Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq170 123 2e-23
seq585 104 2e-17
seq434 100 3e-16
seq231 98.7 1e-15
seq41 96.9 3e-15
seq1 91.5 1e-13
seq276 89.7 5e-13
seq503 84.2 2e-11
>seq170
Length=4466143
Score = 123 bits (136), Expect = 2e-23
Identities = 172/240 (72%), Gaps = 2/240 (1%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| ||||| | ||| | || | ||||| || ||||||||||| ||||| || || |
Sbjct 3883229 CCCCCTCGGAGACGGAGGACCAGGTGAAGGGTGGACTCTTTTTGGATGTTGTAGTCAGAC 3883288
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| | ||||| ||||| || || ||| |||||| | ||||| || |||||
Sbjct 3883289 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 3883348
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|||||||| ||||| ||| ||| || | | || | ||||| |||||||||||
Sbjct 3883349 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACC 3883408
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCTTATGTTTTA 139777
|| | ||| | ||||||||||||| || || ||||| || ||||| | | |||||||
Sbjct 3883409 TCGAGGGTGATGGTCTTGCCGGTCAGTGTCTTCACGAAGATCTGCATTG--TCTGTTTTA 3883466
Score = 109 bits (120), Expect = 5e-19
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606
|| |||| || ||||| | || ||||| || || ||||| || || | |||| |
Sbjct 3883010 AAGCGCAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGTGCGC 3883069
Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666
||||| |||||||| |||||| |||||| | ||||| || ||||| ||||||||
Sbjct 3883070 CCATCTTCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGGATGCCTTCC 3883129
Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726
||||| ||| || || | | || | ||||| ||||||||||||||| |||
Sbjct 3883130 TTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTG 3883189
Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
| ||||| ||||||| || || ||||| || |||||
Sbjct 3883190 ATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 3883227
>seq585
Length=1056956
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| ||||| | ||| | ||| | ||| | ||| |||||||| || ||||| || || |
Sbjct 518881 CCACCTCGGAGACGGAGAACCAGGTGTAGCGTGGACTCTTTCTGGATGTTGTAGTCAGAC 518940
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| | ||||| |||||||| | ||| |||||| | | ||| || |||||
Sbjct 518941 AAGGTGCGCCCATCTTCCAGCTGTTTCCAGGCAAAGATCAATCTCTACTGGTCAGGAGGG 519000
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
||||||| ||||| ||| ||| || | | || | ||||| |||||||||||
Sbjct 519001 GTGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 519060
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||| || | ||||| || |||| || || ||||| || |||||
Sbjct 519061 TCAAGGGCGATGGTCTTACCAGTCAGTGTCTTCACGAAGATCTGCAT 519107
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606
|| |||| || ||||| | || ||||| | || ||||| || || | |||| |
Sbjct 518662 AAGCGCAGGACCAAGTGCAGAGTGGACTCCTCCTGGATGTTGTAGTCAGATAGGGTGCGC 518721
Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666
||||| |||||||| |||||| |||||| | ||||| || ||||| |||||||
Sbjct 518722 CCATCTTCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGGGTGCCTTCC 518781
Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726
||||| ||| || || | | || | ||||| ||||||||||||| | |||
Sbjct 518782 TTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTG 518841
Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
| ||||| ||||||| || || | ||| || |||||
Sbjct 518842 ATGGTCTTACCGGTCAGGGTCTTCAAGAAGATCTGCAT 518879
>seq434
Length=1819716
Score = 100 bits (110), Expect = 3e-16
Identities = 146/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620
|||| |||||||| || ||||||||||| || || || | || | ||||| || ||
Sbjct 1331306 TGAAGAGTAGACTCCTTCTGAATGTTATAGTCAGACAAAGTACGTCCA-TCTTCCAGTTG 1331364
Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680
|| |||||| ||||||| | ||||||||| ||||| || ||||| || || ||| ||
Sbjct 1331365 CTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 1331424
Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740
|||| | ||| | || || | ||| || ||||| | ||| | ||||| || ||
Sbjct 1331425 GGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCTGT 1331484
Query 139741 CAACGTTTTTACGAATATTTGCAT 139764
| ||||| ||||| || |||||
Sbjct 1331485 AAGGGTTTTCACGAAAATCTGCAT 1331508
>seq231
Length=3498576
Score = 98.7 bits (108), Expect = 1e-15
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| ||||||||||| ||||| || || || ||| | ||||| ||||| || |||
Sbjct 69586 GTGGACTCTTTTTGGATGTTGTAGTCAGACAGGGTGTGCCCATCTTCCAGCTGCTTTCCA 69645
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| |||||| | |||| || ||||| |||||||| ||||| ||| ||| ||
Sbjct 69646 GCAAAGATCAACCTCCGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTG 69705
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| ||||||| ||||||| ||| | ||||| || |||| ||
Sbjct 69706 ACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTACCAGTCAGGGTC 69765
Query 139748 TTTACGAATATTTGCAT 139764
|| || ||||| |||||
Sbjct 69766 TTCACTAATATCTGCAT 69782
>seq41
Length=9995516
Score = 96.9 bits (106), Expect = 3e-15
Identities = 145/200 (73%), Gaps = 6/200 (3%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626
|| |||||||| || ||||| || || | |||| || | ||||| |||||||| ||
Sbjct 7312291 GTGGACTCTTTCTGGATGTTGTAGTCAGATAGGGTGCATCCA-TCTTCCAGCTGTTTCCC 7312233
Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686
|||| |||| | ||||| || ||||| |||||||||||||| ||| ||| ||
Sbjct 7312232 AGCAAAGATGGATCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCCTGGATCTTTGCCTT 7312173
Query 139687 TAGCTGTTC-CACT-GTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAAC 139744
|| |||| || | ||||| |||||| ||||| | ||| | |||||||| ||||
Sbjct 7312172 --GCCGTTCTCAATGGTGTCACCGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGA 7312115
Query 139745 GTTTTTACGAATATTTGCAT 139764
|| || ||||| || |||||
Sbjct 7312114 GTCTTCACGAAGATCTGCAT 7312095
>seq1
Length=21314971
Score = 91.5 bits (100), Expect = 1e-13
Identities = 152/216 (70%), Gaps = 4/216 (2%)
Strand=Plus/Minus
Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609
|||| || | ||| | || |||||||| || ||||| || || | | ||||
Sbjct 18631144 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTC--TGAGAGTGCGGCCA 18631087
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
|| || ||||||||||||||| | |||||||| ||||| || || || || ||||| |||
Sbjct 18631086 TCCTCCAGCTGTTTACCAGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCTTCCTTG 18631027
Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728
| ||| |||| | ||| | | | | ||||| ||||||| ||||||| ||| |
Sbjct 18631026 T-ATTGAATTTTGGCTTTGACATTCTTAATGGTGTCACTGGGCTCGACCTCAAGGGTGAT 18630968
Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||||||| || | || || || || || |||||
Sbjct 18630967 GGTCTTGCCCGTGACAGTCTTCACAAAGATCTGCAT 18630932
>seq276
Length=3089952
Score = 89.7 bits (98), Expect = 5e-13
Identities = 141/203 (69%), Gaps = 7/203 (3%)
Strand=Plus/Minus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621
|||| |||||||| || ||||||||||| || || || |||| || ||
Sbjct 1638078 TGAAGAGTAGACTCCTTCTGAATGTTATAGTCAGACAAAGT-------CCTTCCAGTTGC 1638026
Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681
|| |||||| ||||||| | ||||||||| ||||| || ||||| || || ||| ||
Sbjct 1638025 TTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 1637966
Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741
|||| | ||| | ||| || | ||| || ||||||| ||| | ||||| || |
Sbjct 1637965 GCCTTTACATTTTCTATTGTATCTGAGGGTTCAACCTCAAGGGTGATGGTCTTCCCCATA 1637906
Query 139742 AACGTTTTTACGAATATTTGCAT 139764
| ||||| | ||| || |||||
Sbjct 1637905 AGGGTTTTCATGAAAATCTGCAT 1637883
>seq503
Length=1449082
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/215 (69%), Gaps = 2/215 (1%)
Strand=Plus/Minus
Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609
|||| || | ||| | || |||||||| || ||||| ||||| | ||||
Sbjct 1047250 CGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCAGCCA 1047191
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
||||| ||||| || || ||| |||| || | ||||| ||||| | |||||||| ||
Sbjct 1047190 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGG--ATGCCTTCCTTA 1047133
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||| || || | | ||| | ||||| | ||||||||||| | ||| |
Sbjct 1047132 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTAGGCTCCACCTCCAAGGTGATG 1047073
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||||||||||| || || ||||| || | |||
Sbjct 1047072 GTCTTGCCGGTCAGGGTCTTCACGAAGATATACAT 1047038
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496019627075200
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