Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq599 156 6e-33 seq526 154 2e-32 seq630 125 1e-23 >seq599 Length=1005688 Score = 156 bits (172), Expect = 6e-33 Identities = 386/582 (66%), Gaps = 4/582 (1%) Strand=Plus/Plus Query 70046 GGCTTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCAC 70105 || ||| ||| |||| |||| || || |||| ||||| || || |||||||||||||| Sbjct 754111 GGATTCTCCGCCAGAGAAGAAGGGGACTTGGGCCCAGTTTATGGCTTCCAGTGGAGGCAT 754170 Query 70106 TCGGGCACCAAGTATGTAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTG 70165 | || | | || ||| || |||| ||||| || || || ||||| ||| | Sbjct 754171 TTTGGGGCAGAATACAGAGATATGGATTCAGATTATTCAGGACAAGGAGTTGACCAACTA 754230 Query 70166 CAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCA 70225 || | | | | |||||| |||| ||||| || || || || ||| | |||||| | Sbjct 754231 CAAAGAGTGACTGACACCATCAAAACCAACCCTGATGACAGAAGAATCATCATGTGCGCT 754290 Query 70226 TGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCACTGT--TTGGCTCAGT 70283 |||||||| |||| | | | ||||| || || || || || || | || |||| Sbjct 754291 TGGAATCCAAGAGATCTTCCTCTGATGGCGCTGCCTCCATGCCA-TGCCCTCTGC-CAGT 754348 Query 70284 TTTACTCGTACGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCC 70343 | ||| | |||| | |||| ||| || | ||||| | |||||||||| Sbjct 754349 TCTACGAGGTGAATGGTGAGCTGTCCTGCCAGCTGCACCAGAGATCAGGAGACATGGGCC 754408 Query 70344 TCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTA 70403 | ||||| || || |||| || ||||| | || | ||| || |||| || ||||| | Sbjct 754409 TAGGTGTGCCTTTCAACACCGCCAGCTACACCTTGCTCACGTACGTGATCGCGCACATCA 754468 Query 70404 CCGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATC 70463 | |||||||| | || || ||||| || | || || || || | || | |||| Sbjct 754469 CGGGCCTGAAGCCAGGTGACTTTGTACATACTTTGGGAGATGCCCATATTTACCTGAATC 754528 Query 70464 ACATCGAGCCATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGT 70523 ||||| ||||| | || | || || | || || || |||||||| || ||||| || Sbjct 754529 ACATCAAGCCACTGAAAATTCAGCTTCAGCGAGAACCCAGACCTTTCCCAAAGCTCAAGA 754588 Query 70524 TTGCTCGTAAAGTTGAAAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTT 70583 || ||| ||||||| || ||||| || || ||||| |||| | |||| | Sbjct 754589 TTCTTCGACAAGTTGAGAAAATTGATGACTTCAAAGCTGAAGACTTTAAGGTTGAAGGGT 754648 Query 70584 ACGATCCATACCCTAAGATTCCCATGGTTCTGGCTGTTTAGA 70625 | |||| | || | ||| |||| |||||||||||| Sbjct 754649 GCAATCCGCATCCAACTATTAAAATGGAAATGGCTGTTTAGA 754690 >seq526 Length=1402496 Score = 154 bits (170), Expect = 2e-32 Identities = 571/880 (65%), Gaps = 30/880 (3%) Strand=Plus/Minus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 || |||||| ||| || |||| ||| | ||| | || ||||| | |||||||| ||| Sbjct 114254 TTCCCCATCGAGTACCACAACATCTGGCAGATGCATAAGAAGGCGGACGCCTCCTTCTGG 114195 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACG--ATTGGGAGACTCGTTTGACTG 125115 | | || ||||| || |||||||||||| | ||| | ||||| | | | ||| Sbjct 114194 AGCGCTGAGGAGGTAGACCTGTCCAAGGACAT--ACGGCACTGGGAATCCCTGAAGCCTG 114137 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | ||| || | |||||||| ||| || |||| ||| |||| | ||||| || | Sbjct 114136 AG---GAGAGATACTTTATATCTCACGTTCTGGCTTTCCTTGCAGCAAGTGATGGCATAG 114080 Query 125176 TCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCT 125235 | || || || || || ||||| ||||| | ||| |||| | | || | Sbjct 114079 TAAATGAAAACTTGGTGGAGCGATTTAGCCAAGAACTTCAGATTACAGAAGGCTGCTGTT 114020 Query 125236 TTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTG 125295 | || || |||||||| || || ||| | || || |||||||| | || || | Sbjct 114019 TCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATGGTCTCCTTATCG 113960 Query 125296 ACATGTACATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACGGTG 125354 ||| ||||| ||||| ||| | || || ||||| || || || || ||| || Sbjct 113959 ACACTTACATAAAAGATCC-CAATGAAAGGGAATTTCTCTTCAATGCCATTGAAACGATG 113901 Query 125355 CCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCG 125414 || | | | || ||||| | |||| | || ||||| | ||| | || || | Sbjct 113900 CCTTGTGTCAACAAGAAGGCAGATTGGGCCTTGCGCTGGATTGGGGACAAAGAGGCTACC 113841 Query 125415 TACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTT 125474 || | || | | || || || || || || || ||||||| |||||| ||| |||| Sbjct 113840 TATGGTGAACGCGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTACTTTTCTGGTTCTTTT 113781 Query 125475 GCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGA- 125533 || |||| || ||||||||||| | ||||| ||||| || || || | | || Sbjct 113780 GCATCCATATTCTGGCTCAAGAAATGAGGACTGATGCCTGGCCTCACATTTTCTCATGAC 113721 Query 125534 GTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTA 125593 ||| || | |||| ||||| |||||| | ||||| || |||| ||| | Sbjct 113720 CTTTTTAGC-AGAGATGAGGGTTTACACTCACATTTTGCTTGCCTGATGTT---CAAACA 113665 Query 125594 TCTGCGTCCCGAGTGCA-GATCCAGC-GATGAAAAGGTCATCAACATTGTAACCGATGCC 125651 || ||| || | ||| | || || | || | | || | | |||| Sbjct 113664 --------CCTAGTACACAAACCATCAGAGGAGAGAGTAAGAGAAATAACTATCAATGCT 113613 Query 125652 GTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGT-CAGCATGATTGGCATGAA 125710 || ||||||||||||||||||| || || || | || || ||| | ||||| ||||| Sbjct 113612 GTTCGGATAGAACAAGAGTTTCTTACTGAGGCCTTGCCTGTGGAGC-TCATTGGGATGAA 113554 Query 125711 CTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTC-TACTGTACGAGTTGA 125769 |||| |||||| | ||||| |||||||||||||| | | | ||| || || Sbjct 113553 TTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGACATGCTG---GAACTGG 113497 Query 125770 TTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAG 125829 | ||||| ||| || ||||||| ||||| || ||| | || ||||| | Sbjct 113496 GTTTTAGCAAGGTTTTCAGAATAGAGAATCCATTTGACTTTATGGAGAATATTTCACTGG 113437 Query 125830 AGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 | || ||||| ||||| || ||||||| || ||||||| Sbjct 113436 AAGGAAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTA 113397 >seq630 Length=879232 Score = 125 bits (138), Expect = 1e-23 Identities = 529/820 (65%), Gaps = 33/820 (4%) Strand=Plus/Minus Query 125044 AGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGA 125103 |||||||||||||||| | ||||||||| || | |||||||||| | | ||||| Sbjct 418349 AGGCCTCCTTTTGGACCGCCGAAGAGGTGGACCCGTCCAAGGACATTCGGCACTGGGAAT 418290 Query 125104 CTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCT 125163 | | | | || ||| || | |||||||| ||| || || |||||||| | Sbjct 418289 CCCTGAAGCCCGAG---GAGAGACACTTTATATCCCACGTTCTGAGTTTCTTTGCAGCAA 418233 Query 125164 CCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGA-GTTGACCATTCCA 125222 || || || || || || || || || ||||| ||||| ||| | ||| || Sbjct 418232 GTGACGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAG-ATTACA 418174 Query 125223 GAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTAC 125282 |||| || || || ||||||||||| || || ||| | || || |||||||| Sbjct 418173 GAGGCCCGCTGTTTCTATGGATTCCAAATTGGCATGGACAACATACATTCTGAAATGTAT 418114 Query 125283 TCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAA-ACACATGCTCTTTAACGC 125341 | || | ||||| ||| || ||||| || || || | | ||||| || || Sbjct 418113 AGTCTCCTTACTGACACGTATATAAAAGATCC-CAGCGAAAGGGAATTTCTCTTCAATGC 418055 Query 125342 AATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGA 125401 || || ||| |||| | | | || ||||| | ||| | || ||||| | || Sbjct 418054 CATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGACCGGGCCTTGCGCTGGATTGGGGA 417995 Query 125402 CGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTT 125461 | | || || | || | || ||| || || || || || || ||| ||||||| Sbjct 417994 CAAAGAGGCTACCTATGGTGA---ACT----GCCTTTGCTGCAGTGGAAGGCGTCTTCTT 417942 Query 125462 TTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 ||| ||| ||| || |||| || ||||| ||||| || ||||| ||||| || || || Sbjct 417941 TTCTGGTTCTTTAGCTTCCATATTCTGGCTTAAGAAACGAGGACTGATGCCTGGCCTCAC 417882 Query 125522 GCACAGTAACG-AGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTAC 125580 ||| | | ||| || | |||| ||||| |||||||||| ||||| || Sbjct 417881 ATTTTCTAATGAACTTTTTAGC-AGAGATGAGGGTTTACACTGTGATTTTGCTTGCCTGA 417823 Query 125581 TGTTTCGCAACTATCTGCGTCCCGA--GTGCAGATCCAGCGATGAAAAGGTCATCAACAT 125638 |||| |||| | || | | | |||| || | || || || | || Sbjct 417822 TGTT--CCAAC-ACCTAGTACACAAACCATCAGAGCC-GGGAGAAAGAG-------AAAT 417774 Query 125639 TGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCAT 125698 | | | |||| || |||||||||| ||||| || || || | | || || | | Sbjct 417773 AATTATCAATGCTGTTCGGATAGAACAGGAGTTCCTCACTGAGATCTTGCCTGTGAAGCT 417714 Query 125699 GATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACT 125758 ||||| ||||| |||| |||||| | ||||| |||||||||||||| | || | Sbjct 417713 CATTGGGATGAATTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGACTTAT 417654 Query 125759 GTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAG 125818 | || || | ||||| ||| || | ||||||| ||||| || ||| || Sbjct 417653 GCTGGAACTGGGTTTTAGCAAGGTTTTCAGAGTAGAGAATCCATTTGACTTTATG--GAG 417596 Query 125819 CATAT--CACTAGAGGGTAAGACCAACTTTTTCGAGAAGA 125856 |||| |||| || || |||| ||||| || ||||||| Sbjct 417595 AATATTCCACTGGAAGGAAAGATTAACTTCTTTGAGAAGA 417556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740992912254560