Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq34 187 4e-42
seq310 120 4e-22
>seq34
Length=10557659
Score = 187 bits (206), Expect = 4e-42
Identities = 180/231 (78%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693
||||| |||| || || ||| |||||| ||||| || |||| || ||||||||||||
Sbjct 7335555 GTCTGGAACAACTGCTCATCATCCCATTCCGGATGCTCCTGTTTAAGCACATCGCACACT 7335614
Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753
||||||||||||| |||||||| || || |||||||| |||||||||||||| |||||
Sbjct 7335615 CTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 7335674
Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813
|||| || || || || | |||| || || || |||| ||||| |||||||| |
Sbjct 7335675 ACCTCCTGCCCCACCGCAAACCGCAGATGCTCAGGAACTTGAGGAGGGTAGATCATCTCT 7335734
Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCTGA 9864
|||| ||||||||| | ||| |||||||| || || ||||| ||||||
Sbjct 7335735 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCTGA 7335785
Score = 123 bits (136), Expect = 4e-23
Identities = 122/158 (77%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087
|||||||||||| ||||| ||||| ||||| || || |||||| ||| ||| | ||
Sbjct 7336712 TCTTACCCCATGGCCCAGGCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 7336771
Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147
|||||| |||||||| || ||| |||| || |||||||| | || | ||||||||||||
Sbjct 7336772 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGAGCCCTGGGGATC 7336831
Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 10185
|| |||| | || | |||||| |||||||||||
Sbjct 7336832 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAA 7336869
Score = 100 bits (110), Expect = 4e-16
Identities = 114/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346
|||||||| || || || |||||||| || || | ||| || ||||| || || |
Sbjct 7337312 TCACCTTTCACACCCAGGGGAGTTGGGCAGTCATCAGGTACTGGAGGAAGGGCTCTAGTA 7337371
Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406
||||||||||| || ||||| |||||||||||| ||| | ||||| | |||||| |
Sbjct 7337372 TAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAACATTGTAGGTT 7337431
Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439
|| || || |||||||||| | ||| |||||
Sbjct 7337432 GGTGGACTCTCAATCAAATGTGCTCTGGCTGAA 7337464
Score = 91.5 bits (100), Expect = 2e-13
Identities = 141/197 (72%), Gaps = 6/197 (3%)
Strand=Plus/Plus
Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381
||||| | |||||| ||||| || ||||| ||||| || | ||||||||| || || |
Sbjct 7334964 CTTACCCTGCCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGTAATTCCATGTTCC 7335023
Query 9382 ATGAGTATGGAATTGTTGTAAACGAA--GTTAATGTAGTCATA-CTTTGTTTTATCAATC 9438
| | || || |||||||| | || ||| || ||| || || || | || |||
Sbjct 7335024 AGTAACATAGAGTTGTTGTAGATAAACTGTTGAT--AGTTGTAGCTCTGGTC-ATGAATT 7335080
Query 9439 TCAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATA 9498
| ||| | || |||| || | |||||||||||| | | |||||||| | | |||
Sbjct 7335081 TGAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATAGAGGGTATTAAACTCAGCAGCAATA 7335140
Query 9499 CGATTTTGGTACTGGAA 9515
|||||||||||||||||
Sbjct 7335141 CGATTTTGGTACTGGAA 7335157
>seq310
Length=2722360
Score = 120 bits (132), Expect = 4e-22
Identities = 168/236 (71%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
|||||||||| ||| |||| || ||||| || ||||| || |||||||| |||| |
Sbjct 2583814 TCTTGACGATGTTAAAGCCCATCTCGCCGCCAAATGTGCTCGGCTTCCAGTATTCCGGAG 2583755
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
| |||||| ||| | | ||| || ||||||||||| |||||||| | ||| | || |
Sbjct 2583754 AACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATAC 2583695
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
|||| || ||||| | ||| ||| || |||||| | | | || | || |||||||
Sbjct 2583694 TCTCCCCAAAGATAGAGTTCGGATGGCACTTTTCAAGAAGCAGCCCAGGATAGAACTCCA 2583635
Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974
|| || |||||||| || | || | || || || || ||||| ||||||
Sbjct 2583634 ATGCATCAATGTCTCCATACAACTCCTCCAACTCCGCTGCCATCTCCTTCTCTCCT 2583579
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708461422456640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |