Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq526 289 3e-73 seq630 257 2e-63 seq867 125 7e-24 seq2 120 3e-22 seq494 100 3e-16 >seq526 Length=1402496 Score = 289 bits (320), Expect = 3e-73 Identities = 610/900 (68%), Gaps = 16/900 (2%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || |||||| || | || | |||| ||| || | || | | || || || ||||| | Sbjct 113334 TAGAAATCAGCACCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 113392 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 113393 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 113452 Query 13643 CATAAAATCAAATGGATT---TATTGACATAAACACTTTATCACAACCTAGTTCTAATAG 13699 |||||| ||||||||||| |||| | |||| ||| | | |||| ||||| | | Sbjct 113453 CATAAAGTCAAATGGATTCTCTATTCTGA-AAAC-CTTGCTAA-AACCCAGTTCCAGCAT 113509 Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759 ||| || || | ||||||||| ||||| ||||| | |||||||| || || || Sbjct 113510 G--TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAG 113567 Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819 | ||||| | | || | ||| |||| |||||| ||||| | | ||| | Sbjct 113568 CTCCACAGGCAAGGCCTCAGTAAGAAACTCTTGTTCTATCCGAACAGCAT---TGATAGT 113624 Query 13820 AATTGTAATAA---TCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGC 13876 ||| | | |||| | || || | | ||| ||||| || || | || || Sbjct 113625 TATTTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTAGGTGTTTGAACATCAGGCAAGC 113684 Query 13877 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 13936 ||||| | || | ||||||||||| |||| ||| || | |||||||| | || || Sbjct 113685 AAAATGTGAGTGTAAACCCTCATCTCTGCTAAAAAGGTCATGAGAAAATGTGAGGCCAGG 113744 Query 13937 CATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCC 13996 ||||| ||||| ||| || | ||| ||||| | ||||| || || |||||| | || || Sbjct 113745 CATCAGTCCTCATTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGTAGATGCC 113804 Query 13997 CTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCA 14056 || ||||||||||| |||| | ||||| ||| | | || | ||||| | ||||| Sbjct 113805 TTCCACTGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCA 113864 Query 14057 TTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14116 ||||| || | || || || | | || ||| |||||||| ||||| || | Sbjct 113865 GCGCAAGGCCCAATCTGCCTTCTTGTTGACACAAGGCATCGTTTCAATGGCATTGAAGAG 113924 Query 14117 ATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 14176 | ||||| | || || | | | ||||| || || ||||| | | |||||||||||| Sbjct 113925 AAATTCCCTTTCATTGGGATCTTTTATGTAAGTGTCGATAAGGAGACCATACATTTCAGA 113984 Query 14177 GTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTAC 14236 |||||||||||||| || || || || ||||| || || | |||| | || | Sbjct 113985 ATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGCCTTCTGTAATCTGAAG 114044 Query 14237 TTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14296 ||| | ||||| || |||| |||||||| ||||| |||||||| ||||||| || Sbjct 114045 TTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAGGAA 114104 Query 14297 TGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAA 14356 |||| | || ||||||||| ||| ||| || || || ||| | || Sbjct 114105 AGCCAGAACGTGAGATATAAAGTATCTCTCCTCAGGCTTCAGGGATTCCCAGTGCCGTAT 114164 Query 14357 ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACAT 14416 ||||| || || ||||| || ||| | |||| || ||| | || || |||| ||| Sbjct 114165 GTCCTTGGACAGGTCTACCTCCTCAGCGCTCCAGAAGGAGGCGTCCGCCTTCTTATGCAT 114224 >seq630 Length=879232 Score = 257 bits (284), Expect = 2e-63 Identities = 495/728 (68%), Gaps = 13/728 (2%) Strand=Plus/Plus Query 13572 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13631 || ||||| | | || |||| ||||| || |||||||||||| | || ||||||||| Sbjct 417528 ACTCCCATCCTCTAATGCTCACCTACTCTCTTCTCAAAGAAGTTAATCTTTCCTTCCAGT 417587 Query 13632 GATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGT 13691 | ||||| |||||||| ||||||||||| | | || || || | |||| ||| Sbjct 417588 GGAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGT 417647 Query 13692 TCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATA 13751 || | | | ||| || || | ||||||||| ||||| ||||| | |||||||| Sbjct 417648 TCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATC 417707 Query 13752 CCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCT 13811 || || || || ||||| | || | || | || || | |||||| ||||| | Sbjct 417708 CCAATGAGCTTCACAGGCAAGATCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCAT-- 417765 Query 13812 TTTATAATAATTG-TAATAATCTCA--TTAGAAGGAGGATATTTTAGATGTTTAAAAATT 13868 | ||||| ||| | | || | | || || | | ||| |||| || || Sbjct 417766 -TGATAATTATTTCTCTTTCTCCCGGCTCTGATGGTTTGTGTACTAGGTGTTGGAACATC 417824 Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 | || ||||||||||| || | ||||||||||| |||| |||||| || |||||||| Sbjct 417825 AGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAAAAAGTTCATTAGAAAATGTG 417884 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAG 13988 | || ||||||| ||||||||| || | ||| ||||| | ||| || || || |||||| Sbjct 417885 AGGCCAGGCATCAGTCCTCGTTTCTTAAGCCAGAATATGGAAGCTAAAGAACCAGAAAAG 417944 Query 13989 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14048 || | || || ||||||||||| || |||| ||| | | || | ||||| | Sbjct 417945 AAGACGCCTTCCACTGCAGCAAAGGC-------AGTTCACCATAGGTAGCCTCTTTGTCC 417997 Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 ||||| |||| || | || || || | | || ||| |||||||| ||| Sbjct 417998 CCAATCCAGCGCAAGGCCCGGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCA 418057 Query 14109 TTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14168 || || | | ||||| | || | | | | || || || ||| |||| | |||||| Sbjct 418058 TTGAAGAGAAATTCCCTTTCGCTGGGATCTTTTATATACGTGTCAGTAAGGAGACTATAC 418117 Query 14169 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGAC 14228 |||||||| |||||||| ||||| | || || || ||||| || || | || || | Sbjct 418118 ATTTCAGAATGTATGTTGTCCATGCCAATTTGGAATCCATAGAAACAGCGGGCCTCTGTA 418177 Query 14229 CATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCT 14288 || ||||| | ||||| || |||| |||||||| ||||| || ||||| ||| Sbjct 418178 ATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCGTCACTTGCT 418237 Query 14289 GCAAAAAA 14296 ||||| || Sbjct 418238 GCAAAGAA 418245 >seq867 Length=266704 Score = 125 bits (138), Expect = 7e-24 Identities = 177/246 (72%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 180929 TAGAAGTCAGCATCCAAGGTAAAATAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 180871 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| |||| ||||| ||||||||||||||||| || ||||||||||| ||||| || Sbjct 180870 CTGATACTCACCTACTCTCTTTTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 180811 Query 13643 CATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 13702 |||||| ||||||||||| | | || || || | |||| ||| | | | Sbjct 180810 CATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCGATTCCAGCATAAG 180751 Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762 |||||| || | ||||||||| ||||| ||||| | |||||||| || || || || Sbjct 180750 TCTATCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATTCCGATGAGCTT 180691 Query 13763 TACAGG 13768 ||||| Sbjct 180690 CACAGG 180685 >seq2 Length=18007423 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 1941489 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 1941430 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || || |||||||| || || || ||||||||||| | Sbjct 1941429 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCAAAGG 1941370 Query 14014 CTATTAATCGTTCTCC 14029 ||| | ||||| || Sbjct 1941369 CTACGACACGTTCACC 1941354 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 1943292 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 1943234 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 1943233 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 1943174 Query 13643 CATAAAATCAAATGGATT 13660 |||||| ||||||||||| Sbjct 1943173 CATAAAGTCAAATGGATT 1943156 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201 ||||| || |||||||| | |||||||||||||| |||||||||||||| || || || Sbjct 1939014 ATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 1938955 Query 14202 AAACCATAAAAGCATCTAGCTTC 14224 |||||||| || || | ||||| Sbjct 1938954 AAACCATAGAAACAGCGGGCTTC 1938932 >seq494 Length=1524325 Score = 100 bits (110), Expect = 3e-16 Identities = 220/325 (68%), Gaps = 6/325 (2%) Strand=Plus/Minus Query 13893 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 13952 ||||||| || ||||||||||| ||| ||||||| | || | ||||| || | |||| Sbjct 780065 CCCTCATAACTGCTAATAAGTTCATTTAAAAATGTGAGGCCAGACATCAGTCATGGTTTC 780006 Query 13953 tttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 14012 || ||||| ||||| | ||||| || |||||| |||| | || || |||| ||||| Sbjct 780005 TTGAACCAGAATATCGATGCAAAAGAACCGGAAGAGAAGGTGCCTTCTACTGTGGCAAAG 779946 Query 14013 GCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCA 14072 ||| | |||||||| | | | ||||||| ||||| ||||| | Sbjct 779945 GCTGCAACACGTTCTCCGTGGGTAACATCTTTGTTCACAATCCAACACAAGGCCCAATTT 779886 Query 14073 GAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTC-CTTCTCTTT 14131 | | || || | | | ||| ||||||| ||||| || | | | || |||| |||| Sbjct 779885 GCCTGCTTCTTGACACTAGGCATCCTTTCAATGGCATTGAAGAGAAACTCTCTTC-CTTT 779827 Query 14132 AGT-ACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCA 14190 | ||| || |||| ||| ||| | ||| ||| ||||| | |||||||||| Sbjct 779826 GTTGTCTTTAA---CATGTGTCAGTAAAGATATTATCCATGTCAGAATAGATGTTTTCCA 779770 Query 14191 TAGCTATCTGAAAACCATAAAAGCA 14215 |||| || || || |||| ||||| Sbjct 779769 TAGCAATTTGGAAGCCATTGAAGCA 779745 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 || || ||| |||| || | |||| |||||| ||| | || || || |||| ||| Sbjct 779254 TAGAAGTCAGCATCCAAAGTAAAAGAATTATCTATTTTACTTGACATCACTGCCATCTTT 779313 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 |||||||||| ||||| || |||||||| ||| | || ||||||||||| || || ||| Sbjct 779314 TGATATTCACCTACTCTCTTCTCAAAGAACTTAATCTTTCCTTCCAGTGAAATGTTCTCC 779373 Query 13644 A 13644 | Sbjct 779374 A 779374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479685088330400