Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq526 105 2e-17
seq2 87.8 5e-12
seq630 84.2 6e-11
>seq526
Length=1402496
Score = 105 bits (116), Expect = 2e-17
Identities = 333/506 (66%), Gaps = 14/506 (3%)
Strand=Plus/Minus
Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGGAA 22491
|| || |||||||||||||| || ||||| | |||| || | | | | |||
Sbjct 113891 AACAAGAAGGCAGATTGGGCCTTGCGCTGGATTGGGGACAAAGAGGCTACCTATGGTGAA 113832
Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551
|| || | || ||||||| || |||||||| | ||||||||| | ||| | ||
Sbjct 113831 CGCGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTACTTTTCTGGTTCTTTTGCATCCATA 113772
Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611
|| ||||| || ||| | | | | ||||| || || || ||||| |||| | |||||
Sbjct 113771 TTCTGGCTCAAGAAATGAGGACTGATGCCTGGCCTCACATTTTCTCATGACCTTTTTAGC 113712
Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCAT 22671
||||||||||| | || | ||||||| || || | | || || || | | ||
Sbjct 113711 AGAGATGAGGGTTTACACTCACATTTTGCTTGCCTGATGT-TC--AAACACCTAGTACAC 113655
Query 22672 AAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTA 22731
|||| || | || | ||| || || | || ||||| ||| | ||||
Sbjct 113654 AAACCATCAGAGGAGAGAGTAAGAGAAATAACTATCAATGCTGTTCGGATAGAACAAGAG 113595
Query 22732 TTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATC-AATGAGTAC 22790
||| || ||||| || || || |||||||| || ||| | | || |||||
Sbjct 113594 TTTCTTACTGAGGCCTTGCCTGTGGAGCTCATTGGGATGAATTGC-ACTCTAATGAAGCA 113536
Query 22791 ATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTAT-GCAAAGCATT-AT 22848
||| ||| | ||||| ||||| | | | | ||| |||| | |||| | || |
Sbjct 113535 ATACATTGAGTTTGTGGCAGACAGAC--ATGCTGGAACTGGGTTTTAGCAAGGTTTTCAG 113478
Query 22849 AACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTC 22908
|| | | ||||||||||| | ||||| ||||||||| ||||||||||| || |||
Sbjct 113477 AA--TAGAGAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGAAAGACTAACTTC 113420
Query 22909 TTCGAAAAAAGAGTTGGTGAATACCA 22934
|| || || ||||| || || || ||
Sbjct 113419 TTTGAGAAGAGAGTAGGCGAGTATCA 113394
>seq2
Length=18007423
Score = 87.8 bits (96), Expect = 5e-12
Identities = 99/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548
|||||| | | || ||||||| || |||||||| ||||||||||| | ||| |
Sbjct 1941357 GAACGTGTCGTAGCCTTTGCTGCAGTAGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCC 1941416
Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608
|| || ||||| || ||||| | | | ||||| || || || ||||| ||||| | |||
Sbjct 1941417 ATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATT 1941476
Query 22609 AGCCGAGATGAGG 22621
||| |||||||||
Sbjct 1941477 AGCAGAGATGAGG 1941489
>seq630
Length=879232
Score = 84.2 bits (92), Expect = 6e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 22500 TGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCT 22559
||| ||||||| || |||||| | ||||||||||| | || | | || || |||||
Sbjct 417971 TGCCTTTGCTGCAGTGGAAGGCGTCTTCTTTTCTGGTTCTTTAGCTTCCATATTCTGGCT 417912
Query 22560 aaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGA 22619
|| ||||| | | | ||||| || || || ||||| ||||| | ||||| |||||||
Sbjct 417911 TAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTTTTAGCAGAGATGA 417852
Query 22620 GGGTCTTCATACCGATTTTGCGTG 22643
|||| | || |||||||| ||
Sbjct 417851 GGGTTTACACTGTGATTTTGCTTG 417828
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303234100395992
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |