Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq599 235 4e-57 seq13 109 4e-19 >seq599 Length=1005688 Score = 235 bits (260), Expect = 4e-57 Identities = 404/580 (70%), Gaps = 5/580 (1%) Strand=Plus/Minus Query 25387 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGT 25446 ||||||||| |||||| || | || |||||| | ||||| || | | ||||| ||||| Sbjct 754578 TGGGAAAGG-TCTGGGTTCTCGCTGAAGCTGAATTTTCAGTGGCTTGATGTGATTCAGGT 754520 Query 25447 AGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAG 25506 | | || || ||||||| ||| || ||||| || || || | || || || | || | Sbjct 754519 AAATATGGGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGCG 754460 Query 25507 CCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGT 25566 | |||| ||||||||| | |||||||||| |||| || || || || | ||||||| Sbjct 754459 CGATCACGTACGTGAGCAAGGTGTAGCTGGCGGTGTTGAAAGGCACACCTAGGCCCATGT 754400 Query 25567 CCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACAC 25626 | || || ||||||| ||||| || || ||||| | | | |||| ||||| || Sbjct 754399 CTCCT-GATCTCTGGTGCAGCTGGCAGGACAGCTCACCATTCACCTCGTAGAACTGGCAG 754341 Query 25627 ATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACG 25686 | || | ||| ||||| || || || || | ||| | || ||||| ||||||| | Sbjct 754340 AGGGCATGGCATGGAGGCAGCGCCATCAGAGGAAGATCTCTTGGATTCCAAGCGCACATG 754281 Query 25687 ATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCC 25746 ||||| | ||||| || |||||| |||| || | |||| || || || Sbjct 754280 ATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAGTCACTCTTTGTAGTTGGTCA 754221 Query 25747 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCAC 25806 || || || || || |||| ||| || |||| ||||| || |||| ||||||| Sbjct 754220 ACTCCTTGTCCTGAATAATCTGAATCCATATCTCTGTATTCTGCCCCAAAATGCCTCCAC 754161 Query 25807 TGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCA-AAGCCCCTCTTATC 25865 ||||| || || || || || | ||| || ||||| ||| || | || ||| |||| Sbjct 754160 TGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTG-GCGGAGAATCCCAAGCTATC 754102 Query 25866 CAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTT 25925 || |||||||| ||| |||||||| |||||||| || || ||||| || |||||||| Sbjct 754101 CAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCTTT 754042 Query 25926 GGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGCC 25965 | ||| ||| || ||| || ||||||| |||| || Sbjct 754041 AG-CTTTCTGGGTCCCTTGATAAAGCACAGCAACTCCTCC 754003 >seq13 Length=13416947 Score = 109 bits (120), Expect = 4e-19 Identities = 131/174 (75%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| ||||| || |||| |||||||||||| || || || || || | ||| Sbjct 11478307 CATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTC 11478248 Query 25833 TCCATCTTCCCTGTGCTCA-AAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 || ||||| ||| || | || ||| |||||| |||||||| ||| |||||||| | Sbjct 11478247 CCCTTCTTCTCTG-GCGGAGAATCCCAAGCTATCCAGAAAGTCTCGGGATCCATTGGCAT 11478189 Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 25945 ||||||| || || ||||| || |||||||| | |||||||| || |||| Sbjct 11478188 CCCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCC-CTGA 11478136 Score = 91.5 bits (100), Expect = 1e-13 Identities = 111/150 (74%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||||||||| || ||||||||| ||||| || || || || | |||||| Sbjct 11482501 GCGATCATGTACGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGCACACCTAGGCCCATG 11482442 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | || || |||||||| ||||| || || ||||| ||| |||||| ||||| || Sbjct 11482441 T-CTCCTGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCA 11482383 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 | || | ||| ||||| || || || || Sbjct 11482382 GAGGGCATGGCATGGAGGCAGCGCCATCAG 11482353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340107935324388