Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq630 262 3e-65 seq867 129 5e-25 seq57 93.3 4e-14 seq2 84.2 2e-11 >seq630 Length=879232 Score = 262 bits (290), Expect = 3e-65 Identities = 484/707 (68%), Gaps = 17/707 (2%) Strand=Plus/Plus Query 12875 ACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAAA 12934 ||||| || ||||| ||||| | |||||||| | | |||||| |||||||| || || Sbjct 417552 ACTCTCTTCTCAAAGAAGTTAATCTTTCCTTCCAGTGGAATATTCTCCATAAAGTCAAAT 417611 Query 12935 GGATTTT----TCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAATCTGTCAGC 12990 ||||| | || | || || || | || | ||| || | | |||||| || Sbjct 417612 GGATTCTCTACTCTGAAAACC----TTGCTAAAACCCAGTTCCAGCATAAGTCTGTCTGC 417667 Query 12991 AACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCAT 13050 |||||||| ||||| || ||||||| | || ||||| || || | || ||||||| Sbjct 417668 CACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCA- 417726 Query 13051 AGCT-TCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTTATTA 13109 || | || || | || | | |||||| ||| || | ||||| ||| |||||| | Sbjct 417727 AGATCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCATTGATAATTATTTCTCTTTCTC 417786 Query 13110 CGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATCACAGTGCA 13169 | |||| |||| | | ||| || | ||||||| || |||||||||||||| | Sbjct 417787 CCGGCTCTGATGGTTTGTGTACTAGGTGTTGGAACATCAGGCAAGCAAAATCACAGTGTA 417846 Query 13170 ATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTT 13229 | || |||||||| || | || || || |||||||| || || ||||| || ||||||| Sbjct 417847 AACCCTCATCTCTGCTAAAAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTT 417906 Query 13230 TTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAA 13289 | |||| ||| ||||| | ||| || ||||| ||||| || | ||||| ||||| |||| Sbjct 417907 TCTTAAGCCAGAATATGGAAGCTAAAGAACCAGAAAAGAAGACGCCTTCCACTGCAGCAA 417966 Query 13290 ACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGT 13349 | | | ||||||||| ||| | ||| | | ||||| ||||| || Sbjct 417967 AGG-------CAGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCGGT 418019 Query 13350 TTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAtttttttCCT 13409 ||| || | || || || ||| |||| || || || || | | | | |||| Sbjct 418020 CTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTCCCTTTCGC 418079 Query 13410 TACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCA 13469 | ||| ||||| || || | | | ||||||||||| ||||| || || |||| Sbjct 418080 TGGGATCTTTTATATACGTGTCAGTAAGGAGACTATACATTTCAGAATGTATGTTGTCCA 418139 Query 13470 TCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATC 13529 | | |||||||| ||||| ||||| | ||||||| | ||||||||| | ||||| Sbjct 418140 TGCCAATTTGGAATCCATAGAAACAGCGGGCCTCTGTAATCTGAACTTCTTGGCTAAATC 418199 Query 13530 TTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaa 13576 || | |||||||| || ||||| |||||||| || ||||| ||| Sbjct 418200 GCTCCACCAAGTTTTCATTTACTATGCCGTCACTTGCTGCAAAGAAA 418246 >seq867 Length=266704 Score = 129 bits (142), Expect = 5e-25 Identities = 230/335 (69%), Gaps = 8/335 (2%) Strand=Plus/Minus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 ||||||| || ||| | ||||| || | ||||| |||||||| ||||| || |||| Sbjct 180889 TTGACATCACTCCCATCCTCTGATACTCACCTACTCTCTTTTCAAAGAAGTTAGTCTTTC 180830 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTT 12958 |||| | |||||||| |||||||| || || ||||| | || | || || Sbjct 180829 CTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACC----TTG 180774 Query 12959 TTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAA 13018 || | || |||| || | | ||| || || |||||||| ||||| || ||||||| | Sbjct 180773 CTAAAACCCGATTCCAGCATAAGTCTATCTGCCACAAACTCAATGTATTGCTTCATTAGA 180714 Query 13019 TCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATA 13078 || |||||||| || | || |||||| || || || | || | | |||||| Sbjct 180713 GTGCAATTCATTCCGATGAGCTTCACAGGCGAGGCCTCAGTGAGGAACTCCTGTTCTATC 180654 Query 13079 TCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGC 13138 ||| || | ||||| ||| ||||||| | | |||| |||| | | |||||| Sbjct 180653 CGAACAGCATTGATAATTATTTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTAGATGT 180594 Query 13139 TTAAACATCATACATGCAAAATCACAGTGCAATCC 13173 || |||| || || ||||||||||||| || || Sbjct 180593 TTGAACAACAGGCAAACAAAATCACAGTGTAAACC 180559 >seq57 Length=8566406 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || |||||||| |||| || | Sbjct 1418655 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCTGGCATAAGACCTCTCTTCT 1418714 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || || || || || | |||||| || || || || | Sbjct 1418715 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCGAAGG 1418774 Query 13293 CTATCAACCTTTCACC 13308 | | || ||||| || Sbjct 1418775 CCACCACTCTTTCCCC 1418790 Score = 89.7 bits (98), Expect = 4e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 12875 ACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAAA 12934 |||| ||| ||||| || ||||||||||||||||| ||||| |||||||||||||| ||| Sbjct 1408760 ACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCCATAAAATCAAAA 1408819 Query 12935 GGATTTT 12941 ||||||| Sbjct 1408820 GGATTTT 1408826 >seq2 Length=18007423 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 4/89 (4%) Strand=Plus/Minus Query 13434 TCAATAAG----CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAA 13489 |||||||| ||||||||||| ||||| || |||||||| || |||||||||||||| Sbjct 1939005 TCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAACCATAG 1938946 Query 13490 AAACATCTAGCCTCTGATACCTGAACTTC 13518 ||||| | || |||| | ||||||||| Sbjct 1938945 AAACAGCGGGCTTCTGTAATCTGAACTTC 1938917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430944812408712