Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq526 241 1e-58
seq630 215 5e-51
seq867 127 2e-24
seq2 98.7 1e-15
seq518 91.5 2e-13
seq57 91.5 2e-13
seq964 84.2 2e-11
seq494 82.4 8e-11
>seq526
Length=1402496
Score = 241 bits (266), Expect = 1e-58
Identities = 527/790 (67%), Gaps = 14/790 (2%)
Strand=Plus/Plus
Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181
|| ||||| ||||||||| | || | ||| ||| ||| | ||||||| | ||||
Sbjct 113328 TTCATTTAGAAATCAGCACCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 113387
Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241
|| | ||||| || | ||||| || || || || || ||||||||||||| ||| |||
Sbjct 113388 ATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATA 113447
Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301
|||||||| ||||||||||| || | | || | || || |||||||||| |
Sbjct 113448 TTCTCCATAAAGTCAAATGGATTCTCTATTCTGAAAACCTTGCTAAAACCCAGTTC-CAG 113506
Query 21302 AATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATC 21361
|| ||| ||||| ||||| || || ||||| ||||| |||||||| || ||
Sbjct 113507 CAT-GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATG 113565
Query 21362 AATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATT 21421
| | ||||| | || | || | ||| || |||||| || || | | | ||
Sbjct 113566 AGCTCCACAGGCAAGGCCTCAGTAAGAAACTCTTGTTCTATCCGAACAGCATTGATAGTT 113625
Query 21422 ATATTTATTA-----TCCT-AGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAA 21475
|| | | ||| |||| |||| | | ||| || ||||| |||||||
Sbjct 113626 ATTTCTCTTACTCTCTCCTCTGATGGTTT----GTGTAC--TAGGTGTTTGAACATCAGG 113679
Query 21476 CATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAA 21535
|| ||||||| | || ||||| ||||| || || | | |||| ||||||||| |
Sbjct 113680 CAAGCAAAATGTGAGTGTAAACCCTCATCTCTGCTAAAAAGGTCATGAGAAAATGTGAGG 113739
Query 21536 CCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAA 21595
|| ||||| | ||||| || || | ||| ||||| || ||||| | || |||||| |
Sbjct 113740 CCAGGCATCAGTCCTCATTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGTAG 113799
Query 21596 ATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAAT 21655
||||| || || |||||||| || || | |||||||| || |||| ||||| |||
Sbjct 113800 ATGCCTTCCACTGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCTCTTTGTCCCCA 113859
Query 21656 ATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTT 21715
||||| ||||| | |||||| | || | |||| || || ||||| || ||
Sbjct 113860 ATCCAGCGCAAGGCCCAATCTGCCTTCTTGTTGACACAAGGCATCGTTTCAATGGCATTG 113919
Query 21716 AAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATT 21775
|| ||| | |||||| ||| ||||| || |||||||
Sbjct 113920 AAGAGAAATTCCCTTTCATTGGGATCTTTTATGTAAGTGTCGATAAGGAGACCATACATT 113979
Query 21776 TCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACAT 21835
||||||||||| ||||| || || || || || || || ||||| | | |||| |
Sbjct 113980 TCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGCCTTCTGTAATC 114039
Query 21836 TGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCA 21895
|||| || |||||| | ||||||||||||||||||| |||||||| || |||
Sbjct 114040 TGAAGTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCA 114099
Query 21896 AAAAATGCCA 21905
| || ||||
Sbjct 114100 AGGAAAGCCA 114109
>seq630
Length=879232
Score = 215 bits (238), Expect = 5e-51
Identities = 520/783 (66%), Gaps = 15/783 (2%)
Strand=Plus/Plus
Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACA-TTATCTTCtttttttGACATAATTCC 21180
|| ||||| || |||||||| || || |||| | || ||| |||||| | |||
Sbjct 417474 TTCATTTAGAAGTCAGCATCCAA-GATAAAAGAATTCTCTGTGGGACTTGACACCACTCC 417532
Query 21181 CATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATAT 21240
||| | | || |||| ||||| || || || || || |||||||||||| || ||
Sbjct 417533 CATCCTCTAATGCTCACCTACTCTCTTCTCAAAGAAGTTAATCTTTCCTTCCAGTGGAAT 417592
Query 21241 AGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGA 21300
| |||||||| ||||||||||| || | | || | || || |||||||||| |
Sbjct 417593 ATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCC-A 417651
Query 21301 TAATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGA 21359
|||| ||| ||||| ||||| || || ||||| ||||| |||||||| || |
Sbjct 417652 GCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAA 417711
Query 21360 TCAATTTTACAGG-AAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACA 21418
| | || ||||| |||| || || | || | |||||| || || | | |
Sbjct 417712 TGAGCTTCACAGGCAAGATCTCA-GTGAGGAACTCCTGTTCTATCCGAACAGCATTGATA 417770
Query 21419 ATTATATTTATTA-TCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACA 21477
||||| | | || ||| | | | | | | | | || |||| ||||||| ||
Sbjct 417771 ATTATTTCTCTTTCTCCCGGCTCTGATGGTTTG-TGTACTAGGTGTTGGAACATCAGGCA 417829
Query 21478 TGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACC 21537
||||||||||| || ||||| ||||| || || | | ||||||||||||||| | ||
Sbjct 417830 AGCAAAATCACAGTGTAAACCCTCATCTCTGCTAAAAAGTTCATTAGAAAATGTGAGGCC 417889
Query 21538 GGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAAT 21597
||||| | ||||| || || | ||| ||||| || || || | || |||||||| |
Sbjct 417890 AGGCATCAGTCCTCGTTTCTTAAGCCAGAATATGGAAGCTAAAGAACCAGAAAAGAAGAC 417949
Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATAT 21657
||| || || |||||||| ||| ||||||| || |||| ||||| ||| ||
Sbjct 417950 GCCTTCCACTGCAGCAAAGGCA-------GTTCACCATAGGTAGCCTCTTTGTCCCCAAT 418002
Query 21658 CCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAA 21717
||| |||| | |||||| | || | |||| || || ||||| || || ||
Sbjct 418003 CCAGCGCAAGGCCCGGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAA 418062
Query 21718 AAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTC 21777
||| | |||| ||| |||| ||||||||||||
Sbjct 418063 GAGAAATTCCCTTTCGCTGGGATCTTTTATATACGTGTCAGTAAGGAGACTATACATTTC 418122
Query 21778 AGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTG 21837
||||||||| || || || | || || ||||| || ||||| | ||||||| | ||
Sbjct 418123 AGAATGTATGTTGTCCATGCCAATTTGGAATCCATAGAAACAGCGGGCCTCTGTAATCTG 418182
Query 21838 AACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAA 21897
||| || |||||| | ||||||||||||||||||| || ||||| || |||||
Sbjct 418183 AACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCGTCACTTGCTGCAAA 418242
Query 21898 AAA 21900
||
Sbjct 418243 GAA 418245
>seq867
Length=266704
Score = 127 bits (140), Expect = 2e-24
Identities = 181/252 (72%), Gaps = 2/252 (1%)
Strand=Plus/Minus
Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181
|| ||||| || |||||||| || | ||| ||| ||| | ||||||| | ||||
Sbjct 180935 TTCATTTAGAAGTCAGCATCCAAGGTAAAATAATTCTCTGTTGGACTTGACATCACTCCC 180876
Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241
|| | ||||| |||| ||||| ||||| || || || ||||||||||||| ||| |||
Sbjct 180875 ATCCTCTGATACTCACCTACTCTCTTTTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATA 180816
Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301
|||||||| ||||||||||| || | | || | || || ||||| ||| |
Sbjct 180815 TTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCGATTC-CAG 180757
Query 21302 AATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGAT 21360
|||| ||||||||| ||||| || || ||||| ||||| |||||||| |||||
Sbjct 180756 CATAAGTCTATCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATTCCGAT 180697
Query 21361 CAATTTTACAGG 21372
| || |||||
Sbjct 180696 GAGCTTCACAGG 180685
>seq2
Length=18007423
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559
||||| || || || | ||||||||||||||| | || ||||| | ||||| || ||
Sbjct 1941487 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 1941428
Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619
| ||| ||||| || ||||| | || |||||||| ||||| || || |||||||| ||
Sbjct 1941427 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCAAAGGCT 1941368
Query 21620 ACTAATCGTTCACC 21633
|| | ||||||||
Sbjct 1941367 ACGACACGTTCACC 1941354
Score = 93.3 bits (102), Expect = 4e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181
|| ||||| || |||||||| || | ||| ||| ||| | ||||||| | ||||
Sbjct 1943298 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 1943239
Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241
|| | ||||| || | ||||| || || || || || ||||||||||||| ||| |||
Sbjct 1943238 ATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATA 1943179
Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267
|||||||| ||||||||||| ||
Sbjct 1943178 TTCTCCATAAAGTCAAATGGATTCTC 1943153
>seq518
Length=1471901
Score = 91.5 bits (100), Expect = 2e-13
Identities = 142/199 (71%), Gaps = 3/199 (2%)
Strand=Plus/Plus
Query 145456 GAATATAAAAGAGACCCTAAAAAGATG-CATAATGGAACCATAGAATTTACTAGCATCGA 145514
||||||||| |||||| |||| |||| ||| |||| || || ||||| || ||||||||
Sbjct 546107 GAATATAAAGAAGACCCCAAAA-GATGTCATGATGGCACTATTGAATTCACGAGCATCGA 546165
Query 145515 TATGCATCGTGGAGCATGCCCTTCTAGGCGAGGAGATTTAGAAATATTGGGTTATTGTAT 145574
| || ||| | ||| || || || || ||||| |||||| | |||||||| ||
Sbjct 546166 TGCACACAATGGCGTGGCCCCATCAAGACGTGGTGATTTGGAAATACTTGGTTATTGCAT 546225
Query 145575 GATTACTTGGTTAGGTGGTAAATTACCATGGGAGGATAATTTAAAAAATTGTAATTATG- 145633
||| ||| | ||| | | || |||||||||||||| ||| || || ||||
Sbjct 546226 GATCCAGTGGCTTACTGGCCATCTTCCTTGGGAGGATAATTTGAAAGATCCTAGATATGT 546285
Query 145634 TAATGAATTCAAAAGTAGA 145652
|| || | ||||| ||||
Sbjct 546286 TAGAGATTCCAAAATTAGA 546304
>seq57
Length=8566406
Score = 91.5 bits (100), Expect = 2e-13
Identities = 121/168 (72%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 21100 TTTATTCAGCTTTATAAAAATATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATC 21159
||||| || |||| || || | | |||||||||| ||||| || | ||| || || ||
Sbjct 1408660 TTTATACAATTTTAAAACAAGAGGTTTTTAAAAATCTGCATCCAAGGTGAAGACGTTGTC 1408719
Query 21160 TTCtttttttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATT 21219
| ||| || ||||| | | | ||||| || |||| ||| || || |||||
Sbjct 1408720 TGTGGTTTCTGCCATAACTGCAAAACGCTGATACTCTGAGACTCGTTTCTCAAAGAAATT 1408779
Query 21220 TGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267
||| |||||||| || || || ||||||||||||||| ||||||||
Sbjct 1408780 TGTTTTTCCTTCTAAAGAAATGTTTTCCATAAAATCAAAAGGATTTTC 1408827
>seq964
Length=126156
Score = 84.2 bits (92), Expect = 2e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 130716 AATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCAT 130775
|||||||||||| ||| ||||||||||| ||||| |||||| ||||||||||||||
Sbjct 81857 AATGTCCAATTTCTTGTGTCTTCAGAAAAATAAAAACATTTACTCCCAAATCCAATCCAG 81798
Query 130776 CCCTTTGGGCAAGTAACATATTTA 130799
| |||||||||| | | || |||
Sbjct 81797 CTTTTTGGGCAAGCAGCGTACTTA 81774
>seq494
Length=1524325
Score = 82.4 bits (90), Expect = 8e-11
Identities = 89/118 (75%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 21123 TTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCA 21182
|| |||| || |||||||| || | ||| ||||||| ||| ||||||| | | |||
Sbjct 779249 TTGTTTAGAAGTCAGCATCCAAAGTAAAAGAATTATCTATTTTACTTGACATCACTGCCA 779308
Query 21183 TTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATAT 21240
| |||||||| |||| ||||| || || || || || |||||||||||| ||| ||
Sbjct 779309 TCTTTTGATATTCACCTACTCTCTTCTCAAAGAACTTAATCTTTCCTTCCAGTGAAAT 779366
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531853221473440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |