Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq25 96.9 3e-15 seq434 87.8 2e-12 seq93 84.2 2e-11 >seq25 Length=15232693 Score = 96.9 bits (106), Expect = 3e-15 Identities = 105/136 (77%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 || || ||||| || ||||| ||||| |||||||| || || | ||||| ||||| ||| Sbjct 12145374 GATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTATGCTGGCAAGCAACTAGAA 12145315 Query 26922 GATG-ATAGAAAC-GTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCC 26979 |||| || | | ||| | |||| ||||||||||| || |||||| | |||||||| | Sbjct 12145314 GATGGATGTACTCTGTCTG--ACTACAACATTCAAAAGGAGTCTACTCTTCATCTGGTGC 12145257 Query 26980 TGAGACTTAGAGGAGG 26995 |||||||| | || || Sbjct 12145256 TGAGACTTCGTGGTGG 12145241 >seq434 Length=1819716 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||||||||| | || || ||||| | || || || | |||||| |||| | ||| | Sbjct 1331512 CAAAATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACC 1331453 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 || || || || | || || ||||| || || ||||| || ||||| || Sbjct 1331452 CTCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 1331393 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 ||| |||||||| || | | ||||| ||||| ||||||| | | | ||||| Sbjct 1331392 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 1331333 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||| || || |||||| | ||||| || |||||||| | || || Sbjct 1331332 TAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 1331282 >seq93 Length=13160294 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 || || ||||| || ||||| ||||| |||||||| || | | ||||| ||||| ||| Sbjct 4738477 GATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAA 4738418 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| | | | | ||||| ||||||||||| || |||||| | ||||| || || Sbjct 4738417 GATGGTTGTACTTTGCCTGACTACAACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTG 4738358 Query 26982 AGACTT 26987 |||||| Sbjct 4738357 AGACTT 4738352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478619583648320