Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq526 241 1e-58 seq630 215 5e-51 seq867 127 2e-24 seq2 98.7 1e-15 seq518 91.5 2e-13 seq57 91.5 2e-13 seq964 84.2 2e-11 seq494 82.4 8e-11 >seq526 Length=1402496 Score = 241 bits (266), Expect = 1e-58 Identities = 527/790 (67%), Gaps = 14/790 (2%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| ||||||||| | || | ||| ||| ||| | ||||||| | |||| Sbjct 113328 TTCATTTAGAAATCAGCACCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 113387 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| || || || || || ||||||||||||| ||| ||| Sbjct 113388 ATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATA 113447 Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301 |||||||| ||||||||||| || | | || | || || |||||||||| | Sbjct 113448 TTCTCCATAAAGTCAAATGGATTCTCTATTCTGAAAACCTTGCTAAAACCCAGTTC-CAG 113506 Query 21302 AATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATC 21361 || ||| ||||| ||||| || || ||||| ||||| |||||||| || || Sbjct 113507 CAT-GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATG 113565 Query 21362 AATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATT 21421 | | ||||| | || | || | ||| || |||||| || || | | | || Sbjct 113566 AGCTCCACAGGCAAGGCCTCAGTAAGAAACTCTTGTTCTATCCGAACAGCATTGATAGTT 113625 Query 21422 ATATTTATTA-----TCCT-AGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAA 21475 || | | ||| |||| |||| | | ||| || ||||| ||||||| Sbjct 113626 ATTTCTCTTACTCTCTCCTCTGATGGTTT----GTGTAC--TAGGTGTTTGAACATCAGG 113679 Query 21476 CATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAA 21535 || ||||||| | || ||||| ||||| || || | | |||| ||||||||| | Sbjct 113680 CAAGCAAAATGTGAGTGTAAACCCTCATCTCTGCTAAAAAGGTCATGAGAAAATGTGAGG 113739 Query 21536 CCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAA 21595 || ||||| | ||||| || || | ||| ||||| || ||||| | || |||||| | Sbjct 113740 CCAGGCATCAGTCCTCATTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGTAG 113799 Query 21596 ATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAAT 21655 ||||| || || |||||||| || || | |||||||| || |||| ||||| ||| Sbjct 113800 ATGCCTTCCACTGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCTCTTTGTCCCCA 113859 Query 21656 ATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTT 21715 ||||| ||||| | |||||| | || | |||| || || ||||| || || Sbjct 113860 ATCCAGCGCAAGGCCCAATCTGCCTTCTTGTTGACACAAGGCATCGTTTCAATGGCATTG 113919 Query 21716 AAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATT 21775 || ||| | |||||| ||| ||||| || ||||||| Sbjct 113920 AAGAGAAATTCCCTTTCATTGGGATCTTTTATGTAAGTGTCGATAAGGAGACCATACATT 113979 Query 21776 TCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACAT 21835 ||||||||||| ||||| || || || || || || || ||||| | | |||| | Sbjct 113980 TCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGCCTTCTGTAATC 114039 Query 21836 TGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCA 21895 |||| || |||||| | ||||||||||||||||||| |||||||| || ||| Sbjct 114040 TGAAGTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCA 114099 Query 21896 AAAAATGCCA 21905 | || |||| Sbjct 114100 AGGAAAGCCA 114109 >seq630 Length=879232 Score = 215 bits (238), Expect = 5e-51 Identities = 520/783 (66%), Gaps = 15/783 (2%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACA-TTATCTTCtttttttGACATAATTCC 21180 || ||||| || |||||||| || || |||| | || ||| |||||| | ||| Sbjct 417474 TTCATTTAGAAGTCAGCATCCAA-GATAAAAGAATTCTCTGTGGGACTTGACACCACTCC 417532 Query 21181 CATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATAT 21240 ||| | | || |||| ||||| || || || || || |||||||||||| || || Sbjct 417533 CATCCTCTAATGCTCACCTACTCTCTTCTCAAAGAAGTTAATCTTTCCTTCCAGTGGAAT 417592 Query 21241 AGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGA 21300 | |||||||| ||||||||||| || | | || | || || |||||||||| | Sbjct 417593 ATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCC-A 417651 Query 21301 TAATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGA 21359 |||| ||| ||||| ||||| || || ||||| ||||| |||||||| || | Sbjct 417652 GCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAA 417711 Query 21360 TCAATTTTACAGG-AAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACA 21418 | | || ||||| |||| || || | || | |||||| || || | | | Sbjct 417712 TGAGCTTCACAGGCAAGATCTCA-GTGAGGAACTCCTGTTCTATCCGAACAGCATTGATA 417770 Query 21419 ATTATATTTATTA-TCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACA 21477 ||||| | | || ||| | | | | | | | | || |||| ||||||| || Sbjct 417771 ATTATTTCTCTTTCTCCCGGCTCTGATGGTTTG-TGTACTAGGTGTTGGAACATCAGGCA 417829 Query 21478 TGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACC 21537 ||||||||||| || ||||| ||||| || || | | ||||||||||||||| | || Sbjct 417830 AGCAAAATCACAGTGTAAACCCTCATCTCTGCTAAAAAGTTCATTAGAAAATGTGAGGCC 417889 Query 21538 GGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAAT 21597 ||||| | ||||| || || | ||| ||||| || || || | || |||||||| | Sbjct 417890 AGGCATCAGTCCTCGTTTCTTAAGCCAGAATATGGAAGCTAAAGAACCAGAAAAGAAGAC 417949 Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATAT 21657 ||| || || |||||||| ||| ||||||| || |||| ||||| ||| || Sbjct 417950 GCCTTCCACTGCAGCAAAGGCA-------GTTCACCATAGGTAGCCTCTTTGTCCCCAAT 418002 Query 21658 CCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAA 21717 ||| |||| | |||||| | || | |||| || || ||||| || || || Sbjct 418003 CCAGCGCAAGGCCCGGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAA 418062 Query 21718 AAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTC 21777 ||| | |||| ||| |||| |||||||||||| Sbjct 418063 GAGAAATTCCCTTTCGCTGGGATCTTTTATATACGTGTCAGTAAGGAGACTATACATTTC 418122 Query 21778 AGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTG 21837 ||||||||| || || || | || || ||||| || ||||| | ||||||| | || Sbjct 418123 AGAATGTATGTTGTCCATGCCAATTTGGAATCCATAGAAACAGCGGGCCTCTGTAATCTG 418182 Query 21838 AACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAA 21897 ||| || |||||| | ||||||||||||||||||| || ||||| || ||||| Sbjct 418183 AACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCGTCACTTGCTGCAAA 418242 Query 21898 AAA 21900 || Sbjct 418243 GAA 418245 >seq867 Length=266704 Score = 127 bits (140), Expect = 2e-24 Identities = 181/252 (72%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || |||||||| || | ||| ||| ||| | ||||||| | |||| Sbjct 180935 TTCATTTAGAAGTCAGCATCCAAGGTAAAATAATTCTCTGTTGGACTTGACATCACTCCC 180876 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| |||| ||||| ||||| || || || ||||||||||||| ||| ||| Sbjct 180875 ATCCTCTGATACTCACCTACTCTCTTTTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATA 180816 Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301 |||||||| ||||||||||| || | | || | || || ||||| ||| | Sbjct 180815 TTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCGATTC-CAG 180757 Query 21302 AATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGAT 21360 |||| ||||||||| ||||| || || ||||| ||||| |||||||| ||||| Sbjct 180756 CATAAGTCTATCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATTCCGAT 180697 Query 21361 CAATTTTACAGG 21372 | || ||||| Sbjct 180696 GAGCTTCACAGG 180685 >seq2 Length=18007423 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559 ||||| || || || | ||||||||||||||| | || ||||| | ||||| || || Sbjct 1941487 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 1941428 Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619 | ||| ||||| || ||||| | || |||||||| ||||| || || |||||||| || Sbjct 1941427 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCAAAGGCT 1941368 Query 21620 ACTAATCGTTCACC 21633 || | |||||||| Sbjct 1941367 ACGACACGTTCACC 1941354 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || |||||||| || | ||| ||| ||| | ||||||| | |||| Sbjct 1943298 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 1943239 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| || || || || || ||||||||||||| ||| ||| Sbjct 1943238 ATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATA 1943179 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 |||||||| ||||||||||| || Sbjct 1943178 TTCTCCATAAAGTCAAATGGATTCTC 1943153 >seq518 Length=1471901 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/199 (71%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 145456 GAATATAAAAGAGACCCTAAAAAGATG-CATAATGGAACCATAGAATTTACTAGCATCGA 145514 ||||||||| |||||| |||| |||| ||| |||| || || ||||| || |||||||| Sbjct 546107 GAATATAAAGAAGACCCCAAAA-GATGTCATGATGGCACTATTGAATTCACGAGCATCGA 546165 Query 145515 TATGCATCGTGGAGCATGCCCTTCTAGGCGAGGAGATTTAGAAATATTGGGTTATTGTAT 145574 | || ||| | ||| || || || || ||||| |||||| | |||||||| || Sbjct 546166 TGCACACAATGGCGTGGCCCCATCAAGACGTGGTGATTTGGAAATACTTGGTTATTGCAT 546225 Query 145575 GATTACTTGGTTAGGTGGTAAATTACCATGGGAGGATAATTTAAAAAATTGTAATTATG- 145633 ||| ||| | ||| | | || |||||||||||||| ||| || || |||| Sbjct 546226 GATCCAGTGGCTTACTGGCCATCTTCCTTGGGAGGATAATTTGAAAGATCCTAGATATGT 546285 Query 145634 TAATGAATTCAAAAGTAGA 145652 || || | ||||| |||| Sbjct 546286 TAGAGATTCCAAAATTAGA 546304 >seq57 Length=8566406 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 21100 TTTATTCAGCTTTATAAAAATATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATC 21159 ||||| || |||| || || | | |||||||||| ||||| || | ||| || || || Sbjct 1408660 TTTATACAATTTTAAAACAAGAGGTTTTTAAAAATCTGCATCCAAGGTGAAGACGTTGTC 1408719 Query 21160 TTCtttttttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATT 21219 | ||| || ||||| | | | ||||| || |||| ||| || || ||||| Sbjct 1408720 TGTGGTTTCTGCCATAACTGCAAAACGCTGATACTCTGAGACTCGTTTCTCAAAGAAATT 1408779 Query 21220 TGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267 ||| |||||||| || || || ||||||||||||||| |||||||| Sbjct 1408780 TGTTTTTCCTTCTAAAGAAATGTTTTCCATAAAATCAAAAGGATTTTC 1408827 >seq964 Length=126156 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 130716 AATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCAT 130775 |||||||||||| ||| ||||||||||| ||||| |||||| |||||||||||||| Sbjct 81857 AATGTCCAATTTCTTGTGTCTTCAGAAAAATAAAAACATTTACTCCCAAATCCAATCCAG 81798 Query 130776 CCCTTTGGGCAAGTAACATATTTA 130799 | |||||||||| | | || ||| Sbjct 81797 CTTTTTGGGCAAGCAGCGTACTTA 81774 >seq494 Length=1524325 Score = 82.4 bits (90), Expect = 8e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 21123 TTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCA 21182 || |||| || |||||||| || | ||| ||||||| ||| ||||||| | | ||| Sbjct 779249 TTGTTTAGAAGTCAGCATCCAAAGTAAAAGAATTATCTATTTTACTTGACATCACTGCCA 779308 Query 21183 TTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATAT 21240 | |||||||| |||| ||||| || || || || || |||||||||||| ||| || Sbjct 779309 TCTTTTGATATTCACCTACTCTCTTCTCAAAGAACTTAATCTTTCCTTCCAGTGAAAT 779366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531853221473440