Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq599 233 2e-56
seq13 147 2e-30
>seq599
Length=1005688
Score = 233 bits (258), Expect = 2e-56
Identities = 479/707 (68%), Gaps = 5/707 (1%)
Strand=Plus/Minus
Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004
||||| ||||| || ||||| || || |||||||| || || |||||||||||| |||
Sbjct 754521 GTAAATATGGGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTG 754462
Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064
||||||| ||||| || | || |||||||||| |||| || || || || ||||||||
Sbjct 754461 CGCGATCACGTACGTGAGCAAGGTGTAGCTGGCGGTGTTGAAAGGCACACCTAGGCCCAT 754402
Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACA 21124
||| | || ||||||| |||||||||||||||||| || || |||| ||||| ||
Sbjct 754401 GTCTCCTGATCTCTGGTGCAGCTGGCAGGACAGCTCACCATTCACCTCGTAGAACTGGCA 754342
Query 21125 CAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACAT 21184
| | || || ||||| || |||||| | | || || || ||||| ||||||||
Sbjct 754341 GAGGGCATGGCATGGAGGCAGCGCCATCAGAGGAAGATCTCTTGGATTCCAAGCGCACAT 754282
Query 21185 AACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGCTGGTC 21244
| ||| | | || | || | || || || ||| | || |||||
Sbjct 754281 GATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAGTCACTCTTTGTAGTTGGTC 754222
Query 21245 CACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCA 21304
|| || || || || | | || | ||||| || ||||||||||| |||||
Sbjct 754221 AACTCCTTGTCCTGAATAATCTGAATCCATATCTCTGTATTCTGCCCCAAAATGCCTCCA 754162
Query 21305 CTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGCCCTGCGCCGC 21364
|||||| || || || || |||| || || || | | | ||| ||| |
Sbjct 754161 CTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAAGCTATC 754102
Query 21365 CAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCGCGGCGCGACAGTTCGGT 21424
|| |||| | ||||| || | || ||||| ||||| || || | ||||| || |
Sbjct 754101 CAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCTTT 754042
Query 21425 GGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACAC 21484
| | ||| ||| ||||||| |||||||||||||||| || ||| |||| |||||
Sbjct 754041 AG-CTTTCTGGGTCCCTTGATAAAGCACAGCAACTCCTCCAAAACACCCTTCCAGAACAC 753983
Query 21485 -CCTTTTGGTGGTTAACAGAGGAAACTCGTCCCTGAGGTTATATCGGGCCTGAAGCCCGA 21543
| |||||| || | ||||||||| || || || ||| | || || ||||| | ||||
Sbjct 753982 AACGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCCGA 753923
Query 21544 ACACGGACCTGGTGCCCACGCCCGTCCTGTCCTCCCTCTGCACGCCGTGTTTAATAATTA 21603
|||| ||| ||| || ||| || | || ||| || |||||| || ||
Sbjct 753922 ACACCGACAGGGTCCCGGTGCCGGTGCGATCGTCCTTCCTGACGCCGCCGCGAAGGATGT 753863
Query 21604 AATCCAGGTGCGCCAAGTACTGCAGCTCGCCGT--GGTCGCCGCGGC 21648
|||| ||| ||| || |||||| || |||| || ||||||||
Sbjct 753862 GCTCCATCTGCCCCAGGTGCTGCAGTTC-CCGTGAGGCGGCCGCGGC 753817
>seq13
Length=13416947
Score = 147 bits (162), Expect = 2e-30
Identities = 131/164 (80%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048
|||||||||||| ||| ||||||| ||||| || |||||||||||||| ||||| || |
Sbjct 11482518 TCAGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCAATGTTGAAAG 11482459
Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108
| || || ||||||||||| | || |||||||||||||||||||||||||| ||
Sbjct 11482458 GCACACCTAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCA 11482399
Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152
||||||| ||||| || | | || || ||||| || ||||||
Sbjct 11482398 CCACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATC 11482355
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427738692050880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |