Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq72 102 6e-17 seq290 95.1 9e-15 seq4 95.1 9e-15 seq573 91.5 1e-13 seq434 91.5 1e-13 seq142 86.0 5e-12 seq19 82.4 6e-11 seq3 82.4 6e-11 >seq72 Length=7750101 Score = 102 bits (112), Expect = 6e-17 Identities = 157/223 (70%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 15145 CAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCT 15204 || ||| || || | |||||| || || || || || |||||||| || || | | | Sbjct 2355984 CAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGATAAAGTGCG 2356043 Query 15205 CGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTC 15264 | ||||| | | |||||||| | |||| | ||| || || ||||||||||| Sbjct 2356044 TCCATCTTCCAGTGTCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTC 2356103 Query 15265 TTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGT 15324 || || |||||| ||||||| ||||||| ||||| ||| || || | ||| Sbjct 2356104 CTTATCCTGGATTTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGT 2356163 Query 15325 AATGGT-TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 |||||| ||| || || |||||||| |||||||| ||||| || Sbjct 2356164 AATGGTCTTTCCCCGTAAGAGTTTTCACAAAAATCTGCATTTT 2356206 >seq290 Length=2922102 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || || | |||||| | || || ||||| |||||||| || Sbjct 1757541 CCACCACGAAGTCTCAACACAAGATGAAGAATAGACTCCTTTTGAATGTTGTAGTCAGAC 1757600 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| | ||| |||||||| | |||| | ||| || || ||| Sbjct 1757601 AAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTTTGCTGATCACAAGGA 1757660 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||||||||| || || ||| ||||||| ||||||| ||||| | ||| | Sbjct 1757661 ATTCCTTCTTTATCCTGGATCTTGGACTTTACATTTTCTATCGTATCCGAAGGTTCAGCC 1757720 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||| || || | || ||||| |||||||| ||||| Sbjct 1757721 TCGAGGGTGATGGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCAT 1757767 >seq4 Length=15321207 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | ||||| || || | |||||| || || || || || |||||||| || Sbjct 5243222 CCACCACGAAATCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 5243163 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| | ||| |||||||| | |||| | ||| || || ||| Sbjct 5243162 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 5243103 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || |||||| ||||||| ||||||| || || ||| || Sbjct 5243102 ATTCCTTCCTTATCCTGGATTTTGGCCTTTACATTTTCTATCGTTTCCGAGGGTTCAACC 5243043 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | ||| ||||| || || || || ||||| || ||||| ||||| || Sbjct 5243042 TCGAGGGTTATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 5242993 >seq573 Length=1150292 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || || | |||||| || || || || || |||||||| || Sbjct 200470 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 200529 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| | ||| |||||||| | |||| | ||| || || ||| Sbjct 200530 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 200589 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || ||| ||||||| ||||||| ||||| ||| || Sbjct 200590 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 200649 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | ||| ||||| || || || || ||||| || ||||| ||||| || Sbjct 200650 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 200699 >seq434 Length=1819716 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || || | |||||| || || || || || ||||| || || Sbjct 1331282 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTATAGTCAGAC 1331341 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| | ||| |||||||| | |||| | ||| || || ||| Sbjct 1331342 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 1331401 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || ||| ||||||| ||||||| ||||| ||| || Sbjct 1331402 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 1331461 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | ||| ||||| || ||||| || ||||| || ||||| ||||| || Sbjct 1331462 TCGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTTT 1331511 >seq142 Length=5139840 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || || | |||||| || || || |||| |||||||| || Sbjct 3725168 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCCTTTGAATGTTGTAGTCAAAC 3725227 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | |||||| | ||| |||||||| | |||| | ||| || | ||| Sbjct 3725228 AAAGTACGTCTGTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCCTTGCTGACCAGGAGGA 3725287 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || ||| ||||||| ||||||| ||||| ||| || Sbjct 3725288 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 3725347 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | | | ||||| || ||||| || ||||| || ||||| ||||| || Sbjct 3725348 TCGAGGTTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTTT 3725397 >seq19 Length=20362211 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || || | |||||| || | || ||||| |||||||| || Sbjct 6160571 CCACCACAAAGTCTCAACACAAGATGAAGAGTAAACTCCTTTTGAATGTTGTAGTCAGAC 6160512 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | ||||||| | ||| |||||||| | |||| | ||| || || ||| Sbjct 6160511 AAAGTACGTCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 6160452 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||||||||| || || ||| ||||||| ||||||| |||| |||| | Sbjct 6160451 ATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATTATATCCGAGGTTTCAAAC 6160392 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | ||| ||||| | | | || ||||| | |||||| ||||| || Sbjct 6160391 TCAAGGGTGATGGTCTCCCTCATAAGGGTTTTCAGAAAAATCTGCATTTT 6160342 >seq3 Length=16812482 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| | || | |||||| || || || || || |||||||| || Sbjct 14706844 CCACCACGAAGTCTCAGCACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 14706903 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| | ||| |||||||| | |||| | ||| || || ||| Sbjct 14706904 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 14706963 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || ||| ||||||| ||||||| |||| ||| || Sbjct 14706964 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCTGAGGGTTCAACC 14707023 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | ||| ||||| || || || || ||||| || ||||| ||||| || Sbjct 14707024 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 14707073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362147612993796