Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq599 233 2e-56 seq13 147 2e-30 >seq599 Length=1005688 Score = 233 bits (258), Expect = 2e-56 Identities = 479/707 (68%), Gaps = 5/707 (1%) Strand=Plus/Minus Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004 ||||| ||||| || ||||| || || |||||||| || || |||||||||||| ||| Sbjct 754521 GTAAATATGGGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTG 754462 Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064 ||||||| ||||| || | || |||||||||| |||| || || || || |||||||| Sbjct 754461 CGCGATCACGTACGTGAGCAAGGTGTAGCTGGCGGTGTTGAAAGGCACACCTAGGCCCAT 754402 Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACA 21124 ||| | || ||||||| |||||||||||||||||| || || |||| ||||| || Sbjct 754401 GTCTCCTGATCTCTGGTGCAGCTGGCAGGACAGCTCACCATTCACCTCGTAGAACTGGCA 754342 Query 21125 CAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACAT 21184 | | || || ||||| || |||||| | | || || || ||||| |||||||| Sbjct 754341 GAGGGCATGGCATGGAGGCAGCGCCATCAGAGGAAGATCTCTTGGATTCCAAGCGCACAT 754282 Query 21185 AACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGCTGGTC 21244 | ||| | | || | || | || || || ||| | || ||||| Sbjct 754281 GATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAGTCACTCTTTGTAGTTGGTC 754222 Query 21245 CACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCA 21304 || || || || || | | || | ||||| || ||||||||||| ||||| Sbjct 754221 AACTCCTTGTCCTGAATAATCTGAATCCATATCTCTGTATTCTGCCCCAAAATGCCTCCA 754162 Query 21305 CTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGCCCTGCGCCGC 21364 |||||| || || || || |||| || || || | | | ||| ||| | Sbjct 754161 CTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAAGCTATC 754102 Query 21365 CAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCGCGGCGCGACAGTTCGGT 21424 || |||| | ||||| || | || ||||| ||||| || || | ||||| || | Sbjct 754101 CAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCTTT 754042 Query 21425 GGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACAC 21484 | | ||| ||| ||||||| |||||||||||||||| || ||| |||| ||||| Sbjct 754041 AG-CTTTCTGGGTCCCTTGATAAAGCACAGCAACTCCTCCAAAACACCCTTCCAGAACAC 753983 Query 21485 -CCTTTTGGTGGTTAACAGAGGAAACTCGTCCCTGAGGTTATATCGGGCCTGAAGCCCGA 21543 | |||||| || | ||||||||| || || || ||| | || || ||||| | |||| Sbjct 753982 AACGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCCGA 753923 Query 21544 ACACGGACCTGGTGCCCACGCCCGTCCTGTCCTCCCTCTGCACGCCGTGTTTAATAATTA 21603 |||| ||| ||| || ||| || | || ||| || |||||| || || Sbjct 753922 ACACCGACAGGGTCCCGGTGCCGGTGCGATCGTCCTTCCTGACGCCGCCGCGAAGGATGT 753863 Query 21604 AATCCAGGTGCGCCAAGTACTGCAGCTCGCCGT--GGTCGCCGCGGC 21648 |||| ||| ||| || |||||| || |||| || |||||||| Sbjct 753862 GCTCCATCTGCCCCAGGTGCTGCAGTTC-CCGTGAGGCGGCCGCGGC 753817 >seq13 Length=13416947 Score = 147 bits (162), Expect = 2e-30 Identities = 131/164 (80%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 |||||||||||| ||| ||||||| ||||| || |||||||||||||| ||||| || | Sbjct 11482518 TCAGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCAATGTTGAAAG 11482459 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | || |||||||||||||||||||||||||| || Sbjct 11482458 GCACACCTAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCA 11482399 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 ||||||| ||||| || | | || || ||||| || |||||| Sbjct 11482398 CCACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATC 11482355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427738692050880