Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq526 113 3e-20 seq630 107 1e-18 seq2 84.2 2e-11 >seq526 Length=1402496 Score = 113 bits (124), Expect = 3e-20 Identities = 392/598 (66%), Gaps = 43/598 (7%) Strand=Plus/Minus Query 22345 ATGTACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACTGAT 22404 ||| | |||||||| | || || || |||| || ||||||||| || || | || Sbjct 114224 ATGCATAAGAAGGCGGACGCCTCCTTCTGGAGCGCTGAGGAGGTAGACCTGTCCAAGGAC 114165 Query 22405 GTACGCCATTGGACAGAAAAACTGACCGAGGCTGAGCGCAGGTTC---ATGTCTCACATA 22461 |||| || ||| ||| |||| || ||||| || | | || |||||| | Sbjct 114164 ATACGGCACTGG---GAATCCCTGA---AGCCTGAGGAGAGATACTTTATATCTCACGTT 114111 Query 22462 CTGGCATTCTTTGCAATGGCA---GATGGCATTGTAGGCGACAACCTTGTGT-GCAATTT 22517 ||||| ||| ||||| ||| |||||||| ||| || ||| | ||| || |||| Sbjct 114110 CTGGCTTTCCTTGCA---GCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCGATTT 114054 Query 22518 CGCAAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAAT 22577 || || |||||| | ||| |||||| | | ||||||||| || || | || || Sbjct 114053 AGCCAA-GAACTTCAG---ATTACAGAAGGCTGCTGTTTCTATGGCTTCCAAATTGCCAT 113998 Query 22578 GGAAAATATACATGCTGAAATGTATACTCAGCTGATTATCACATTAGTAGCTAAAGA--- 22634 |||||| |||||| ||||||||||| || || || ||| | || ||||| Sbjct 113997 GGAAAACATACATTCTGAAATGTATGGTCTCCTTATCGACACTTACATA---AAAGATCC 113941 Query 22635 GAATCAAGCCGCA-TTGTTTTCA--GCAGCTGAAGATATGCCATGTGTTAAAGCCAAGGC 22691 ||| || | | || | |||| || |||| ||||| ||||| || ||||| Sbjct 113940 CAATGAAAGGGAATTTCTCTTCAATGCCATTGAAACGATGCCTTGTGTCAACAAGAAGGC 113881 Query 22692 ACAGTGGGC--TGCACAATGGCTGAAT--GCCACACATAAG---TCTATCGCAACACGTC 22744 | | ||||| ||| |||| || | ||| | | | |||| | | ||| Sbjct 113880 AGATTGGGCCTTGC------GCTGGATTGGGGACAAAGAGGCTACCTATGGTGA-ACGCG 113828 Query 22745 TCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCT 22804 | | |||||||| || || |||||| || |||||||| || ||||| ||||||||| Sbjct 113827 TTGTAGCCTTTGCTGCAGTGGAAGGCATCTACTTTTCTGGTTCTTTTGCATCCATATTCT 113768 Query 22805 GGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTG 22864 |||| |||||| | || ||||| || | | ||||| | || | ||||| | | Sbjct 113767 GGCTCAAGAAATGAGGACTGATGCCTGGCCTCACATTTTCTCATGACCTTTTTAGCAGAG 113708 Query 22865 ACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACC 22922 | || ||| |||||| | |||||||| || |||| | || | | | ||||||| Sbjct 113707 ATGAGGGTTTACACTCACATTTTGCTTGCCTGATGTTCAAACACCTAGTACACAAACC 113650 >seq630 Length=879232 Score = 107 bits (118), Expect = 1e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 |||||||| || || ||||||||| | |||||||| || || || ||||||||||||| Sbjct 417970 GCCTTTGCTGCAGTGGAAGGCGTCTTCTTTTCTGGTTCTTTAGCTTCCATATTCTGGCTT 417911 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 |||||||| || ||||| || | | ||||| || || | ||||| | || || Sbjct 417910 AAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTTTTAGCAGAGATGAG 417851 Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCTGTT 22901 ||| |||||||||| |||||||| || |||| Sbjct 417850 GGTTTACACTGTGATTTTGCTTGCCTGATGTT 417819 >seq2 Length=18007423 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 22740 ACGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCAT 22799 |||| || | |||||||| || || |||||| || | |||||||| || ||||| |||| Sbjct 1941359 ACGTGTCGTAGCCTTTGCTGCAGTAGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCCAT 1941418 Query 22800 ATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAG 22859 ||||||||| |||||||| || ||||| || | | ||||| || || | ||||| Sbjct 1941419 ATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATTAG 1941478 Query 22860 CCGTGACGA 22868 | | || || Sbjct 1941479 CAGAGATGA 1941487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356202531531868