Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq72 102 6e-17
seq290 95.1 9e-15
seq4 95.1 9e-15
seq573 91.5 1e-13
seq434 91.5 1e-13
seq142 86.0 5e-12
seq19 82.4 6e-11
seq3 82.4 6e-11
>seq72
Length=7750101
Score = 102 bits (112), Expect = 6e-17
Identities = 157/223 (70%), Gaps = 1/223 (0%)
Strand=Plus/Plus
Query 15145 CAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCT 15204
|| ||| || || | |||||| || || || || || |||||||| || || | | |
Sbjct 2355984 CAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGATAAAGTGCG 2356043
Query 15205 CGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTC 15264
| ||||| | | |||||||| | |||| | ||| || || |||||||||||
Sbjct 2356044 TCCATCTTCCAGTGTCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTC 2356103
Query 15265 TTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGT 15324
|| || |||||| ||||||| ||||||| ||||| ||| || || | |||
Sbjct 2356104 CTTATCCTGGATTTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGT 2356163
Query 15325 AATGGT-TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
|||||| ||| || || |||||||| |||||||| ||||| ||
Sbjct 2356164 AATGGTCTTTCCCCGTAAGAGTTTTCACAAAAATCTGCATTTT 2356206
>seq290
Length=2922102
Score = 95.1 bits (104), Expect = 9e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| | | ||| || || | |||||| | || || ||||| |||||||| ||
Sbjct 1757541 CCACCACGAAGTCTCAACACAAGATGAAGAATAGACTCCTTTTGAATGTTGTAGTCAGAC 1757600
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | | | | ||||| | ||| |||||||| | |||| | ||| || || |||
Sbjct 1757601 AAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTTTGCTGATCACAAGGA 1757660
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
||||||||||| || || ||| ||||||| ||||||| ||||| | ||| |
Sbjct 1757661 ATTCCTTCTTTATCCTGGATCTTGGACTTTACATTTTCTATCGTATCCGAAGGTTCAGCC 1757720
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| | ||| ||||| || || | || ||||| |||||||| |||||
Sbjct 1757721 TCGAGGGTGATGGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCAT 1757767
>seq4
Length=15321207
Score = 95.1 bits (104), Expect = 9e-15
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| | ||||| || || | |||||| || || || || || |||||||| ||
Sbjct 5243222 CCACCACGAAATCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 5243163
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | | | | ||||| | ||| |||||||| | |||| | ||| || || |||
Sbjct 5243162 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 5243103
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|||||||| || || |||||| ||||||| ||||||| || || ||| ||
Sbjct 5243102 ATTCCTTCCTTATCCTGGATTTTGGCCTTTACATTTTCTATCGTTTCCGAGGGTTCAACC 5243043
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
|| | ||| ||||| || || || || ||||| || ||||| ||||| ||
Sbjct 5243042 TCGAGGGTTATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 5242993
>seq573
Length=1150292
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| | | ||| || || | |||||| || || || || || |||||||| ||
Sbjct 200470 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 200529
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | | | | ||||| | ||| |||||||| | |||| | ||| || || |||
Sbjct 200530 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 200589
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|||||||| || || || ||| ||||||| ||||||| ||||| ||| ||
Sbjct 200590 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 200649
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
|| | ||| ||||| || || || || ||||| || ||||| ||||| ||
Sbjct 200650 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 200699
>seq434
Length=1819716
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| | | ||| || || | |||||| || || || || || ||||| || ||
Sbjct 1331282 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTATAGTCAGAC 1331341
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | | | | ||||| | ||| |||||||| | |||| | ||| || || |||
Sbjct 1331342 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 1331401
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|||||||| || || || ||| ||||||| ||||||| ||||| ||| ||
Sbjct 1331402 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 1331461
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
|| | ||| ||||| || ||||| || ||||| || ||||| ||||| ||
Sbjct 1331462 TCGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTTT 1331511
>seq142
Length=5139840
Score = 86.0 bits (94), Expect = 5e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| | | ||| || || | |||||| || || || |||| |||||||| ||
Sbjct 3725168 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCCTTTGAATGTTGTAGTCAAAC 3725227
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | | | |||||| | ||| |||||||| | |||| | ||| || | |||
Sbjct 3725228 AAAGTACGTCTGTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCCTTGCTGACCAGGAGGA 3725287
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|||||||| || || || ||| ||||||| ||||||| ||||| ||| ||
Sbjct 3725288 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 3725347
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
|| | | | ||||| || ||||| || ||||| || ||||| ||||| ||
Sbjct 3725348 TCGAGGTTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTTT 3725397
>seq19
Length=20362211
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| | | ||| || || | |||||| || | || ||||| |||||||| ||
Sbjct 6160571 CCACCACAAAGTCTCAACACAAGATGAAGAGTAAACTCCTTTTGAATGTTGTAGTCAGAC 6160512
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | | | ||||||| | ||| |||||||| | |||| | ||| || || |||
Sbjct 6160511 AAAGTACGTCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 6160452
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
||||||||||| || || ||| ||||||| ||||||| |||| |||| |
Sbjct 6160451 ATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATTATATCCGAGGTTTCAAAC 6160392
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
|| | ||| ||||| | | | || ||||| | |||||| ||||| ||
Sbjct 6160391 TCAAGGGTGATGGTCTCCCTCATAAGGGTTTTCAGAAAAATCTGCATTTT 6160342
>seq3
Length=16812482
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| | | ||| | || | |||||| || || || || || |||||||| ||
Sbjct 14706844 CCACCACGAAGTCTCAGCACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 14706903
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | | | | ||||| | ||| |||||||| | |||| | ||| || || |||
Sbjct 14706904 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 14706963
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|||||||| || || || ||| ||||||| ||||||| |||| ||| ||
Sbjct 14706964 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCTGAGGGTTCAACC 14707023
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
|| | ||| ||||| || || || || ||||| || ||||| ||||| ||
Sbjct 14707024 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 14707073
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362147612993796
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |