Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_005832.1
Length=106332
Score E
Sequences producing significant alignments: (Bits) Value
seq599 235 4e-57
seq13 109 4e-19
>seq599
Length=1005688
Score = 235 bits (260), Expect = 4e-57
Identities = 404/580 (70%), Gaps = 5/580 (1%)
Strand=Plus/Minus
Query 25387 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGT 25446
||||||||| |||||| || | || |||||| | ||||| || | | ||||| |||||
Sbjct 754578 TGGGAAAGG-TCTGGGTTCTCGCTGAAGCTGAATTTTCAGTGGCTTGATGTGATTCAGGT 754520
Query 25447 AGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAG 25506
| | || || ||||||| ||| || ||||| || || || | || || || | || |
Sbjct 754519 AAATATGGGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGCG 754460
Query 25507 CCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGT 25566
| |||| ||||||||| | |||||||||| |||| || || || || | |||||||
Sbjct 754459 CGATCACGTACGTGAGCAAGGTGTAGCTGGCGGTGTTGAAAGGCACACCTAGGCCCATGT 754400
Query 25567 CCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACAC 25626
| || || ||||||| ||||| || || ||||| | | | |||| ||||| ||
Sbjct 754399 CTCCT-GATCTCTGGTGCAGCTGGCAGGACAGCTCACCATTCACCTCGTAGAACTGGCAG 754341
Query 25627 ATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACG 25686
| || | ||| ||||| || || || || | ||| | || ||||| ||||||| |
Sbjct 754340 AGGGCATGGCATGGAGGCAGCGCCATCAGAGGAAGATCTCTTGGATTCCAAGCGCACATG 754281
Query 25687 ATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCC 25746
||||| | ||||| || |||||| |||| || | |||| || || ||
Sbjct 754280 ATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAGTCACTCTTTGTAGTTGGTCA 754221
Query 25747 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCAC 25806
|| || || || || |||| ||| || |||| ||||| || |||| |||||||
Sbjct 754220 ACTCCTTGTCCTGAATAATCTGAATCCATATCTCTGTATTCTGCCCCAAAATGCCTCCAC 754161
Query 25807 TGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCA-AAGCCCCTCTTATC 25865
||||| || || || || || | ||| || ||||| ||| || | || ||| ||||
Sbjct 754160 TGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTG-GCGGAGAATCCCAAGCTATC 754102
Query 25866 CAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTT 25925
|| |||||||| ||| |||||||| |||||||| || || ||||| || ||||||||
Sbjct 754101 CAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCTTT 754042
Query 25926 GGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGCC 25965
| ||| ||| || ||| || ||||||| |||| ||
Sbjct 754041 AG-CTTTCTGGGTCCCTTGATAAAGCACAGCAACTCCTCC 754003
>seq13
Length=13416947
Score = 109 bits (120), Expect = 4e-19
Identities = 131/174 (75%), Gaps = 3/174 (2%)
Strand=Plus/Minus
Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832
||| || |||| ||||| || |||| |||||||||||| || || || || || | |||
Sbjct 11478307 CATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTC 11478248
Query 25833 TCCATCTTCCCTGTGCTCA-AAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891
|| ||||| ||| || | || ||| |||||| |||||||| ||| |||||||| |
Sbjct 11478247 CCCTTCTTCTCTG-GCGGAGAATCCCAAGCTATCCAGAAAGTCTCGGGATCCATTGGCAT 11478189
Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 25945
||||||| || || ||||| || |||||||| | |||||||| || ||||
Sbjct 11478188 CCCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCC-CTGA 11478136
Score = 91.5 bits (100), Expect = 1e-13
Identities = 111/150 (74%), Gaps = 1/150 (1%)
Strand=Plus/Minus
Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565
|| |||||||||||||| || ||||||||| ||||| || || || || | ||||||
Sbjct 11482501 GCGATCATGTACGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGCACACCTAGGCCCATG 11482442
Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625
| | || || |||||||| ||||| || || ||||| ||| |||||| ||||| ||
Sbjct 11482441 T-CTCCTGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCA 11482383
Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655
| || | ||| ||||| || || || ||
Sbjct 11482382 GAGGGCATGGCATGGAGGCAGCGCCATCAG 11482353
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 340107935324388
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |