Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq526 273 2e-68
seq630 251 7e-62
seq2 116 3e-21
seq57 105 6e-18
seq80 87.8 2e-12
>seq526
Length=1402496
Score = 273 bits (302), Expect = 2e-68
Identities = 535/783 (68%), Gaps = 11/783 (1%)
Strand=Plus/Plus
Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGA 11366
||||||| | | ||| | ||| |||||| | ||||| || | |||| || | || |
Sbjct 113360 ATTCTCTGTTGGACTTGACATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAA 113418
Query 11367 AAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACAT 11426
| || |||||||| ||||| ||||| |||| |||||||||| ||| ||||| | ||
Sbjct 113419 AGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTCTCTATTC 113478
Query 11427 TGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACT 11486
|||| || || | |||| | || | ||| ||||| || || || || || |
Sbjct 113479 TGAAAACCTTGCTAAAACCCAGTTCCAGCATG--TCTGTCTGCCACAAACTCAATGTATT 113536
Query 11487 GAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACT 11546
| ||||| | |||||||| || || || ||||| || | || | || | |||||
Sbjct 113537 GCTTCATTAGAGTGCAATTCATCCCAATGAGCTCCACAGGCAAGGCCTCAGTAAGAAACT 113596
Query 11547 CCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGAT 11606
| | |||||| ||| |||| || |||| ||| |||| |||||| |
Sbjct 113597 CTTGTTCTATCCGAACAGCATTGATAGTTATTTCTCTTACTCTCTCCTCTGATGGTTTGT 113656
Query 11607 GTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTA 11666
||| || ||||| ||||| | || ||||||| | |||||||| || ||||| || |
Sbjct 113657 GTACTAGGTGTTTGAACATCAGGCAAGCAAAATGTGAGTGTAAACCCTCATCTCTGCTAA 113716
Query 11667 TTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAG 11726
|| |||| ||||||||| | || ||||||| ||||| ||| || | ||| ||||| |
Sbjct 113717 AAAGGTCATGAGAAAATGTGAGGCCAGGCATCAGTCCTCATTTCTTGAGCCAGAATATGG 113776
Query 11727 CAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTC 11786
||||| |||||||||||| | || || ||||| || ||||| ||||| || | ||| |
Sbjct 113777 ATGCAAAAGAACCAGAAAAGTAGATGCCTTCCACTGCAGCAAAGGCTACAACGCGTTCAC 113836
Query 11787 CATA--TA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGC 11843
|||| || ||| ||| ||||| ||||||||| || ||||| || || |
Sbjct 113837 CATAGGTAGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTGTTGACAC 113896
Query 11844 ATTCCATTGTTTCTATAGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACATA 11901
| ||| ||||| || || || | | |||| | |||| | |||| ||| ||
Sbjct 113897 AAGGCATCGTTTCAATGGCATTGAAGAGAAATTC--CCTTTCATTGGGATCTTTTATGTA 113954
Query 11902 TGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCC 11961
|| || || | | || ||||||||| ||||| || |||||||| || ||||| || ||
Sbjct 113955 AGTGTCGATAAGGAGACCATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCC 114014
Query 11962 ATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTC 12021
||||||||| | | |||| | ||| | || ||||| ||| | || || ||
Sbjct 114015 ATAGAAACAGCAGCCTTCTGTAATCTGAAGTTCTTGGCTAAATCGCTCCACCAAGTTTTC 114074
Query 12022 ATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTC 12081
|||||| || |||||||| | ||||| || || || | || |||||||||| | ||
Sbjct 114075 ATTTACTATGCCATCACTTGCTGCAAGGAAAGCCAGAACGTGAGATATAAAGTATCTCTC 114134
Query 12082 GTC 12084
||
Sbjct 114135 CTC 114137
>seq630
Length=879232
Score = 251 bits (278), Expect = 7e-62
Identities = 499/730 (68%), Gaps = 18/730 (2%)
Strand=Plus/Plus
Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTA 11387
||| |||||| | | || |||| |||| || | || || || ||| |||| ||||| |
Sbjct 417527 CACTCCCATCCTCTAATGCTCACCTACTC-TCTTCTCAAAGAAGTTAATCTTTCCTTCCA 417585
Query 11388 GTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTA 11447
||| |||| |||||||||| ||| ||||| | ||| |||| || || | |||| |
Sbjct 417586 GTGGAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCA 417645
Query 11448 ACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCA 11507
|| | | ||| ||||| || || || || || || ||||| | |||||||
Sbjct 417646 GTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCA 417705
Query 11508 TACCTATAAGATCCACCGG-AATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCA 11566
| || || || | ||| || || | | | || | ||||||| |||||| ||| |||
Sbjct 417706 TCCCAATGAGCTTCACAGGCAAGATCT-CAGTGAGGAACTCCTGTTCTATCCGAACAGCA 417764
Query 11567 TCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATT 11626
| || ||||| || | || |||||| |||| || |||| |||||
Sbjct 417765 TTGATAATTATTTCTCTTTCTCCCGGCTCTGATGGTTTGTGTACTAGGTGTTGGAACATC 417824
Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686
| || ||||||||||| |||||||| || ||||| || | |||||||||||||||||
Sbjct 417825 AGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAAAAAGTTCATTAGAAAATGTG 417884
Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746
| || ||||||| ||||||||| || | ||| ||||| | ||| || ||||||||||||
Sbjct 417885 AGGCCAGGCATCAGTCCTCGTTTCTTAAGCCAGAATATGGAAGCTAAAGAACCAGAAAAG 417944
Query 11747 AATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TA-CCTTGTTGCTA 11803
|| | || ||||| || ||||| || ||| ||||| || ||| |||
Sbjct 417945 AAGACGCCTTCCACTGCAGCAAAGGC-------AGTTCACCATAGGTAGCCTCTTTGTCC 417997
Query 11804 GATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCG 11863
||||| ||||| || || ||||| || || || ||| ||||| || ||
Sbjct 417998 CCAATCCAGCGCAAGGCCCGGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCA 418057
Query 11864 TT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTAT 11921
|| | | |||| | |||| | |||| ||| ||| || || | | | |||||
Sbjct 418058 TTGAAGAGAAATTC--CCTTTCGCTGGGATCTTTTATATACGTGTCAGTAAGGAGACTAT 418115
Query 11922 ACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981
||||||| ||||| || || ||||| | ||||| |||||||||||||| || |||||||
Sbjct 418116 ACATTTCAGAATGTATGTTGTCCATGCCAATTTGGAATCCATAGAAACAGCGGGCCTCTG 418175
Query 11982 AACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAG 12041
| ||| || || ||||| ||| | || || |||||||| || || ||||| |
Sbjct 418176 TAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCGTCACTTG 418235
Query 12042 ATGCAAAAAA 12051
|||||| ||
Sbjct 418236 CTGCAAAGAA 418245
>seq2
Length=18007423
Score = 116 bits (128), Expect = 3e-21
Identities = 106/134 (79%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
|| ||||| || || ||||||||||||||||| | || ||||||| ||||||||| ||
Sbjct 1941487 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 1941428
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| ||| ||||| | ||||| |||||||||||||| || || || || || ||||| |||
Sbjct 1941427 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCAAAGGCT 1941368
Query 11774 ACTACTCTTTCTCC 11787
|| || | ||| ||
Sbjct 1941367 ACGACACGTTCACC 1941354
>seq57
Length=8566406
Score = 105 bits (116), Expect = 6e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711
|||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| || |
Sbjct 1418655 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCTGGCATAAGACCTCTCTTCT 1418714
Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771
||| ||| |||||||||||||| || || || ||||| | ||| || ||||| || || |
Sbjct 1418715 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCGAAGG 1418774
Query 11772 CTACTACTCTTTCTCC 11787
| || |||||||| ||
Sbjct 1418775 CCACCACTCTTTCCCC 1418790
Score = 84.2 bits (92), Expect = 2e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949
|||||| | || || ||||||| ||||| ||||| |||||||||| ||| || ||
Sbjct 1424888 ATCTCTGATGTAAGTGTCTATTAGCAAACTGTACATCTCTGAATGAACATTCTCGATGAG 1424947
Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995
|||||||| ||||||||||| || ||||||| | ||| || |||
Sbjct 1424948 AATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGCACCTCC 1424993
>seq80
Length=8459403
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| ||||| || || ||||| | ||||| || ||||| || || ||||||||
Sbjct 1278101 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATA 1278160
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
||||||||||| | | || |||| || || || |||||||| || || || || |
Sbjct 1278161 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 1278220
Query 37258 CTATTTCTCAATCCAT 37273
|| ||||| | ||||
Sbjct 1278221 CTGTTTCTTATACCAT 1278236
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468482890456640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |