | || | ||| |
Sbjct 754189 GATATGGA-TTCAGATTATTCAGGACAAGGAGTTGACCAACTA-CAAAGAGTGACTGAC- 754245
Query 35510 ACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGAT 35569
||| | | | || || ||||| ||||| || || ||| || |||||||| | |||
Sbjct 754246 ACCATCAAAACCAACCCTGATGACAGAAGAATCATCATGTGCGCTTGGAATCCAAGAGAT 754305
Query 35570 CTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCT--CAATTTTATGTGGCTAATG 35627
|||| || ||||| || ||||||||| |||| | || || || || | || ||||
Sbjct 754306 CTTCCTCTGATGGCGCTGCCTCCATGC--CATGCCCTCTGCCAGTTCTACGAGGTGAATG 754363
Query 35628 GAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCA 35687
| || |||| |||||| || | ||| || ||||| | || | || ||||| ||||
Sbjct 754364 GTGAGCTGTCCTGCCAGCTGCACCAGAGATCAGGAGACATGGGCCTAGGTGTGCCTTTCA 754423
Query 35688 A 35688
|
Sbjct 754424 A 754424
>seq2
Length=18007423
Score = 89.7 bits (98), Expect = 1e-12
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
|| |||||||||||||| ||||| ||||||||| |||| | || |||||||| ||||||
Sbjct 1941366 GTAGCCTTTGCTGCAGTAGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGG 1941425
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021
||||||| | || | ||||||| ||||| | || |||||
Sbjct 1941426 CTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGA 1941469
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989493268753980
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |