Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq170 123 2e-23 seq585 104 2e-17 seq434 100 3e-16 seq231 98.7 1e-15 seq41 96.9 3e-15 seq1 91.5 1e-13 seq276 89.7 5e-13 seq503 84.2 2e-11 >seq170 Length=4466143 Score = 123 bits (136), Expect = 2e-23 Identities = 172/240 (72%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | || | ||||| || ||||||||||| ||||| || || | Sbjct 3883229 CCCCCTCGGAGACGGAGGACCAGGTGAAGGGTGGACTCTTTTTGGATGTTGTAGTCAGAC 3883288 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| | ||||| ||||| || || ||| |||||| | ||||| || ||||| Sbjct 3883289 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 3883348 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| ||| || | | || | ||||| ||||||||||| Sbjct 3883349 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACC 3883408 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCTTATGTTTTA 139777 || | ||| | ||||||||||||| || || ||||| || ||||| | | ||||||| Sbjct 3883409 TCGAGGGTGATGGTCTTGCCGGTCAGTGTCTTCACGAAGATCTGCATTG--TCTGTTTTA 3883466 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 || |||| || ||||| | || ||||| || || ||||| || || | |||| | Sbjct 3883010 AAGCGCAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGTGCGC 3883069 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||||| |||||||| |||||| |||||| | ||||| || ||||| |||||||| Sbjct 3883070 CCATCTTCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGGATGCCTTCC 3883129 Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 ||||| ||| || || | | || | ||||| ||||||||||||||| ||| Sbjct 3883130 TTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTG 3883189 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||||| || || ||||| || ||||| Sbjct 3883190 ATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 3883227 >seq585 Length=1056956 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | ||| | ||| | ||| |||||||| || ||||| || || | Sbjct 518881 CCACCTCGGAGACGGAGAACCAGGTGTAGCGTGGACTCTTTCTGGATGTTGTAGTCAGAC 518940 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| | ||||| |||||||| | ||| |||||| | | ||| || ||||| Sbjct 518941 AAGGTGCGCCCATCTTCCAGCTGTTTCCAGGCAAAGATCAATCTCTACTGGTCAGGAGGG 519000 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||||| ||||| ||| ||| || | | || | ||||| ||||||||||| Sbjct 519001 GTGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 519060 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | ||||| || |||| || || ||||| || ||||| Sbjct 519061 TCAAGGGCGATGGTCTTACCAGTCAGTGTCTTCACGAAGATCTGCAT 519107 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 || |||| || ||||| | || ||||| | || ||||| || || | |||| | Sbjct 518662 AAGCGCAGGACCAAGTGCAGAGTGGACTCCTCCTGGATGTTGTAGTCAGATAGGGTGCGC 518721 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||||| |||||||| |||||| |||||| | ||||| || ||||| ||||||| Sbjct 518722 CCATCTTCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGGGTGCCTTCC 518781 Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 ||||| ||| || || | | || | ||||| ||||||||||||| | ||| Sbjct 518782 TTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTG 518841 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||||| || || | ||| || ||||| Sbjct 518842 ATGGTCTTACCGGTCAGGGTCTTCAAGAAGATCTGCAT 518879 >seq434 Length=1819716 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| |||||||| || ||||||||||| || || || | || | ||||| || || Sbjct 1331306 TGAAGAGTAGACTCCTTCTGAATGTTATAGTCAGACAAAGTACGTCCA-TCTTCCAGTTG 1331364 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| ||||||| | ||||||||| ||||| || ||||| || || ||| || Sbjct 1331365 CTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 1331424 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 |||| | ||| | || || | ||| || ||||| | ||| | ||||| || || Sbjct 1331425 GGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCTGT 1331484 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||| || ||||| Sbjct 1331485 AAGGGTTTTCACGAAAATCTGCAT 1331508 >seq231 Length=3498576 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||||||||| ||||| || || || ||| | ||||| ||||| || ||| Sbjct 69586 GTGGACTCTTTTTGGATGTTGTAGTCAGACAGGGTGTGCCCATCTTCCAGCTGCTTTCCA 69645 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | |||| || ||||| |||||||| ||||| ||| ||| || Sbjct 69646 GCAAAGATCAACCTCCGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTG 69705 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||| ||||||| ||| | ||||| || |||| || Sbjct 69706 ACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTACCAGTCAGGGTC 69765 Query 139748 TTTACGAATATTTGCAT 139764 || || ||||| ||||| Sbjct 69766 TTCACTAATATCTGCAT 69782 >seq41 Length=9995516 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/200 (73%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || |||||||| || ||||| || || | |||| || | ||||| |||||||| || Sbjct 7312291 GTGGACTCTTTCTGGATGTTGTAGTCAGATAGGGTGCATCCA-TCTTCCAGCTGTTTCCC 7312233 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 |||| |||| | ||||| || ||||| |||||||||||||| ||| ||| || Sbjct 7312232 AGCAAAGATGGATCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCCTGGATCTTTGCCTT 7312173 Query 139687 TAGCTGTTC-CACT-GTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAAC 139744 || |||| || | ||||| |||||| ||||| | ||| | |||||||| |||| Sbjct 7312172 --GCCGTTCTCAATGGTGTCACCGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGA 7312115 Query 139745 GTTTTTACGAATATTTGCAT 139764 || || ||||| || ||||| Sbjct 7312114 GTCTTCACGAAGATCTGCAT 7312095 >seq1 Length=21314971 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || |||||||| || ||||| || || | | |||| Sbjct 18631144 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTC--TGAGAGTGCGGCCA 18631087 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||||||||||||| | |||||||| ||||| || || || || ||||| ||| Sbjct 18631086 TCCTCCAGCTGTTTACCAGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCTTCCTTG 18631027 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 | ||| |||| | ||| | | | | ||||| ||||||| ||||||| ||| | Sbjct 18631026 T-ATTGAATTTTGGCTTTGACATTCTTAATGGTGTCACTGGGCTCGACCTCAAGGGTGAT 18630968 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| || | || || || || || ||||| Sbjct 18630967 GGTCTTGCCCGTGACAGTCTTCACAAAGATCTGCAT 18630932 >seq276 Length=3089952 Score = 89.7 bits (98), Expect = 5e-13 Identities = 141/203 (69%), Gaps = 7/203 (3%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| |||||||| || ||||||||||| || || || |||| || || Sbjct 1638078 TGAAGAGTAGACTCCTTCTGAATGTTATAGTCAGACAAAGT-------CCTTCCAGTTGC 1638026 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| ||||||| | ||||||||| ||||| || ||||| || || ||| || Sbjct 1638025 TTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 1637966 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 |||| | ||| | ||| || | ||| || ||||||| ||| | ||||| || | Sbjct 1637965 GCCTTTACATTTTCTATTGTATCTGAGGGTTCAACCTCAAGGGTGATGGTCTTCCCCATA 1637906 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | ||||| | ||| || ||||| Sbjct 1637905 AGGGTTTTCATGAAAATCTGCAT 1637883 >seq503 Length=1449082 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || |||||||| || ||||| ||||| | |||| Sbjct 1047250 CGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCAGCCA 1047191 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| |||| || | ||||| ||||| | |||||||| || Sbjct 1047190 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGG--ATGCCTTCCTTA 1047133 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | ||| | ||||| | ||||||||||| | ||| | Sbjct 1047132 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTAGGCTCCACCTCCAAGGTGATG 1047073 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||||| || || ||||| || | ||| Sbjct 1047072 GTCTTGCCGGTCAGGGTCTTCACGAAGATATACAT 1047038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496019627075200