Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq526 271 7e-68
seq630 244 1e-59
seq867 116 4e-21
seq2 114 1e-20
seq494 86.0 6e-12
seq518 82.4 7e-11
>seq526
Length=1402496
Score = 271 bits (300), Expect = 7e-68
Identities = 601/895 (67%), Gaps = 6/895 (1%)
Strand=Plus/Plus
Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370
|| |||||| || | || | |||| ||| || | || | | || || || ||||| |
Sbjct 113334 TAGAAATCAGCACCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 113392
Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430
||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| ||
Sbjct 113393 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 113452
Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490
|||||| || |||||||| | | || || || | |||| ||||| | |
Sbjct 113453 CATAAAGTCAAATGGATTCTCTATTCTGAAAACCTTGCTAAAACCCAGTTCCAGCATG-- 113510
Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550
||| || || | ||||||||| ||||| ||||| | |||||||| || || || |
Sbjct 113511 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTC 113570
Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA- 13609
||||| | | ||| | ||| |||| |||||| ||||| | | | | ||
Sbjct 113571 CACAGGCAAGGCCTCAGTAAGAAACTCTTGTTCTATCCGAACAGCATTGATAGTTATTTC 113630
Query 13610 TCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 13669
||||| | | || | || || | | ||| ||||| || || | || |||||||
Sbjct 113631 TCTTACTC-TCTCCTCTGATGGTTTGTGTACTAGGTGTTTGAACATCAGGCAAGCAAAAT 113689
Query 13670 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13729
| || | ||||||||||| |||| ||| || | |||||||| | || |||||||
Sbjct 113690 GTGAGTGTAAACCCTCATCTCTGCTAAAAAGGTCATGAGAAAATGTGAGGCCAGGCATCA 113749
Query 13730 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 13789
||||| ||| || | ||| ||||| | || || || || |||||| | || || || |
Sbjct 113750 GTCCTCATTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGTAGATGCCTTCCA 113809
Query 13790 CTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTC 13849
|||||||||| |||| | ||||| ||| | | || | ||||| |||||
Sbjct 113810 CTGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCA 113869
Query 13850 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTT 13909
||||| || | || || || | | || ||| ||||| || |||||||| | | ||
Sbjct 113870 AGGCCCAATCTGCCTTCTTGTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATT 113929
Query 13910 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 13969
|| | || || | | | ||||| || || ||||| | | |||||||||||| ||||
Sbjct 113930 CCCTTTCATTGGGATCTTTTATGTAAGTGTCGATAAGGAGACCATACATTTCAGAATGTA 113989
Query 13970 TGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCG 14029
||||||| || || || || || ||||| ||||| | |||||| || | ||
Sbjct 113990 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGCCTTCTGTAATCTGAAGTTCTT 114049
Query 14030 AGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCA 14089
| ||||| || ||||||||||||| || || |||||||| ||||||| || ||||
Sbjct 114050 GGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAGGAAAGCCA 114109
Query 14090 ATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCT 14149
| || ||||||||| ||| ||| || || || ||| | || ||||
Sbjct 114110 GAACGTGAGATATAAAGTATCTCTCCTCAGGCTTCAGGGATTCCCAGTGCCGTATGTCCT 114169
Query 14150 TAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACAT 14204
| || || ||||| || ||| | |||| || ||| | || || |||| |||
Sbjct 114170 TGGACAGGTCTACCTCCTCAGCGCTCCAGAAGGAGGCGTCCGCCTTCTTATGCAT 114224
>seq630
Length=879232
Score = 244 bits (270), Expect = 1e-59
Identities = 491/726 (68%), Gaps = 9/726 (1%)
Strand=Plus/Plus
Query 13360 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGT 13419
|| ||||| | | || |||| ||||| || ||||| |||||| | || |||||||||
Sbjct 417528 ACTCCCATCCTCTAATGCTCACCTACTCTCTTCTCAAAGAAGTTAATCTTTCCTTCCAGT 417587
Query 13420 GATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGT 13479
| ||||| |||||||| || |||||||| | | || || || | |||| |||
Sbjct 417588 GGAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGT 417647
Query 13480 TCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATA 13539
|| | | | ||| || || | ||||||||| ||||| ||||| | ||||||||
Sbjct 417648 TCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATC 417707
Query 13540 CCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCG 13599
|| || || || ||||| | || | ||| | || || | |||||| ||||| | |
Sbjct 417708 CCAATGAGCTTCACAGGCAAGATCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCATTG 417767
Query 13600 TTTATAATAA-TCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAA 13658
| || || |||| | | | | || || | | ||| |||| || || |
Sbjct 417768 ATAATTATTTCTCTTTCTCCCGGCTCT-GATGGTTTGTGTACTAGGTGTTGGAACATCAG 417826
Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718
|| ||||||||||| || | ||||||||||| |||| |||||| || |||||||| |
Sbjct 417827 GCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAAAAAGTTCATTAGAAAATGTGAG 417886
Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 13778
|| ||||||| ||||||||| || | ||| ||||| | ||| || || || ||||||||
Sbjct 417887 GCCAGGCATCAGTCCTCGTTTCTTAAGCCAGAATATGGAAGCTAAAGAACCAGAAAAGAA 417946
Query 13779 TATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGA 13838
| || || ||||||||||| || |||| ||| | | || | |||||
Sbjct 417947 GACGCCTTCCACTGCAGCAAAGGC-------AGTTCACCATAGGTAGCCTCTTTGTCCCC 417999
Query 13839 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898
||||| |||| || | || || || | | || ||| ||||| || |||||
Sbjct 418000 AATCCAGCGCAAGGCCCGGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATT 418059
Query 13899 GAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 13958
||| | | |||| | || | | | | || || || ||| |||| | ||||||||
Sbjct 418060 GAAGAGAAATTCCCTTTCGCTGGGATCTTTTATATACGTGTCAGTAAGGAGACTATACAT 418119
Query 13959 TTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14018
|||||| |||||||| || || | || || || ||||| ||||| | || ||||
Sbjct 418120 TTCAGAATGTATGTTGTCCATGCCAATTTGGAATCCATAGAAACAGCGGGCCTCTGTAAT 418179
Query 14019 TTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGC 14078
|| || || | ||||| || ||||||||||||| || || || ||||| |||||
Sbjct 418180 CTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCGTCACTTGCTGC 418239
Query 14079 AAAAAA 14084
||| ||
Sbjct 418240 AAAGAA 418245
>seq867
Length=266704
Score = 116 bits (128), Expect = 4e-21
Identities = 175/246 (71%), Gaps = 2/246 (1%)
Strand=Plus/Minus
Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370
|| || ||| |||| || | |||| ||| || | || | | || || || ||||| |
Sbjct 180929 TAGAAGTCAGCATCCAAGGTAAAATAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 180871
Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430
||||| |||| ||||| |||||||| |||||||| || ||||||||||| ||||| ||
Sbjct 180870 CTGATACTCACCTACTCTCTTTTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 180811
Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490
|||||| || |||||||| | | || || || | |||| ||| | | |
Sbjct 180810 CATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCGATTCCAGCATAAG 180751
Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550
|||||| || | ||||||||| ||||| ||||| | |||||||| || || || ||
Sbjct 180750 TCTATCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATTCCGATGAGCTT 180691
Query 13551 TACAGG 13556
|||||
Sbjct 180690 CACAGG 180685
>seq2
Length=18007423
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741
|||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| |
Sbjct 1941489 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 1941430
Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801
| | ||| ||||| | || || || || |||||||| || || || ||||||||||| |
Sbjct 1941429 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCAAAGG 1941370
Query 13802 CTATTAGTCGTTCTCC 13817
||| | ||||| ||
Sbjct 1941369 CTACGACACGTTCACC 1941354
Score = 89.7 bits (98), Expect = 5e-13
Identities = 104/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370
|| || ||| |||| || | |||| ||| || | || | | || || || ||||| |
Sbjct 1943292 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 1943234
Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430
||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| ||
Sbjct 1943233 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 1943174
Query 13431 CATAAAATCGAATGGATT 13448
|||||| || ||||||||
Sbjct 1943173 CATAAAGTCAAATGGATT 1943156
Score = 86.0 bits (94), Expect = 6e-12
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989
||||| || |||||||| | |||||||||||||| ||||||||||| || || || ||
Sbjct 1939014 ATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 1938955
Query 13990 AAACCATAAAAACATCTAGCTTCTG 14014
|||||||| ||||| | |||||||
Sbjct 1938954 AAACCATAGAAACAGCGGGCTTCTG 1938930
>seq494
Length=1524325
Score = 86.0 bits (94), Expect = 6e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 13681 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 13740
||||||| || ||||||||||| ||| ||||||| | || | ||||| || | ||||
Sbjct 780065 CCCTCATAACTGCTAATAAGTTCATTTAAAAATGTGAGGCCAGACATCAGTCATGGTTTC 780006
Query 13741 tttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 13800
|| ||||| ||||| | || || || |||||| |||| | || || |||| |||||
Sbjct 780005 TTGAACCAGAATATCGATGCAAAAGAACCGGAAGAGAAGGTGCCTTCTACTGTGGCAAAG 779946
Query 13801 GCTATTAGTCGTTCTCC 13817
||| | ||||||||
Sbjct 779945 GCTGCAACACGTTCTCC 779929
>seq518
Length=1471901
Score = 82.4 bits (90), Expect = 7e-11
Identities = 156/227 (69%), Gaps = 2/227 (1%)
Strand=Plus/Plus
Query 131353 AGAGTATAAACGAGATCCCAAAAAGATG-CATAATGGAACAATAGAGTACACAAGTATAG 131411
||| |||||| ||| ||||||| |||| ||| |||| || || || | ||| || || |
Sbjct 546106 AGAATATAAAGAAGACCCCAAAA-GATGTCATGATGGCACTATTGAATTCACGAGCATCG 546164
Query 131412 ATATGCATAAAGGTGTATCTCCGTCTAGGCGAGGAGATTTGGAAATTTTAGGATATTGTA 131471
|| || || || || | || || || || || ||||||||||| | || ||||| |
Sbjct 546165 ATGCACACAATGGCGTGGCCCCATCAAGACGTGGTGATTTGGAAATACTTGGTTATTGCA 546224
Query 131472 TAATAAAATGGTTAGGTGGTAAATTGCCATGGGAAGATGATTTAAAAAATTGTAAATATG 131531
| || | ||| | ||| | | || ||||| ||| |||| ||| || || |||||
Sbjct 546225 TGATCCAGTGGCTTACTGGCCATCTTCCTTGGGAGGATAATTTGAAAGATCCTAGATATG 546284
Query 131532 TAATGGAGTCAAAGATTAAATACATGAACGATATTGTAAATTTAATG 131578
| | || || || |||| ||| | | |||||| || ||| |||
Sbjct 546285 TTAGAGATTCCAAAATTAGATATAGAGAAAATATTGCAAGTTTGATG 546331
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478545990231840
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