Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq630 262 3e-65
seq867 129 5e-25
seq57 93.3 4e-14
seq2 84.2 2e-11
>seq630
Length=879232
Score = 262 bits (290), Expect = 3e-65
Identities = 484/707 (68%), Gaps = 17/707 (2%)
Strand=Plus/Plus
Query 12875 ACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAAA 12934
||||| || ||||| ||||| | |||||||| | | |||||| |||||||| || ||
Sbjct 417552 ACTCTCTTCTCAAAGAAGTTAATCTTTCCTTCCAGTGGAATATTCTCCATAAAGTCAAAT 417611
Query 12935 GGATTTT----TCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAATCTGTCAGC 12990
||||| | || | || || || | || | ||| || | | |||||| ||
Sbjct 417612 GGATTCTCTACTCTGAAAACC----TTGCTAAAACCCAGTTCCAGCATAAGTCTGTCTGC 417667
Query 12991 AACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCAT 13050
|||||||| ||||| || ||||||| | || ||||| || || | || |||||||
Sbjct 417668 CACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCA- 417726
Query 13051 AGCT-TCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTTATTA 13109
|| | || || | || | | |||||| ||| || | ||||| ||| |||||| |
Sbjct 417727 AGATCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCATTGATAATTATTTCTCTTTCTC 417786
Query 13110 CGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATCACAGTGCA 13169
| |||| |||| | | ||| || | ||||||| || |||||||||||||| |
Sbjct 417787 CCGGCTCTGATGGTTTGTGTACTAGGTGTTGGAACATCAGGCAAGCAAAATCACAGTGTA 417846
Query 13170 ATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTT 13229
| || |||||||| || | || || || |||||||| || || ||||| || |||||||
Sbjct 417847 AACCCTCATCTCTGCTAAAAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTT 417906
Query 13230 TTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAA 13289
| |||| ||| ||||| | ||| || ||||| ||||| || | ||||| ||||| ||||
Sbjct 417907 TCTTAAGCCAGAATATGGAAGCTAAAGAACCAGAAAAGAAGACGCCTTCCACTGCAGCAA 417966
Query 13290 ACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGT 13349
| | | ||||||||| ||| | ||| | | ||||| ||||| ||
Sbjct 417967 AGG-------CAGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCGGT 418019
Query 13350 TTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAtttttttCCT 13409
||| || | || || || ||| |||| || || || || | | | | ||||
Sbjct 418020 CTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTCCCTTTCGC 418079
Query 13410 TACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCA 13469
| ||| ||||| || || | | | ||||||||||| ||||| || || ||||
Sbjct 418080 TGGGATCTTTTATATACGTGTCAGTAAGGAGACTATACATTTCAGAATGTATGTTGTCCA 418139
Query 13470 TCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATC 13529
| | |||||||| ||||| ||||| | ||||||| | ||||||||| | |||||
Sbjct 418140 TGCCAATTTGGAATCCATAGAAACAGCGGGCCTCTGTAATCTGAACTTCTTGGCTAAATC 418199
Query 13530 TTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaa 13576
|| | |||||||| || ||||| |||||||| || ||||| |||
Sbjct 418200 GCTCCACCAAGTTTTCATTTACTATGCCGTCACTTGCTGCAAAGAAA 418246
>seq867
Length=266704
Score = 129 bits (142), Expect = 5e-25
Identities = 230/335 (69%), Gaps = 8/335 (2%)
Strand=Plus/Minus
Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902
||||||| || ||| | ||||| || | ||||| |||||||| ||||| || ||||
Sbjct 180889 TTGACATCACTCCCATCCTCTGATACTCACCTACTCTCTTTTCAAAGAAGTTAGTCTTTC 180830
Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTT 12958
|||| | |||||||| |||||||| || || ||||| | || | || ||
Sbjct 180829 CTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACC----TTG 180774
Query 12959 TTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAA 13018
|| | || |||| || | | ||| || || |||||||| ||||| || ||||||| |
Sbjct 180773 CTAAAACCCGATTCCAGCATAAGTCTATCTGCCACAAACTCAATGTATTGCTTCATTAGA 180714
Query 13019 TCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATA 13078
|| |||||||| || | || |||||| || || || | || | | ||||||
Sbjct 180713 GTGCAATTCATTCCGATGAGCTTCACAGGCGAGGCCTCAGTGAGGAACTCCTGTTCTATC 180654
Query 13079 TCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGC 13138
||| || | ||||| ||| ||||||| | | |||| |||| | | ||||||
Sbjct 180653 CGAACAGCATTGATAATTATTTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTAGATGT 180594
Query 13139 TTAAACATCATACATGCAAAATCACAGTGCAATCC 13173
|| |||| || || ||||||||||||| || ||
Sbjct 180593 TTGAACAACAGGCAAACAAAATCACAGTGTAAACC 180559
>seq57
Length=8566406
Score = 93.3 bits (102), Expect = 4e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232
|||||||||| || || || || || ||||| || || || |||||||| |||| || |
Sbjct 1418655 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCTGGCATAAGACCTCTCTTCT 1418714
Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292
| | ||| |||||||||||||| || || || || || | |||||| || || || || |
Sbjct 1418715 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCGAAGG 1418774
Query 13293 CTATCAACCTTTCACC 13308
| | || ||||| ||
Sbjct 1418775 CCACCACTCTTTCCCC 1418790
Score = 89.7 bits (98), Expect = 4e-13
Identities = 60/67 (90%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 12875 ACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAAA 12934
|||| ||| ||||| || ||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 1408760 ACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCCATAAAATCAAAA 1408819
Query 12935 GGATTTT 12941
|||||||
Sbjct 1408820 GGATTTT 1408826
>seq2
Length=18007423
Score = 84.2 bits (92), Expect = 2e-11
Identities = 72/89 (81%), Gaps = 4/89 (4%)
Strand=Plus/Minus
Query 13434 TCAATAAG----CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAA 13489
|||||||| ||||||||||| ||||| || |||||||| || ||||||||||||||
Sbjct 1939005 TCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAACCATAG 1938946
Query 13490 AAACATCTAGCCTCTGATACCTGAACTTC 13518
||||| | || |||| | |||||||||
Sbjct 1938945 AAACAGCGGGCTTCTGTAATCTGAACTTC 1938917
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430944812408712
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |