Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq34 187 4e-42 seq310 120 4e-22 >seq34 Length=10557659 Score = 187 bits (206), Expect = 4e-42 Identities = 180/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| || || ||| |||||| ||||| || |||| || |||||||||||| Sbjct 7335555 GTCTGGAACAACTGCTCATCATCCCATTCCGGATGCTCCTGTTTAAGCACATCGCACACT 7335614 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||||||||||| |||||||| || || |||||||| |||||||||||||| ||||| Sbjct 7335615 CTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 7335674 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || || || | |||| || || || |||| ||||| |||||||| | Sbjct 7335675 ACCTCCTGCCCCACCGCAAACCGCAGATGCTCAGGAACTTGAGGAGGGTAGATCATCTCT 7335734 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCTGA 9864 |||| ||||||||| | ||| |||||||| || || ||||| |||||| Sbjct 7335735 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCTGA 7335785 Score = 123 bits (136), Expect = 4e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||| ||||| ||||| || || |||||| ||| ||| | || Sbjct 7336712 TCTTACCCCATGGCCCAGGCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 7336771 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| |||||||| || ||| |||| || |||||||| | || | |||||||||||| Sbjct 7336772 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGAGCCCTGGGGATC 7336831 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 10185 || |||| | || | |||||| ||||||||||| Sbjct 7336832 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAA 7336869 Score = 100 bits (110), Expect = 4e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || || |||||||| || || | ||| || ||||| || || | Sbjct 7337312 TCACCTTTCACACCCAGGGGAGTTGGGCAGTCATCAGGTACTGGAGGAAGGGCTCTAGTA 7337371 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 ||||||||||| || ||||| |||||||||||| ||| | ||||| | |||||| | Sbjct 7337372 TAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAACATTGTAGGTT 7337431 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || || || |||||||||| | ||| ||||| Sbjct 7337432 GGTGGACTCTCAATCAAATGTGCTCTGGCTGAA 7337464 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| ||||| || ||||| ||||| || | ||||||||| || || | Sbjct 7334964 CTTACCCTGCCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGTAATTCCATGTTCC 7335023 Query 9382 ATGAGTATGGAATTGTTGTAAACGAA--GTTAATGTAGTCATA-CTTTGTTTTATCAATC 9438 | | || || |||||||| | || ||| || ||| || || || | || ||| Sbjct 7335024 AGTAACATAGAGTTGTTGTAGATAAACTGTTGAT--AGTTGTAGCTCTGGTC-ATGAATT 7335080 Query 9439 TCAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATA 9498 | ||| | || |||| || | |||||||||||| | | |||||||| | | ||| Sbjct 7335081 TGAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATAGAGGGTATTAAACTCAGCAGCAATA 7335140 Query 9499 CGATTTTGGTACTGGAA 9515 ||||||||||||||||| Sbjct 7335141 CGATTTTGGTACTGGAA 7335157 >seq310 Length=2722360 Score = 120 bits (132), Expect = 4e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||||||||| ||| |||| || ||||| || ||||| || |||||||| |||| | Sbjct 2583814 TCTTGACGATGTTAAAGCCCATCTCGCCGCCAAATGTGCTCGGCTTCCAGTATTCCGGAG 2583755 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 | |||||| ||| | | ||| || ||||||||||| |||||||| | ||| | || | Sbjct 2583754 AACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATAC 2583695 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || ||||| | ||| ||| || |||||| | | | || | || ||||||| Sbjct 2583694 TCTCCCCAAAGATAGAGTTCGGATGGCACTTTTCAAGAAGCAGCCCAGGATAGAACTCCA 2583635 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 || || |||||||| || | || | || || || || ||||| |||||| Sbjct 2583634 ATGCATCAATGTCTCCATACAACTCCTCCAACTCCGCTGCCATCTCCTTCTCTCCT 2583579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708461422456640