Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq526 289 3e-73
seq630 257 2e-63
seq867 125 7e-24
seq2 120 3e-22
seq494 100 3e-16
>seq526
Length=1402496
Score = 289 bits (320), Expect = 3e-73
Identities = 610/900 (68%), Gaps = 16/900 (2%)
Strand=Plus/Plus
Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582
|| |||||| || | || | |||| ||| || | || | | || || || ||||| |
Sbjct 113334 TAGAAATCAGCACCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 113392
Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642
||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| ||
Sbjct 113393 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 113452
Query 13643 CATAAAATCAAATGGATT---TATTGACATAAACACTTTATCACAACCTAGTTCTAATAG 13699
|||||| ||||||||||| |||| | |||| ||| | | |||| ||||| | |
Sbjct 113453 CATAAAGTCAAATGGATTCTCTATTCTGA-AAAC-CTTGCTAA-AACCCAGTTCCAGCAT 113509
Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759
||| || || | ||||||||| ||||| ||||| | |||||||| || || ||
Sbjct 113510 G--TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAG 113567
Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819
| ||||| | | || | ||| |||| |||||| ||||| | | ||| |
Sbjct 113568 CTCCACAGGCAAGGCCTCAGTAAGAAACTCTTGTTCTATCCGAACAGCAT---TGATAGT 113624
Query 13820 AATTGTAATAA---TCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGC 13876
||| | | |||| | || || | | ||| ||||| || || | || ||
Sbjct 113625 TATTTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTAGGTGTTTGAACATCAGGCAAGC 113684
Query 13877 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 13936
||||| | || | ||||||||||| |||| ||| || | |||||||| | || ||
Sbjct 113685 AAAATGTGAGTGTAAACCCTCATCTCTGCTAAAAAGGTCATGAGAAAATGTGAGGCCAGG 113744
Query 13937 CATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCC 13996
||||| ||||| ||| || | ||| ||||| | ||||| || || |||||| | || ||
Sbjct 113745 CATCAGTCCTCATTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGTAGATGCC 113804
Query 13997 CTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCA 14056
|| ||||||||||| |||| | ||||| ||| | | || | ||||| | |||||
Sbjct 113805 TTCCACTGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCA 113864
Query 14057 TTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14116
||||| || | || || || | | || ||| |||||||| ||||| || |
Sbjct 113865 GCGCAAGGCCCAATCTGCCTTCTTGTTGACACAAGGCATCGTTTCAATGGCATTGAAGAG 113924
Query 14117 ATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 14176
| ||||| | || || | | | ||||| || || ||||| | | ||||||||||||
Sbjct 113925 AAATTCCCTTTCATTGGGATCTTTTATGTAAGTGTCGATAAGGAGACCATACATTTCAGA 113984
Query 14177 GTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTAC 14236
|||||||||||||| || || || || ||||| || || | |||| | || |
Sbjct 113985 ATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGCCTTCTGTAATCTGAAG 114044
Query 14237 TTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14296
||| | ||||| || |||| |||||||| ||||| |||||||| ||||||| ||
Sbjct 114045 TTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAGGAA 114104
Query 14297 TGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAA 14356
|||| | || ||||||||| ||| ||| || || || ||| | ||
Sbjct 114105 AGCCAGAACGTGAGATATAAAGTATCTCTCCTCAGGCTTCAGGGATTCCCAGTGCCGTAT 114164
Query 14357 ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACAT 14416
||||| || || ||||| || ||| | |||| || ||| | || || |||| |||
Sbjct 114165 GTCCTTGGACAGGTCTACCTCCTCAGCGCTCCAGAAGGAGGCGTCCGCCTTCTTATGCAT 114224
>seq630
Length=879232
Score = 257 bits (284), Expect = 2e-63
Identities = 495/728 (68%), Gaps = 13/728 (2%)
Strand=Plus/Plus
Query 13572 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13631
|| ||||| | | || |||| ||||| || |||||||||||| | || |||||||||
Sbjct 417528 ACTCCCATCCTCTAATGCTCACCTACTCTCTTCTCAAAGAAGTTAATCTTTCCTTCCAGT 417587
Query 13632 GATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGT 13691
| ||||| |||||||| ||||||||||| | | || || || | |||| |||
Sbjct 417588 GGAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGT 417647
Query 13692 TCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATA 13751
|| | | | ||| || || | ||||||||| ||||| ||||| | ||||||||
Sbjct 417648 TCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATC 417707
Query 13752 CCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCT 13811
|| || || || ||||| | || | || | || || | |||||| ||||| |
Sbjct 417708 CCAATGAGCTTCACAGGCAAGATCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCAT-- 417765
Query 13812 TTTATAATAATTG-TAATAATCTCA--TTAGAAGGAGGATATTTTAGATGTTTAAAAATT 13868
| ||||| ||| | | || | | || || | | ||| |||| || ||
Sbjct 417766 -TGATAATTATTTCTCTTTCTCCCGGCTCTGATGGTTTGTGTACTAGGTGTTGGAACATC 417824
Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928
| || ||||||||||| || | ||||||||||| |||| |||||| || ||||||||
Sbjct 417825 AGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAAAAAGTTCATTAGAAAATGTG 417884
Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAG 13988
| || ||||||| ||||||||| || | ||| ||||| | ||| || || || ||||||
Sbjct 417885 AGGCCAGGCATCAGTCCTCGTTTCTTAAGCCAGAATATGGAAGCTAAAGAACCAGAAAAG 417944
Query 13989 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14048
|| | || || ||||||||||| || |||| ||| | | || | ||||| |
Sbjct 417945 AAGACGCCTTCCACTGCAGCAAAGGC-------AGTTCACCATAGGTAGCCTCTTTGTCC 417997
Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108
||||| |||| || | || || || | | || ||| |||||||| |||
Sbjct 417998 CCAATCCAGCGCAAGGCCCGGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCA 418057
Query 14109 TTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14168
|| || | | ||||| | || | | | | || || || ||| |||| | ||||||
Sbjct 418058 TTGAAGAGAAATTCCCTTTCGCTGGGATCTTTTATATACGTGTCAGTAAGGAGACTATAC 418117
Query 14169 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGAC 14228
|||||||| |||||||| ||||| | || || || ||||| || || | || || |
Sbjct 418118 ATTTCAGAATGTATGTTGTCCATGCCAATTTGGAATCCATAGAAACAGCGGGCCTCTGTA 418177
Query 14229 CATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCT 14288
|| ||||| | ||||| || |||| |||||||| ||||| || ||||| |||
Sbjct 418178 ATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCGTCACTTGCT 418237
Query 14289 GCAAAAAA 14296
||||| ||
Sbjct 418238 GCAAAGAA 418245
>seq867
Length=266704
Score = 125 bits (138), Expect = 7e-24
Identities = 177/246 (72%), Gaps = 2/246 (1%)
Strand=Plus/Minus
Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582
|| || ||| |||| || | |||| ||| || | || | | || || || ||||| |
Sbjct 180929 TAGAAGTCAGCATCCAAGGTAAAATAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 180871
Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642
||||| |||| ||||| ||||||||||||||||| || ||||||||||| ||||| ||
Sbjct 180870 CTGATACTCACCTACTCTCTTTTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 180811
Query 13643 CATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 13702
|||||| ||||||||||| | | || || || | |||| ||| | | |
Sbjct 180810 CATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCGATTCCAGCATAAG 180751
Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762
|||||| || | ||||||||| ||||| ||||| | |||||||| || || || ||
Sbjct 180750 TCTATCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATTCCGATGAGCTT 180691
Query 13763 TACAGG 13768
|||||
Sbjct 180690 CACAGG 180685
>seq2
Length=18007423
Score = 120 bits (132), Expect = 3e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953
|||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| |
Sbjct 1941489 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 1941430
Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013
| | ||| ||||| | ||||| || || |||||||| || || || ||||||||||| |
Sbjct 1941429 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCAAAGG 1941370
Query 14014 CTATTAATCGTTCTCC 14029
||| | ||||| ||
Sbjct 1941369 CTACGACACGTTCACC 1941354
Score = 98.7 bits (108), Expect = 1e-15
Identities = 106/138 (77%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582
|| || ||| |||| || | |||| ||| || | || | | || || || ||||| |
Sbjct 1943292 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 1943234
Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642
||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| ||
Sbjct 1943233 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 1943174
Query 13643 CATAAAATCAAATGGATT 13660
|||||| |||||||||||
Sbjct 1943173 CATAAAGTCAAATGGATT 1943156
Score = 82.4 bits (90), Expect = 7e-11
Identities = 68/83 (82%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201
||||| || |||||||| | |||||||||||||| |||||||||||||| || || ||
Sbjct 1939014 ATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 1938955
Query 14202 AAACCATAAAAGCATCTAGCTTC 14224
|||||||| || || | |||||
Sbjct 1938954 AAACCATAGAAACAGCGGGCTTC 1938932
>seq494
Length=1524325
Score = 100 bits (110), Expect = 3e-16
Identities = 220/325 (68%), Gaps = 6/325 (2%)
Strand=Plus/Minus
Query 13893 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 13952
||||||| || ||||||||||| ||| ||||||| | || | ||||| || | ||||
Sbjct 780065 CCCTCATAACTGCTAATAAGTTCATTTAAAAATGTGAGGCCAGACATCAGTCATGGTTTC 780006
Query 13953 tttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 14012
|| ||||| ||||| | ||||| || |||||| |||| | || || |||| |||||
Sbjct 780005 TTGAACCAGAATATCGATGCAAAAGAACCGGAAGAGAAGGTGCCTTCTACTGTGGCAAAG 779946
Query 14013 GCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCA 14072
||| | |||||||| | | | ||||||| ||||| ||||| |
Sbjct 779945 GCTGCAACACGTTCTCCGTGGGTAACATCTTTGTTCACAATCCAACACAAGGCCCAATTT 779886
Query 14073 GAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTC-CTTCTCTTT 14131
| | || || | | | ||| ||||||| ||||| || | | | || |||| ||||
Sbjct 779885 GCCTGCTTCTTGACACTAGGCATCCTTTCAATGGCATTGAAGAGAAACTCTCTTC-CTTT 779827
Query 14132 AGT-ACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCA 14190
| ||| || |||| ||| ||| | ||| ||| ||||| | ||||||||||
Sbjct 779826 GTTGTCTTTAA---CATGTGTCAGTAAAGATATTATCCATGTCAGAATAGATGTTTTCCA 779770
Query 14191 TAGCTATCTGAAAACCATAAAAGCA 14215
|||| || || || |||| |||||
Sbjct 779769 TAGCAATTTGGAAGCCATTGAAGCA 779745
Score = 84.2 bits (92), Expect = 2e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583
|| || ||| |||| || | |||| |||||| ||| | || || || |||| |||
Sbjct 779254 TAGAAGTCAGCATCCAAAGTAAAAGAATTATCTATTTTACTTGACATCACTGCCATCTTT 779313
Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643
|||||||||| ||||| || |||||||| ||| | || ||||||||||| || || |||
Sbjct 779314 TGATATTCACCTACTCTCTTCTCAAAGAACTTAATCTTTCCTTCCAGTGAAATGTTCTCC 779373
Query 13644 A 13644
|
Sbjct 779374 A 779374
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479685088330400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |