Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq72 87.8 1e-12 >seq72 Length=7750101 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/220 (70%), Gaps = 7/220 (3%) Strand=Plus/Plus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| | ||| | || ||||| || || || ||||| ||||| ||| || || || Sbjct 2355990 CAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGATAAAGTGCGTCCATC 2356049 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| | ||| ||| ||| || | | |||||| || | || || ||||| || || Sbjct 2356050 TTCCAGTGTCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 2356109 Query 33277 ---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 | | | |||| |||| ||| ||||| || ||||| ||| || || || || Sbjct 2356110 CTGGATTTTGGCCT---TTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTAAT 2356166 Query 33334 CGTTTTTCCC-GTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || |||||| ||||||||||| || ||||| ||||| || Sbjct 2356167 GGTCTTTCCCCGTAAGAGTTTTCACAAAAATCTGCATTTT 2356206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318749798210088