Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq526 271 7e-68 seq630 244 1e-59 seq867 116 4e-21 seq2 114 1e-20 seq494 86.0 6e-12 seq518 82.4 7e-11 >seq526 Length=1402496 Score = 271 bits (300), Expect = 7e-68 Identities = 601/895 (67%), Gaps = 6/895 (1%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370 || |||||| || | || | |||| ||| || | || | | || || || ||||| | Sbjct 113334 TAGAAATCAGCACCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 113392 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| || Sbjct 113393 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 113452 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490 |||||| || |||||||| | | || || || | |||| ||||| | | Sbjct 113453 CATAAAGTCAAATGGATTCTCTATTCTGAAAACCTTGCTAAAACCCAGTTCCAGCATG-- 113510 Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550 ||| || || | ||||||||| ||||| ||||| | |||||||| || || || | Sbjct 113511 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTC 113570 Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA- 13609 ||||| | | ||| | ||| |||| |||||| ||||| | | | | || Sbjct 113571 CACAGGCAAGGCCTCAGTAAGAAACTCTTGTTCTATCCGAACAGCATTGATAGTTATTTC 113630 Query 13610 TCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 13669 ||||| | | || | || || | | ||| ||||| || || | || ||||||| Sbjct 113631 TCTTACTC-TCTCCTCTGATGGTTTGTGTACTAGGTGTTTGAACATCAGGCAAGCAAAAT 113689 Query 13670 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13729 | || | ||||||||||| |||| ||| || | |||||||| | || ||||||| Sbjct 113690 GTGAGTGTAAACCCTCATCTCTGCTAAAAAGGTCATGAGAAAATGTGAGGCCAGGCATCA 113749 Query 13730 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 13789 ||||| ||| || | ||| ||||| | || || || || |||||| | || || || | Sbjct 113750 GTCCTCATTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGTAGATGCCTTCCA 113809 Query 13790 CTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTC 13849 |||||||||| |||| | ||||| ||| | | || | ||||| ||||| Sbjct 113810 CTGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCA 113869 Query 13850 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTT 13909 ||||| || | || || || | | || ||| ||||| || |||||||| | | || Sbjct 113870 AGGCCCAATCTGCCTTCTTGTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATT 113929 Query 13910 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 13969 || | || || | | | ||||| || || ||||| | | |||||||||||| |||| Sbjct 113930 CCCTTTCATTGGGATCTTTTATGTAAGTGTCGATAAGGAGACCATACATTTCAGAATGTA 113989 Query 13970 TGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCG 14029 ||||||| || || || || || ||||| ||||| | |||||| || | || Sbjct 113990 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGCCTTCTGTAATCTGAAGTTCTT 114049 Query 14030 AGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCA 14089 | ||||| || ||||||||||||| || || |||||||| ||||||| || |||| Sbjct 114050 GGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAGGAAAGCCA 114109 Query 14090 ATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCT 14149 | || ||||||||| ||| ||| || || || ||| | || |||| Sbjct 114110 GAACGTGAGATATAAAGTATCTCTCCTCAGGCTTCAGGGATTCCCAGTGCCGTATGTCCT 114169 Query 14150 TAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACAT 14204 | || || ||||| || ||| | |||| || ||| | || || |||| ||| Sbjct 114170 TGGACAGGTCTACCTCCTCAGCGCTCCAGAAGGAGGCGTCCGCCTTCTTATGCAT 114224 >seq630 Length=879232 Score = 244 bits (270), Expect = 1e-59 Identities = 491/726 (68%), Gaps = 9/726 (1%) Strand=Plus/Plus Query 13360 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGT 13419 || ||||| | | || |||| ||||| || ||||| |||||| | || ||||||||| Sbjct 417528 ACTCCCATCCTCTAATGCTCACCTACTCTCTTCTCAAAGAAGTTAATCTTTCCTTCCAGT 417587 Query 13420 GATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGT 13479 | ||||| |||||||| || |||||||| | | || || || | |||| ||| Sbjct 417588 GGAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGT 417647 Query 13480 TCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATA 13539 || | | | ||| || || | ||||||||| ||||| ||||| | |||||||| Sbjct 417648 TCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATC 417707 Query 13540 CCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCG 13599 || || || || ||||| | || | ||| | || || | |||||| ||||| | | Sbjct 417708 CCAATGAGCTTCACAGGCAAGATCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCATTG 417767 Query 13600 TTTATAATAA-TCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAA 13658 | || || |||| | | | | || || | | ||| |||| || || | Sbjct 417768 ATAATTATTTCTCTTTCTCCCGGCTCT-GATGGTTTGTGTACTAGGTGTTGGAACATCAG 417826 Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 || ||||||||||| || | ||||||||||| |||| |||||| || |||||||| | Sbjct 417827 GCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAAAAAGTTCATTAGAAAATGTGAG 417886 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 13778 || ||||||| ||||||||| || | ||| ||||| | ||| || || || |||||||| Sbjct 417887 GCCAGGCATCAGTCCTCGTTTCTTAAGCCAGAATATGGAAGCTAAAGAACCAGAAAAGAA 417946 Query 13779 TATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGA 13838 | || || ||||||||||| || |||| ||| | | || | ||||| Sbjct 417947 GACGCCTTCCACTGCAGCAAAGGC-------AGTTCACCATAGGTAGCCTCTTTGTCCCC 417999 Query 13839 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898 ||||| |||| || | || || || | | || ||| ||||| || ||||| Sbjct 418000 AATCCAGCGCAAGGCCCGGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATT 418059 Query 13899 GAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 13958 ||| | | |||| | || | | | | || || || ||| |||| | |||||||| Sbjct 418060 GAAGAGAAATTCCCTTTCGCTGGGATCTTTTATATACGTGTCAGTAAGGAGACTATACAT 418119 Query 13959 TTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14018 |||||| |||||||| || || | || || || ||||| ||||| | || |||| Sbjct 418120 TTCAGAATGTATGTTGTCCATGCCAATTTGGAATCCATAGAAACAGCGGGCCTCTGTAAT 418179 Query 14019 TTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGC 14078 || || || | ||||| || ||||||||||||| || || || ||||| ||||| Sbjct 418180 CTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCGTCACTTGCTGC 418239 Query 14079 AAAAAA 14084 ||| || Sbjct 418240 AAAGAA 418245 >seq867 Length=266704 Score = 116 bits (128), Expect = 4e-21 Identities = 175/246 (71%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 180929 TAGAAGTCAGCATCCAAGGTAAAATAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 180871 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| |||| ||||| |||||||| |||||||| || ||||||||||| ||||| || Sbjct 180870 CTGATACTCACCTACTCTCTTTTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 180811 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490 |||||| || |||||||| | | || || || | |||| ||| | | | Sbjct 180810 CATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCGATTCCAGCATAAG 180751 Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550 |||||| || | ||||||||| ||||| ||||| | |||||||| || || || || Sbjct 180750 TCTATCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATTCCGATGAGCTT 180691 Query 13551 TACAGG 13556 ||||| Sbjct 180690 CACAGG 180685 >seq2 Length=18007423 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 1941489 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 1941430 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || || |||||||| || || || ||||||||||| | Sbjct 1941429 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCAAAGG 1941370 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | ||||| || Sbjct 1941369 CTACGACACGTTCACC 1941354 Score = 89.7 bits (98), Expect = 5e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 1943292 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 1943234 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| || Sbjct 1943233 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 1943174 Query 13431 CATAAAATCGAATGGATT 13448 |||||| || |||||||| Sbjct 1943173 CATAAAGTCAAATGGATT 1943156 Score = 86.0 bits (94), Expect = 6e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 ||||| || |||||||| | |||||||||||||| ||||||||||| || || || || Sbjct 1939014 ATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 1938955 Query 13990 AAACCATAAAAACATCTAGCTTCTG 14014 |||||||| ||||| | ||||||| Sbjct 1938954 AAACCATAGAAACAGCGGGCTTCTG 1938930 >seq494 Length=1524325 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 13681 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 13740 ||||||| || ||||||||||| ||| ||||||| | || | ||||| || | |||| Sbjct 780065 CCCTCATAACTGCTAATAAGTTCATTTAAAAATGTGAGGCCAGACATCAGTCATGGTTTC 780006 Query 13741 tttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 13800 || ||||| ||||| | || || || |||||| |||| | || || |||| ||||| Sbjct 780005 TTGAACCAGAATATCGATGCAAAAGAACCGGAAGAGAAGGTGCCTTCTACTGTGGCAAAG 779946 Query 13801 GCTATTAGTCGTTCTCC 13817 ||| | |||||||| Sbjct 779945 GCTGCAACACGTTCTCC 779929 >seq518 Length=1471901 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/227 (69%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 131353 AGAGTATAAACGAGATCCCAAAAAGATG-CATAATGGAACAATAGAGTACACAAGTATAG 131411 ||| |||||| ||| ||||||| |||| ||| |||| || || || | ||| || || | Sbjct 546106 AGAATATAAAGAAGACCCCAAAA-GATGTCATGATGGCACTATTGAATTCACGAGCATCG 546164 Query 131412 ATATGCATAAAGGTGTATCTCCGTCTAGGCGAGGAGATTTGGAAATTTTAGGATATTGTA 131471 || || || || || | || || || || || ||||||||||| | || ||||| | Sbjct 546165 ATGCACACAATGGCGTGGCCCCATCAAGACGTGGTGATTTGGAAATACTTGGTTATTGCA 546224 Query 131472 TAATAAAATGGTTAGGTGGTAAATTGCCATGGGAAGATGATTTAAAAAATTGTAAATATG 131531 | || | ||| | ||| | | || ||||| ||| |||| ||| || || ||||| Sbjct 546225 TGATCCAGTGGCTTACTGGCCATCTTCCTTGGGAGGATAATTTGAAAGATCCTAGATATG 546284 Query 131532 TAATGGAGTCAAAGATTAAATACATGAACGATATTGTAAATTTAATG 131578 | | || || || |||| ||| | | |||||| || ||| ||| Sbjct 546285 TTAGAGATTCCAAAATTAGATATAGAGAAAATATTGCAAGTTTGATG 546331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478545990231840