Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq526 273 2e-68 seq630 251 7e-62 seq2 116 3e-21 seq57 105 6e-18 seq80 87.8 2e-12 >seq526 Length=1402496 Score = 273 bits (302), Expect = 2e-68 Identities = 535/783 (68%), Gaps = 11/783 (1%) Strand=Plus/Plus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGA 11366 ||||||| | | ||| | ||| |||||| | ||||| || | |||| || | || | Sbjct 113360 ATTCTCTGTTGGACTTGACATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAA 113418 Query 11367 AAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACAT 11426 | || |||||||| ||||| ||||| |||| |||||||||| ||| ||||| | || Sbjct 113419 AGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTCTCTATTC 113478 Query 11427 TGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACT 11486 |||| || || | |||| | || | ||| ||||| || || || || || | Sbjct 113479 TGAAAACCTTGCTAAAACCCAGTTCCAGCATG--TCTGTCTGCCACAAACTCAATGTATT 113536 Query 11487 GAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACT 11546 | ||||| | |||||||| || || || ||||| || | || | || | ||||| Sbjct 113537 GCTTCATTAGAGTGCAATTCATCCCAATGAGCTCCACAGGCAAGGCCTCAGTAAGAAACT 113596 Query 11547 CCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGAT 11606 | | |||||| ||| |||| || |||| ||| |||| |||||| | Sbjct 113597 CTTGTTCTATCCGAACAGCATTGATAGTTATTTCTCTTACTCTCTCCTCTGATGGTTTGT 113656 Query 11607 GTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTA 11666 ||| || ||||| ||||| | || ||||||| | |||||||| || ||||| || | Sbjct 113657 GTACTAGGTGTTTGAACATCAGGCAAGCAAAATGTGAGTGTAAACCCTCATCTCTGCTAA 113716 Query 11667 TTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAG 11726 || |||| ||||||||| | || ||||||| ||||| ||| || | ||| ||||| | Sbjct 113717 AAAGGTCATGAGAAAATGTGAGGCCAGGCATCAGTCCTCATTTCTTGAGCCAGAATATGG 113776 Query 11727 CAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTC 11786 ||||| |||||||||||| | || || ||||| || ||||| ||||| || | ||| | Sbjct 113777 ATGCAAAAGAACCAGAAAAGTAGATGCCTTCCACTGCAGCAAAGGCTACAACGCGTTCAC 113836 Query 11787 CATA--TA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGC 11843 |||| || ||| ||| ||||| ||||||||| || ||||| || || | Sbjct 113837 CATAGGTAGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTGTTGACAC 113896 Query 11844 ATTCCATTGTTTCTATAGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACATA 11901 | ||| ||||| || || || | | |||| | |||| | |||| ||| || Sbjct 113897 AAGGCATCGTTTCAATGGCATTGAAGAGAAATTC--CCTTTCATTGGGATCTTTTATGTA 113954 Query 11902 TGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCC 11961 || || || | | || ||||||||| ||||| || |||||||| || ||||| || || Sbjct 113955 AGTGTCGATAAGGAGACCATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCC 114014 Query 11962 ATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTC 12021 ||||||||| | | |||| | ||| | || ||||| ||| | || || || Sbjct 114015 ATAGAAACAGCAGCCTTCTGTAATCTGAAGTTCTTGGCTAAATCGCTCCACCAAGTTTTC 114074 Query 12022 ATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTC 12081 |||||| || |||||||| | ||||| || || || | || |||||||||| | || Sbjct 114075 ATTTACTATGCCATCACTTGCTGCAAGGAAAGCCAGAACGTGAGATATAAAGTATCTCTC 114134 Query 12082 GTC 12084 || Sbjct 114135 CTC 114137 >seq630 Length=879232 Score = 251 bits (278), Expect = 7e-62 Identities = 499/730 (68%), Gaps = 18/730 (2%) Strand=Plus/Plus Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTA 11387 ||| |||||| | | || |||| |||| || | || || || ||| |||| ||||| | Sbjct 417527 CACTCCCATCCTCTAATGCTCACCTACTC-TCTTCTCAAAGAAGTTAATCTTTCCTTCCA 417585 Query 11388 GTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTA 11447 ||| |||| |||||||||| ||| ||||| | ||| |||| || || | |||| | Sbjct 417586 GTGGAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCA 417645 Query 11448 ACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCA 11507 || | | ||| ||||| || || || || || || ||||| | ||||||| Sbjct 417646 GTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCA 417705 Query 11508 TACCTATAAGATCCACCGG-AATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCA 11566 | || || || | ||| || || | | | || | ||||||| |||||| ||| ||| Sbjct 417706 TCCCAATGAGCTTCACAGGCAAGATCT-CAGTGAGGAACTCCTGTTCTATCCGAACAGCA 417764 Query 11567 TCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATT 11626 | || ||||| || | || |||||| |||| || |||| ||||| Sbjct 417765 TTGATAATTATTTCTCTTTCTCCCGGCTCTGATGGTTTGTGTACTAGGTGTTGGAACATC 417824 Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 | || ||||||||||| |||||||| || ||||| || | ||||||||||||||||| Sbjct 417825 AGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAAAAAGTTCATTAGAAAATGTG 417884 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746 | || ||||||| ||||||||| || | ||| ||||| | ||| || |||||||||||| Sbjct 417885 AGGCCAGGCATCAGTCCTCGTTTCTTAAGCCAGAATATGGAAGCTAAAGAACCAGAAAAG 417944 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TA-CCTTGTTGCTA 11803 || | || ||||| || ||||| || ||| ||||| || ||| ||| Sbjct 417945 AAGACGCCTTCCACTGCAGCAAAGGC-------AGTTCACCATAGGTAGCCTCTTTGTCC 417997 Query 11804 GATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCG 11863 ||||| ||||| || || ||||| || || || ||| ||||| || || Sbjct 417998 CCAATCCAGCGCAAGGCCCGGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCA 418057 Query 11864 TT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTAT 11921 || | | |||| | |||| | |||| ||| ||| || || | | | ||||| Sbjct 418058 TTGAAGAGAAATTC--CCTTTCGCTGGGATCTTTTATATACGTGTCAGTAAGGAGACTAT 418115 Query 11922 ACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981 ||||||| ||||| || || ||||| | ||||| |||||||||||||| || ||||||| Sbjct 418116 ACATTTCAGAATGTATGTTGTCCATGCCAATTTGGAATCCATAGAAACAGCGGGCCTCTG 418175 Query 11982 AACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAG 12041 | ||| || || ||||| ||| | || || |||||||| || || ||||| | Sbjct 418176 TAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCGTCACTTG 418235 Query 12042 ATGCAAAAAA 12051 |||||| || Sbjct 418236 CTGCAAAGAA 418245 >seq2 Length=18007423 Score = 116 bits (128), Expect = 3e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || ||||||||||||||||| | || ||||||| ||||||||| || Sbjct 1941487 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 1941428 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| || || || || || ||||| ||| Sbjct 1941427 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCAAAGGCT 1941368 Query 11774 ACTACTCTTTCTCC 11787 || || | ||| || Sbjct 1941367 ACGACACGTTCACC 1941354 >seq57 Length=8566406 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| || | Sbjct 1418655 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCTGGCATAAGACCTCTCTTCT 1418714 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| | ||| || ||||| || || | Sbjct 1418715 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCGAAGG 1418774 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 1418775 CCACCACTCTTTCCCC 1418790 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||||| | || || ||||||| ||||| ||||| |||||||||| ||| || || Sbjct 1424888 ATCTCTGATGTAAGTGTCTATTAGCAAACTGTACATCTCTGAATGAACATTCTCGATGAG 1424947 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995 |||||||| ||||||||||| || ||||||| | ||| || ||| Sbjct 1424948 AATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGCACCTCC 1424993 >seq80 Length=8459403 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| || ||||| || || |||||||| Sbjct 1278101 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATA 1278160 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || || |||||||| || || || || | Sbjct 1278161 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 1278220 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 1278221 CTGTTTCTTATACCAT 1278236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468482890456640