Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq599 156 6e-33
seq526 154 2e-32
seq630 125 1e-23
>seq599
Length=1005688
Score = 156 bits (172), Expect = 6e-33
Identities = 386/582 (66%), Gaps = 4/582 (1%)
Strand=Plus/Plus
Query 70046 GGCTTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCAC 70105
|| ||| ||| |||| |||| || || |||| ||||| || || ||||||||||||||
Sbjct 754111 GGATTCTCCGCCAGAGAAGAAGGGGACTTGGGCCCAGTTTATGGCTTCCAGTGGAGGCAT 754170
Query 70106 TCGGGCACCAAGTATGTAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTG 70165
| || | | || ||| || |||| ||||| || || || ||||| ||| |
Sbjct 754171 TTTGGGGCAGAATACAGAGATATGGATTCAGATTATTCAGGACAAGGAGTTGACCAACTA 754230
Query 70166 CAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCA 70225
|| | | | | |||||| |||| ||||| || || || || ||| | |||||| |
Sbjct 754231 CAAAGAGTGACTGACACCATCAAAACCAACCCTGATGACAGAAGAATCATCATGTGCGCT 754290
Query 70226 TGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCACTGT--TTGGCTCAGT 70283
|||||||| |||| | | | ||||| || || || || || || | || ||||
Sbjct 754291 TGGAATCCAAGAGATCTTCCTCTGATGGCGCTGCCTCCATGCCA-TGCCCTCTGC-CAGT 754348
Query 70284 TTTACTCGTACGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCC 70343
| ||| | |||| | |||| ||| || | ||||| | ||||||||||
Sbjct 754349 TCTACGAGGTGAATGGTGAGCTGTCCTGCCAGCTGCACCAGAGATCAGGAGACATGGGCC 754408
Query 70344 TCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTA 70403
| ||||| || || |||| || ||||| | || | ||| || |||| || ||||| |
Sbjct 754409 TAGGTGTGCCTTTCAACACCGCCAGCTACACCTTGCTCACGTACGTGATCGCGCACATCA 754468
Query 70404 CCGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATC 70463
| |||||||| | || || ||||| || | || || || || | || | ||||
Sbjct 754469 CGGGCCTGAAGCCAGGTGACTTTGTACATACTTTGGGAGATGCCCATATTTACCTGAATC 754528
Query 70464 ACATCGAGCCATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGT 70523
||||| ||||| | || | || || | || || || |||||||| || ||||| ||
Sbjct 754529 ACATCAAGCCACTGAAAATTCAGCTTCAGCGAGAACCCAGACCTTTCCCAAAGCTCAAGA 754588
Query 70524 TTGCTCGTAAAGTTGAAAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTT 70583
|| ||| ||||||| || ||||| || || ||||| |||| | |||| |
Sbjct 754589 TTCTTCGACAAGTTGAGAAAATTGATGACTTCAAAGCTGAAGACTTTAAGGTTGAAGGGT 754648
Query 70584 ACGATCCATACCCTAAGATTCCCATGGTTCTGGCTGTTTAGA 70625
| |||| | || | ||| |||| ||||||||||||
Sbjct 754649 GCAATCCGCATCCAACTATTAAAATGGAAATGGCTGTTTAGA 754690
>seq526
Length=1402496
Score = 154 bits (170), Expect = 2e-32
Identities = 571/880 (65%), Gaps = 30/880 (3%)
Strand=Plus/Minus
Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057
|| |||||| ||| || |||| ||| | ||| | || ||||| | |||||||| |||
Sbjct 114254 TTCCCCATCGAGTACCACAACATCTGGCAGATGCATAAGAAGGCGGACGCCTCCTTCTGG 114195
Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACG--ATTGGGAGACTCGTTTGACTG 125115
| | || ||||| || |||||||||||| | ||| | ||||| | | | |||
Sbjct 114194 AGCGCTGAGGAGGTAGACCTGTCCAAGGACAT--ACGGCACTGGGAATCCCTGAAGCCTG 114137
Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175
| ||| || | |||||||| ||| || |||| ||| |||| | ||||| || |
Sbjct 114136 AG---GAGAGATACTTTATATCTCACGTTCTGGCTTTCCTTGCAGCAAGTGATGGCATAG 114080
Query 125176 TCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCT 125235
| || || || || || ||||| ||||| | ||| |||| | | || |
Sbjct 114079 TAAATGAAAACTTGGTGGAGCGATTTAGCCAAGAACTTCAGATTACAGAAGGCTGCTGTT 114020
Query 125236 TTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTG 125295
| || || |||||||| || || ||| | || || |||||||| | || || |
Sbjct 114019 TCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATGGTCTCCTTATCG 113960
Query 125296 ACATGTACATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACGGTG 125354
||| ||||| ||||| ||| | || || ||||| || || || || ||| ||
Sbjct 113959 ACACTTACATAAAAGATCC-CAATGAAAGGGAATTTCTCTTCAATGCCATTGAAACGATG 113901
Query 125355 CCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCG 125414
|| | | | || ||||| | |||| | || ||||| | ||| | || || |
Sbjct 113900 CCTTGTGTCAACAAGAAGGCAGATTGGGCCTTGCGCTGGATTGGGGACAAAGAGGCTACC 113841
Query 125415 TACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTT 125474
|| | || | | || || || || || || || ||||||| |||||| ||| ||||
Sbjct 113840 TATGGTGAACGCGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTACTTTTCTGGTTCTTTT 113781
Query 125475 GCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGA- 125533
|| |||| || ||||||||||| | ||||| ||||| || || || | | ||
Sbjct 113780 GCATCCATATTCTGGCTCAAGAAATGAGGACTGATGCCTGGCCTCACATTTTCTCATGAC 113721
Query 125534 GTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTA 125593
||| || | |||| ||||| |||||| | ||||| || |||| ||| |
Sbjct 113720 CTTTTTAGC-AGAGATGAGGGTTTACACTCACATTTTGCTTGCCTGATGTT---CAAACA 113665
Query 125594 TCTGCGTCCCGAGTGCA-GATCCAGC-GATGAAAAGGTCATCAACATTGTAACCGATGCC 125651
|| ||| || | ||| | || || | || | | || | | ||||
Sbjct 113664 --------CCTAGTACACAAACCATCAGAGGAGAGAGTAAGAGAAATAACTATCAATGCT 113613
Query 125652 GTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGT-CAGCATGATTGGCATGAA 125710
|| ||||||||||||||||||| || || || | || || ||| | ||||| |||||
Sbjct 113612 GTTCGGATAGAACAAGAGTTTCTTACTGAGGCCTTGCCTGTGGAGC-TCATTGGGATGAA 113554
Query 125711 CTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTC-TACTGTACGAGTTGA 125769
|||| |||||| | ||||| |||||||||||||| | | | ||| || ||
Sbjct 113553 TTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGACATGCTG---GAACTGG 113497
Query 125770 TTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAG 125829
| ||||| ||| || ||||||| ||||| || ||| | || ||||| |
Sbjct 113496 GTTTTAGCAAGGTTTTCAGAATAGAGAATCCATTTGACTTTATGGAGAATATTTCACTGG 113437
Query 125830 AGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869
| || ||||| ||||| || ||||||| || |||||||
Sbjct 113436 AAGGAAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTA 113397
>seq630
Length=879232
Score = 125 bits (138), Expect = 1e-23
Identities = 529/820 (65%), Gaps = 33/820 (4%)
Strand=Plus/Minus
Query 125044 AGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGA 125103
|||||||||||||||| | ||||||||| || | |||||||||| | | |||||
Sbjct 418349 AGGCCTCCTTTTGGACCGCCGAAGAGGTGGACCCGTCCAAGGACATTCGGCACTGGGAAT 418290
Query 125104 CTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCT 125163
| | | | || ||| || | |||||||| ||| || || |||||||| |
Sbjct 418289 CCCTGAAGCCCGAG---GAGAGACACTTTATATCCCACGTTCTGAGTTTCTTTGCAGCAA 418233
Query 125164 CCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGA-GTTGACCATTCCA 125222
|| || || || || || || || || ||||| ||||| ||| | ||| ||
Sbjct 418232 GTGACGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAG-ATTACA 418174
Query 125223 GAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTAC 125282
|||| || || || ||||||||||| || || ||| | || || ||||||||
Sbjct 418173 GAGGCCCGCTGTTTCTATGGATTCCAAATTGGCATGGACAACATACATTCTGAAATGTAT 418114
Query 125283 TCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAA-ACACATGCTCTTTAACGC 125341
| || | ||||| ||| || ||||| || || || | | ||||| || ||
Sbjct 418113 AGTCTCCTTACTGACACGTATATAAAAGATCC-CAGCGAAAGGGAATTTCTCTTCAATGC 418055
Query 125342 AATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGA 125401
|| || ||| |||| | | | || ||||| | ||| | || ||||| | ||
Sbjct 418054 CATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGACCGGGCCTTGCGCTGGATTGGGGA 417995
Query 125402 CGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTT 125461
| | || || | || | || ||| || || || || || || ||| |||||||
Sbjct 417994 CAAAGAGGCTACCTATGGTGA---ACT----GCCTTTGCTGCAGTGGAAGGCGTCTTCTT 417942
Query 125462 TTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521
||| ||| ||| || |||| || ||||| ||||| || ||||| ||||| || || ||
Sbjct 417941 TTCTGGTTCTTTAGCTTCCATATTCTGGCTTAAGAAACGAGGACTGATGCCTGGCCTCAC 417882
Query 125522 GCACAGTAACG-AGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTAC 125580
||| | | ||| || | |||| ||||| |||||||||| ||||| ||
Sbjct 417881 ATTTTCTAATGAACTTTTTAGC-AGAGATGAGGGTTTACACTGTGATTTTGCTTGCCTGA 417823
Query 125581 TGTTTCGCAACTATCTGCGTCCCGA--GTGCAGATCCAGCGATGAAAAGGTCATCAACAT 125638
|||| |||| | || | | | |||| || | || || || | ||
Sbjct 417822 TGTT--CCAAC-ACCTAGTACACAAACCATCAGAGCC-GGGAGAAAGAG-------AAAT 417774
Query 125639 TGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCAT 125698
| | | |||| || |||||||||| ||||| || || || | | || || | |
Sbjct 417773 AATTATCAATGCTGTTCGGATAGAACAGGAGTTCCTCACTGAGATCTTGCCTGTGAAGCT 417714
Query 125699 GATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACT 125758
||||| ||||| |||| |||||| | ||||| |||||||||||||| | || |
Sbjct 417713 CATTGGGATGAATTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGACTTAT 417654
Query 125759 GTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAG 125818
| || || | ||||| ||| || | ||||||| ||||| || ||| ||
Sbjct 417653 GCTGGAACTGGGTTTTAGCAAGGTTTTCAGAGTAGAGAATCCATTTGACTTTATG--GAG 417596
Query 125819 CATAT--CACTAGAGGGTAAGACCAACTTTTTCGAGAAGA 125856
|||| |||| || || |||| ||||| || |||||||
Sbjct 417595 AATATTCCACTGGAAGGAAAGATTAACTTCTTTGAGAAGA 417556
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740992912254560
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