Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq145 369 5e-97 seq526 347 2e-90 seq630 311 1e-79 seq28 246 4e-60 seq563 170 3e-37 seq867 120 4e-22 seq2 120 4e-22 seq80 113 6e-20 seq57 107 3e-18 >seq145 Length=5090371 Score = 369 bits (408), Expect = 5e-97 Identities = 372/481 (77%), Gaps = 2/481 (0%) Strand=Plus/Plus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 ||| || ||||| | |||||| || | |||||| | || ||| |||||||||||||| Sbjct 1307271 TTACTTTTTATTTACTGCTTCCAGAAACC-TAACAGGTACAGGAATAGATTGATGATATC 1307329 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 |||||||| |||| | ||||| | || ||||||||||| || ||||| | ||||| Sbjct 1307330 CAAGTAGAGGCTGATGGCAGCTAATAGGTACTCTTCAGGCGACAGTTTATGCCTCAGTGA 1307389 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 | ||||||||||| |||||||| || || | |||||| | ||||| | ||||| Sbjct 1307390 ATATGTGTCATAGATGATGAATCCACAAAAAAGAAGGGCTTCTGCAGCAGCTAAGACCAA 1307449 Query 9407 CTCCACTGTTTCACTTTGCACAAATATCCTCAAAAGTCCTGACAAAATTAAAATCCACAA 9466 ||||| ||| ||||| | | ||||| | |||| | |||||| | |||||| |||| Sbjct 1307450 CTCCATTGTCTCACTATAAAAAAATAACTTCAAGAATCCTGATAGGCACAAAATCTACAA 1307509 Query 9467 AGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGC 9526 | | |||||| |||||||||| ||| |||||||| ||||| |||||||||||||| | Sbjct 1307510 AAGAGCAAACAGCCCTGCTCCAAATTTGCTGAAATCCCTCTTAGATTGTAGAGTATACAC 1307569 Query 9527 AGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATC 9586 ||||| | || || ||||||||||||||||| ||||||||| || | | ||||| Sbjct 1307570 AGTCAAACTAAAAATTCCTGCAGTAGTCAGCATGGAAGCTTGCAGAATAATACATACATC 1307629 Query 9587 ATAGAAAGTAACAACAGAGGCCAGCGTTAGAGATTCCGACAGTGTAAATCCACAAAGCAG 9646 |||||||||||||||| |||| || |||| || |||||||||||||||| ||||||| Sbjct 1307630 ATAGAAAGTAACAACAACTGCCACAGTCAGAGCTT-CGACAGTGTAAATCCAAAAAGCAG 1307688 Query 9647 GTATAAATTCAGGGGATGTTTATGTCTGTGTAAAGTCAATGCGAAAATCAAGCCTATAGA 9706 ||| | || ||||||| |||||||||| |||||||||||| |||||||| || | ||| Sbjct 1307689 GTACAGGTTAAGGGGATACTTATGTCTGTTTAAAGTCAATGCAAAAATCAAACCCAGAGA 1307748 Query 9707 T 9707 | Sbjct 1307749 T 1307749 >seq526 Length=1402496 Score = 347 bits (384), Expect = 2e-90 Identities = 647/940 (69%), Gaps = 20/940 (2%) Strand=Plus/Plus Query 35811 TTTAAAAATCAACATCTAGAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 35867 |||| |||||| || | | | |||| ||| ||| | || ||||| |||||||| Sbjct 113332 TTTAGAAATCAGCACCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCCATCC 113391 Query 35868 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 35927 | || || || || || | || || || || ||||| || ||||| | ||| ||||| | Sbjct 113392 TCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCT 113451 Query 35928 CCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 35987 |||| || || |||||||| | | ||| || |||| |||| ||| || Sbjct 113452 CCATAAAGTCAAATGGATTCTCTATTCTGAAAACCTTGCTAAAACCCAGTTCCAGCATG- 113510 Query 35988 ATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 36047 ||| ||||| ||||| || || ||| ||||| | |||||||| || || || | Sbjct 113511 -TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 113569 Query 36048 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTA-TAATA 36106 || || | ||| |||||||||| |||||||| || || || | || || | || Sbjct 113570 CCACAGGCAAGGCCTCAGTAAGAAACTCTTGTTCTATCCGAACAGCAT-TGATAGTTATT 113628 Query 36107 GATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 36166 | ||||| | || || ||| | | || ||||| ||||||| || || ||| Sbjct 113629 TCTCTTACTCTCTCCTCTGATGGTTTGTGTACTAGGTGTTTGAACATCAGGCAAGCAAAA 113688 Query 36167 TCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 36226 | |||||| |||||| ||||| |||| | || | ||||| ||||| || ||||| Sbjct 113689 TGTGAGTGTAAACCCTCATCTCTGCTAAAAAGGTCATGAGAAAATGTGAGGCCAGGCATC 113748 Query 36227 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCT 36286 || || | || || ||||| |||||||| ||||| || ||||||||| | || ||||| Sbjct 113749 AGTCCTCATTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGTAGATGCCTTCC 113808 Query 36287 ACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTT 36343 ||||| |||||||| | || | || ||||| | | | |||| ||||| Sbjct 113809 ACTGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGC 113868 Query 36344 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAG 36403 |||||||| |||||||| || ||||||||||| || || || ||||| |||||| | Sbjct 113869 AAGGCCCAATCTGCCTTCTTGTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAAT 113928 Query 36404 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 36463 | ||||||| |||||| | || || || || | |||| ||||||||| ||||| Sbjct 113929 TCCCTTTCATTGGGATCTTTTATGTAAGTGTCGATAAGGAGACCATACATTTCAGAATGT 113988 Query 36464 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC-TCGGTAATCTGTACTTC 36522 |||||||| ||||| ||||| || || |||||||| | |||| || |||||||| | ||| Sbjct 113989 ATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGC-AGCCTTCTGTAATCTGAAGTTC 114047 Query 36523 TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 36582 | | |||||| || | || |||||||| ||||| || ||||| ||||||| || || Sbjct 114048 TTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAGGAAAGC 114107 Query 36583 CAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTG----A 36638 || || || |||||| ||| | || | || | || ||||| || || | Sbjct 114108 CAGAACGTGAGATATAAAGTATCTCTCCTCAGGCTTCAG-GGATTCC---CAGTGCCGTA 114163 Query 36639 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 36698 | || || || | || || || || | |||| || || || || ||||| |||| || Sbjct 114164 TGTCCTTGGACAGGTCTACCTCCTCAGCGCTCCAGAAGGAGGCGTCCGCCTTCTTATGCA 114223 Query 36699 TATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 | | |||||||| || || | || || ||||| ||||| Sbjct 114224 TCTGCCAGATGTTGTGGTACTCGATGGGGAAAATGACAAA 114263 >seq630 Length=879232 Score = 311 bits (344), Expect = 1e-79 Identities = 516/738 (70%), Gaps = 24/738 (3%) Strand=Plus/Plus Query 35852 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 35911 |||| |||||||| | | | ||||| || | || || || || ||| | || ||| Sbjct 417522 GACACCACTCCCATCCTCTAATGCTCACCTACTCTCTTCTCAAAGAAGTTAATCTTTCCT 417581 Query 35912 TCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAAT 35971 || | || ||||| ||||| || || |||||||| || | ||| || |||| Sbjct 417582 TCCAGTGGAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAA 417641 Query 35972 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 36031 |||| ||| || | ||| ||||| ||||| || || ||| ||||| | ||| Sbjct 417642 CCCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAA 417701 Query 36032 TTCATTCCTATAAGTTTAACTGG-AAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 36090 ||||| || || || || || || |||| | |||| || || || ||||| || || Sbjct 417702 TTCATCCCAATGAGCTTCACAGGCAAGATCT-CAGTGAGGAACTCCTGTTCTATCCGAAC 417760 Query 36091 CGCGTCTGTTATAATAGATATTACTGTTTCTTCA--CTCGG-TGGATAC---AATAAATG 36144 || | | ||||| |||| || ||||| | ||| | ||| | | || || Sbjct 417761 AGCAT---TGATAAT---TATTTCTCTTTCTCCCGGCTCTGATGGTTTGTGTACTAGGTG 417814 Query 36145 TTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTT 36204 || ||||||| || || ||||| ||||||| |||||| ||||| |||| | ||| || Sbjct 417815 TTGGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAAAAAGTTCATT 417874 Query 36205 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 36264 ||||| ||||| || ||||| || || || || |||||||| |||||||| || || || Sbjct 417875 AGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTAAGCCAGAATATGGAAGCTAAAGA 417934 Query 36265 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACC 36321 ||||||||||| | ||||| ||||| ||||||||| | || ||||| | | Sbjct 417935 ACCAGAAAAGAAGACGCCTTCCACTGCAGCAAAGGCAGT-------TCACCATAGGTAGC 417987 Query 36322 GGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 36381 | |||| ||||| |||| || |||||||| || ||||||||||| || Sbjct 417988 CTCTTTGTCCCCAATCCAGCGCAAGGCCCGGTCTGCCTTCTTCTTGACACAAGGCATCGT 418047 Query 36382 CTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAA 36441 || || ||||| |||||| | | |||| | |||||| | ||| || ||| | | Sbjct 418048 TTCAATGGCATTGAAGAGAAATTCCCTTTCGCTGGGATCTTTTATATACGTGTCAGTAAG 418107 Query 36442 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCT 36501 |||||||||||||| ||||| ||||| || ||| | ||||| ||||| |||||||| | Sbjct 418108 GAGACTATACATTTCAGAATGTATGTTGTCCATGCCAATTTGGAATCCATAGAAACAGCG 418167 Query 36502 AGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCC 36561 ||||| |||||||| |||||| | |||||| || | || |||||||| ||||| || Sbjct 418168 GGCCTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCC 418227 Query 36562 GTCACTGGCTGCAAAAAA 36579 |||||| |||||||| || Sbjct 418228 GTCACTTGCTGCAAAGAA 418245 >seq28 Length=17023488 Score = 246 bits (272), Expect = 4e-60 Identities = 545/810 (67%), Gaps = 12/810 (1%) Strand=Plus/Minus Query 66062 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTC 66121 || |||||| |||||| | | |||||||||||| ||| | |||||||| | ||||| Sbjct 16623679 TCATTTCATGAAGAGAGCTGCAATCCAAAGAGC---AAAAAGATCTCTGGCACGCTGTTC 16623623 Query 66122 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTC 66181 || ||| || ||||||| || | ||| | ||| | | || || ||||||| || || Sbjct 16623622 TTCCTTTTCTATATTCTTCTTTAAATCAAAGAATTCAAAGATGTCTAAATGCCAAGGCTC 16623563 Query 66182 CAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCT-GATCTATGTATCTAGCGG 66240 || ||| || || | ||||||| | ||||| ||| ||| |||| | |||| ||| | Sbjct 16623562 CAGGTAAATAGCAAATGCTCCAGGACACTTGTT-CCTACCTCGATCCAGATATCAAGCTG 16623504 Query 66241 TGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGA 66300 |||| ||||| ||||||| ||| | | || |||||||| | ||||| ||| | | | Sbjct 16623503 TGTTGTTATATACTCTCAGCATCAGTACAAGGCCATTGGAATTGCCATTCGTCTCAGCAA 16623444 Query 66301 TATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAG 66360 | ||||| ||| | || | |||| ||| | | | ||| ||||| || | ||||| Sbjct 16623443 TGTAGCTGCCAGTAGCCCAAATACAACTCACAGCAACACCAATTCCTCCACCAGATTTAG 16623384 Query 66361 AGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGT 66420 | || ||||| || | |||| || ||||| ||||| || || || |||| |||| Sbjct 16623383 AAATCAATGCATATTGCTTTAGAGTGTCATAAATGCCTTCAATGCTGTCATATTTCATAC 16623324 Query 66421 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 66480 | || |||||||||||||| | ||| | | | || || || | || | || || | Sbjct 16623323 TCAGAAGAAAACAGCTAGAAAGTTGTGGGCAGTTGGTACCAACACTGAAGAGAGTTGGTG 16623264 Query 66481 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT---ACGTCTCAATAGCTGAGTCTA 66537 |||| || |||||| | | |||| ||| ||||||| || ||||| ||| || | Sbjct 16623263 AAGCATGAGTAAACTACCTCTCAGGAAGAAGATTGTCTGCTGTTTCAATTGCTACATCAA 16623204 Query 66538 TATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGA 66597 | || || || ||||| || | | | ||| ||||| ||| | ||| ||||| | | Sbjct 16623203 TGTCTTCTTTGTGGATTCCAACAGATGCTCTCATCAACATATGCCGTGGTATTTCAGCCA 16623144 Query 66598 TCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT 66657 || || ||||||||||| || || || | ||||||||||| || |||| Sbjct 16623143 CTTTTCCATTGATTTTCAACAAATAAGACCACTCTAGCAACTTAAAACCAAAGTAATTGT 16623084 Query 66658 ATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTA 66717 | || || ||| | || | |||| | | || || | | ||| |||| ||| | Sbjct 16623083 AAGAGAAATCTTGGTCACAGATAACAGCAGAATTCAAGTGATCTTTATTGGCCAAAACAA 16623024 Query 66718 CATCCA-TGGTAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATA 66775 ||||| || | |||| | | || ||||| | ||| |||| | ||| | | | Sbjct 16623023 TATCCAGTGCT--GACTTGGCCACCATGGGAGAGTATTTGTCATTATGTGGACTTATGCA 16622966 Query 66776 GTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGA 66835 ||| | | || |||||||| ||||| || | || |||||||||||||| | || || Sbjct 16622965 GTTATACAGGTCTTCCATCACATCACTGAACACTTCATTTGTTTCTTTGTGCAAGTTAGA 16622906 Query 66836 TACGGCTATTCTAGCGGCTATAATGGCATA 66865 || || | ||||| || | || ||||| Sbjct 16622905 GACAGCAGTCCTAGCTGCCAGGATAGCATA 16622876 >seq563 Length=1187434 Score = 170 bits (188), Expect = 3e-37 Identities = 151/189 (80%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 9244 CTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAGTAGAAATTGATAG 9303 |||||| || ||||||| |||| ||| |||||||||||||||||||||| |||||| Sbjct 785351 CTTCCAGAAATCGTAACAGGTGCAGGAATAGATTGATGATATCCAAGTAGAGGCTGATAG 785410 Query 9304 AGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGCGTGTCATAGATAA 9363 ||||| | || |||||||| || || ||||| || |||||||| ||||||||||||| Sbjct 785411 CAGCTAATATGTATTCTTCAGGTGACAGTTTATGCATCAGTGAGTGTGTGTCATAGATAA 785470 Query 9364 TGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCCACTGTTTCACTTT 9423 ||||||| ||||| | |||||| || ||||| | ||||| ||||||||| ||||| | Sbjct 785471 TGAATCCACAGAAAAGAAGGGCTCCTGCAGCAGCTAAGACCAACTCCACTGTCTCACTAT 785530 Query 9424 GCACAAATA 9432 | ||||| Sbjct 785531 AAAAAAATA 785539 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||| | ||| |||||||| ||||| | ||| |||||||| ||||| | ||| | Sbjct 793423 CCTGCTCCTAATTTGCTGAAATCCCTCTTAGCTTGCAGAGTATACATAGTCAAACCAAAA 793482 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || ||| |||||||||| ||| ||||||||| || | ||| || |||||||||||||| Sbjct 793483 AATACTCCAGTAGTCAGTATGTAAGCTTGCAGAATAATATGTACGTCATAGAAAGTAAC 793541 Score = 107 bits (118), Expect = 3e-18 Identities = 87/103 (84%), Gaps = 3/103 (3%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||||||| |||||||| ||||| || ||||| |||||||||||||||||| ||||||| Sbjct 816078 CCATTCGGATGTGCACGCTGGCGGAGGCCACGCTGCTGCCATAGTTGAAGTCATCCTCGA 816137 Query 9907 TGGAGGAGCACGCGTA--GAGGCTCGGCAT-GGCCATGGCGGC 9946 | |||||||| | ||| | || ||||||| |||||||||||| Sbjct 816138 TTGAGGAGCAAGGGTACCGGGGATCGGCATCGGCCATGGCGGC 816180 >seq867 Length=266704 Score = 120 bits (132), Expect = 4e-22 Identities = 256/382 (67%), Gaps = 3/382 (1%) Strand=Plus/Minus Query 35811 TTTAAAAATCAACATCTAGAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 35867 |||| || ||| |||| | | ||||| ||| ||| | || ||||| |||||||| Sbjct 180931 TTTAGAAGTCAGCATCCAAGGTAAAATAATTCTCTGTTGGACTTGACATCACTCCCATCC 180872 Query 35868 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 35927 | || || ||||| || | ||||| || || ||||| || ||||| | ||| ||||| | Sbjct 180871 TCTGATACTCACCTACTCTCTTTTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCT 180812 Query 35928 CCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 35987 |||| || || |||||||| || | ||| || |||| ||| |||| || | Sbjct 180811 CCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCGATTCCAGCATAA 180752 Query 35988 ATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 36047 ||||||||| ||||| || || ||| ||||| | ||||||||||| || || | Sbjct 180751 GTCTATCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATTCCGATGAGCT 180692 Query 36048 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 36107 | || || ||| |||| || || || ||||| || || || | | || || Sbjct 180691 TCACAGGCGAGGCCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCATTGATAATTATTT 180632 Query 36108 ATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 36167 | ||||| | || || ||| | | || |||||| |||| || || | |||| Sbjct 180631 CTCTTACTCTCTCCTCTGATGGTTTGTGTACTAGATGTTTGAACAACAGGCAAACAAAAT 180572 Query 36168 CGCAGTGTAGACCCTCGTCTCT 36189 | ||||||| |||| ||||| Sbjct 180571 CACAGTGTAAACCCGATTCTCT 180550 >seq2 Length=18007423 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| || ||||| ||||| || ||||| || || || || | Sbjct 1941489 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 1941430 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| |||||||| ||||| || ||||||||||| || ||||||||||| ||||||| Sbjct 1941429 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCAAAGG 1941370 Query 36300 C 36300 | Sbjct 1941369 C 1941369 Score = 100 bits (110), Expect = 4e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||| | || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 1939021 ATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 1938962 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 ||||| || || |||||||| | || || |||||||| |||||| | |||||| || Sbjct 1938961 AATTTGGAAACCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 1938902 >seq80 Length=8459403 Score = 113 bits (124), Expect = 6e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | | Sbjct 1278101 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATA 1278160 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 1278161 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 1278220 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 1278221 CTGTTTCTTATACCATA 1278237 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||| | Sbjct 1275313 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 1275372 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| ||| || |||||||| ||||| || || || || |||||||| || | | || | Sbjct 1275373 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCAGCAGCCATCTTGAGAACAGTTT 1275432 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 1275433 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 1275483 Score = 109 bits (120), Expect = 7e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||||||||| |||||||| |||||||||||||| | ||| | |||||||| | Sbjct 1289062 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAAAAAAGATCTCTGGCACG 1289121 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 ||||| || |||||||| ||||| || | ||| ||||| | | || || ||||||| Sbjct 1289122 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCCAGGAATTCAAAGATGTCTAAATGCCA 1289181 Query 66176 CGGTTCCAAGTATATGGC 66193 || |||| ||| || || Sbjct 1289182 AGGCTCCAGGTAAATAGC 1289199 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | || || ||||| || || || || | | Sbjct 1304487 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTGGCTGCCAGGA 1304546 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | ||||| || ||||| | ||||| | || || ||| |||| || |||| ||| || | Sbjct 1304547 TAGCATAGTCAGGATGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 1304606 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| ||||| || || ||| | || | |||||||| |||||||| Sbjct 1304607 GTTCCACCGTGGTGACCCCACTGTACAAGCCTTGGATTACCTTCAT 1304652 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 |||| || || |||||||| | || || ||| || ||||| || || || || || |||| Sbjct 1283222 CATAGGTTTCATATGGTCCATGCTCCTTAGCAAGGTCACAGCTGGCTTCCAAGGCTCCGT 1283281 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 ||||||| ||||| ||||||| |||||| | || ||||| || ||||| || | Sbjct 1283282 AATAAATAGTTTCAAAGATCTGCTTATTCAATAGCTGGGCTTCTGCACTCTCAAAAGGGT 1283341 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 | | | || ||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 1283342 ATCTCATCAGGATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGAC 1283401 Query 65599 TCTTATTAGA 65608 ||||| || Sbjct 1283402 GTTTATTTGA 1283411 >seq57 Length=8566406 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | ||| ||||||||||||||||| ||||| || || | ||| || Sbjct 1418657 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCTGGCATAAGACCTCTCTTCTTT 1418716 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| ||||| | ||||| ||||| || ||||||| ||||||||| || || ||||| Sbjct 1418717 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCGAAGGC 1418775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658113926443040