Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_006146.1
Length=171096
Score E
Sequences producing significant alignments: (Bits) Value
seq39 134 2e-26
>seq39
Length=11376263
Score = 134 bits (148), Expect = 2e-26
Identities = 113/139 (81%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199
|||| |||||||| || || ||| ||||||| ||||||||||||||||||||||| || |
Sbjct 4485666 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGA 4485607
Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259
|||| || ||||| || || ||||| ||| ||| | |||||||||||| ||||| || |
Sbjct 4485606 TGCCCCAAGCTGAGAACCATGACCCAGACGTCAAGGTGCACGTGAACTCCCTGGGGGAAA 4485547
Query 10260 ATCTAAAGACCCTAAGGCT 10278
| || |||||| | ||||
Sbjct 4485546 AGCTGAAGACCTTCCGGCT 4485528
Score = 95.1 bits (104), Expect = 1e-14
Identities = 70/82 (85%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418
|||| || || ||||| |||||||||||||||||||| |||||||| || || |||| |
Sbjct 4483328 AGCTCCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCGACTACA 4483269
Query 10419 TAGAAGCATACATGACCATGAA 10440
||||||| |||||||| |||||
Sbjct 4483268 TAGAAGCCTACATGACAATGAA 4483247
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547330236930560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |