Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq170 87.8 2e-12
seq4 82.4 6e-11
>seq170
Length=4466143
Score = 87.8 bits (96), Expect = 2e-12
Identities = 143/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
||||| ||| ||| ||||| |||||||| |||| || ||| | || |||||||||
Sbjct 3883253 TGAAGGGTGGACTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGC 3883312
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
|| ||| | | || || | |||||| || || | | |||||||||| || ||
Sbjct 3883313 TTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTT 3883372
Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703
||||| | | ||||| || | | |||| ||||| || ||||| || |||||
Sbjct 3883373 GCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTC 3883432
Query 48704 AGAGTTTTCACAAAAATCTGCATCGT 48729
|| || ||||| || |||||||| ||
Sbjct 3883433 AGTGTCTTCACGAAGATCTGCATTGT 3883458
>seq4
Length=15321207
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || || || || ||||| | |||||| || |||||| ||||||||||| ||||
Sbjct 5243223 ACCACCACGAAATCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGA 5243164
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
||| || | || ||||| ||||| || | | || | | |||||||| ||
Sbjct 5243163 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 5243104
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | |||||| ||| ||||| ||| | | |||| || || | | ||
Sbjct 5243103 AATTCCTTCCTTATCCTGGATTTTGGCCTTTACATTTTCTATCGTTTCCGAGGGTTCAAC 5243044
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||||| |||||||| || || || || |||||||| |||||||||||
Sbjct 5243043 CTCGAGGGTTATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 5242996
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421214461103156
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |