Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq170 87.8 2e-12 seq4 82.4 6e-11 >seq170 Length=4466143 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| ||| ||||| |||||||| |||| || ||| | || ||||||||| Sbjct 3883253 TGAAGGGTGGACTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGC 3883312 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| | | || || | |||||| || || | | |||||||||| || || Sbjct 3883313 TTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTT 3883372 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| || | | |||| ||||| || ||||| || ||||| Sbjct 3883373 GCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTC 3883432 Query 48704 AGAGTTTTCACAAAAATCTGCATCGT 48729 || || ||||| || |||||||| || Sbjct 3883433 AGTGTCTTCACGAAGATCTGCATTGT 3883458 >seq4 Length=15321207 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || || || ||||| | |||||| || |||||| ||||||||||| |||| Sbjct 5243223 ACCACCACGAAATCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGA 5243164 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | || ||||| ||||| || | | || | | |||||||| || Sbjct 5243163 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 5243104 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| ||| ||||| ||| | | |||| || || | | || Sbjct 5243103 AATTCCTTCCTTATCCTGGATTTTGGCCTTTACATTTTCTATCGTTTCCGAGGGTTCAAC 5243044 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| |||||||| || || || || |||||||| ||||||||||| Sbjct 5243043 CTCGAGGGTTATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 5242996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421214461103156