Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq526 105 2e-17 seq2 87.8 5e-12 seq630 84.2 6e-11 >seq526 Length=1402496 Score = 105 bits (116), Expect = 2e-17 Identities = 333/506 (66%), Gaps = 14/506 (3%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGGAA 22491 || || |||||||||||||| || ||||| | |||| || | | | | ||| Sbjct 113891 AACAAGAAGGCAGATTGGGCCTTGCGCTGGATTGGGGACAAAGAGGCTACCTATGGTGAA 113832 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 || || | || ||||||| || |||||||| | ||||||||| | ||| | || Sbjct 113831 CGCGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTACTTTTCTGGTTCTTTTGCATCCATA 113772 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 || ||||| || ||| | | | | ||||| || || || ||||| |||| | ||||| Sbjct 113771 TTCTGGCTCAAGAAATGAGGACTGATGCCTGGCCTCACATTTTCTCATGACCTTTTTAGC 113712 Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCAT 22671 ||||||||||| | || | ||||||| || || | | || || || | | || Sbjct 113711 AGAGATGAGGGTTTACACTCACATTTTGCTTGCCTGATGT-TC--AAACACCTAGTACAC 113655 Query 22672 AAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTA 22731 |||| || | || | ||| || || | || ||||| ||| | |||| Sbjct 113654 AAACCATCAGAGGAGAGAGTAAGAGAAATAACTATCAATGCTGTTCGGATAGAACAAGAG 113595 Query 22732 TTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATC-AATGAGTAC 22790 ||| || ||||| || || || |||||||| || ||| | | || ||||| Sbjct 113594 TTTCTTACTGAGGCCTTGCCTGTGGAGCTCATTGGGATGAATTGC-ACTCTAATGAAGCA 113536 Query 22791 ATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTAT-GCAAAGCATT-AT 22848 ||| ||| | ||||| ||||| | | | | ||| |||| | |||| | || | Sbjct 113535 ATACATTGAGTTTGTGGCAGACAGAC--ATGCTGGAACTGGGTTTTAGCAAGGTTTTCAG 113478 Query 22849 AACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTC 22908 || | | ||||||||||| | ||||| ||||||||| ||||||||||| || ||| Sbjct 113477 AA--TAGAGAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGAAAGACTAACTTC 113420 Query 22909 TTCGAAAAAAGAGTTGGTGAATACCA 22934 || || || ||||| || || || || Sbjct 113419 TTTGAGAAGAGAGTAGGCGAGTATCA 113394 >seq2 Length=18007423 Score = 87.8 bits (96), Expect = 5e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 |||||| | | || ||||||| || |||||||| ||||||||||| | ||| | Sbjct 1941357 GAACGTGTCGTAGCCTTTGCTGCAGTAGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCC 1941416 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || || ||||| || ||||| | | | ||||| || || || ||||| ||||| | ||| Sbjct 1941417 ATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATT 1941476 Query 22609 AGCCGAGATGAGG 22621 ||| ||||||||| Sbjct 1941477 AGCAGAGATGAGG 1941489 >seq630 Length=879232 Score = 84.2 bits (92), Expect = 6e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 22500 TGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCT 22559 ||| ||||||| || |||||| | ||||||||||| | || | | || || ||||| Sbjct 417971 TGCCTTTGCTGCAGTGGAAGGCGTCTTCTTTTCTGGTTCTTTAGCTTCCATATTCTGGCT 417912 Query 22560 aaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGA 22619 || ||||| | | | ||||| || || || ||||| ||||| | ||||| ||||||| Sbjct 417911 TAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTTTTAGCAGAGATGA 417852 Query 22620 GGGTCTTCATACCGATTTTGCGTG 22643 |||| | || |||||||| || Sbjct 417851 GGGTTTACACTGTGATTTTGCTTG 417828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303234100395992