Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq4 113 4e-20 seq573 104 2e-17 seq434 104 2e-17 seq72 104 2e-17 seq290 102 7e-17 seq181 100 2e-16 seq69 100 2e-16 seq25 98.7 8e-16 seq292 89.7 4e-13 seq118 87.8 2e-12 seq93 87.8 2e-12 seq53 87.8 2e-12 seq34 87.8 2e-12 seq64 84.2 2e-11 seq83 82.4 6e-11 seq19 82.4 6e-11 >seq4 Length=15321207 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| ||||| || ||||| || ||||| || ||||| ||| |||| || || Sbjct 5242993 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATAACCCTCGAGGTTGAACCC 5243052 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | ||||| ||||| ||||| ||||| | || |||| Sbjct 5243053 TCGGAAACGATAGAAAATGTAAAGGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGAT 5243112 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| || | ||| ||||| ||| | ||||||| || || | || || Sbjct 5243113 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 5243172 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||| || ||||||||| | ||| | ||||||||||| || || || Sbjct 5243173 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGATTTCGTGGTGG 5243222 >seq573 Length=1150292 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| ||||| || ||||| || ||||| || ||||| ||| |||| || || Sbjct 200699 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 200640 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | ||||| || || ||||| ||||| | || |||| Sbjct 200639 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 200580 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| || | ||| ||||| ||| | ||||||| || || | || || Sbjct 200579 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 200520 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||| || ||||||||| | ||| | ||||||||| | || || || Sbjct 200519 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 200470 >seq434 Length=1819716 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| ||||| || ||||| || || || || ||||| ||| |||| || || Sbjct 1331511 AAAATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACCC 1331452 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | ||||| || || ||||| ||||| | || |||| Sbjct 1331451 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 1331392 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| || | ||| ||||| ||| | ||||||| || || | || ||| Sbjct 1331391 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAT 1331332 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||| || ||||||||| | ||| | ||||||||| | || || || Sbjct 1331331 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 1331282 >seq72 Length=7750101 Score = 104 bits (114), Expect = 2e-17 Identities = 158/224 (71%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAA-ACCATTACCGTCGAAACGGAGTC 115341 |||||||| |||||||| ||||| || ||||| ||| ||||||||| |||| || | Sbjct 2356206 AAAATGCAGATTTTTGTGAAAACTCTTACGGGGAAAGACCATTACCCTCGAGGTTGAACC 2356147 Query 115342 CAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 | || || | | | | ||||| ||||| ||||| ||||| | || ||| Sbjct 2356146 CTCGGATACGATAGAAAATGTAAAGGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGA 2356087 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 |||||||||||| || | ||| ||||| | | ||||||| || | | || || Sbjct 2356086 TCAGCAAAGACTGATCTTTGCTGGCAAGACACTGGAAGATGGACGCACTTTATCTGACTA 2356027 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGC 115505 |||||||| || ||||||||| | ||| | ||||||||| ||| Sbjct 2356026 CAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGACTGC 2355983 >seq290 Length=2922102 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 115284 AAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCA 115343 ||||||| |||||||| ||||| || | ||| || ||||| ||| |||| | || | Sbjct 1757769 AAATGCAGATTTTTGTGAAAACCCTTATGGGGAAGACCATCACCCTCGAGGCTGAACCTT 1757710 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 || || | | | | ||||| || || ||||||||||| | || ||||| Sbjct 1757709 CGGATACGATAGAAAATGTAAAGTCCAAGATCCAGGATAAAGAAGGAATTCCTTGTGATC 1757650 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 ||||||| || || | ||| ||||| ||| | ||||||| || || | || || | Sbjct 1757649 AGCAAAGGCTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACA 1757590 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||||| ||||||| | | ||| | ||||||||| | || || || Sbjct 1757589 ACATTCAAAAGGAGTCTATTCTTCATCTTGTGTTGAGACTTCGTGGTGG 1757541 >seq181 Length=4179193 Score = 100 bits (110), Expect = 2e-16 Identities = 163/234 (70%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| ||||| || ||||| || ||||| || ||||| ||| |||| || || Sbjct 2580696 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 2580637 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGG----CGTCCCCGT 115398 || || | | | | ||||| || || ||||| ||||| ||||| Sbjct 2580636 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCGTCC---- 2580581 Query 115399 TGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGA 115458 ||||||||||||||| || | ||| ||||| ||| | ||||||| || || | || Sbjct 2580580 TGATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGA 2580521 Query 115459 TTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || |||||||| || ||||||||| | ||| | ||||||||| | || || || Sbjct 2580520 CTACAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 2580467 >seq69 Length=11786368 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| ||||| || ||||| || || || || ||||| | | |||| || || Sbjct 9297008 AAAATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCAACCTCGAGGTTGAACCC 9297067 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || ||| | | | ||||| || || ||||| |||||| | || |||| Sbjct 9297068 TTGGATACTACAGAAAATGTAAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCTGAT 9297127 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| || | ||| ||||| ||| | ||||||| || || | || || Sbjct 9297128 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGAGGTACTTTGTCTGACTAC 9297187 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||| || ||||||||| | ||| | ||||||||| | || || || Sbjct 9297188 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 9297237 >seq25 Length=15232693 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| ||||| | || ||||||||||||||| || ||||| ||||| ||| ||||| Sbjct 12145374 GATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTATGCTGGCAAGCAACTAGAA 12145315 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| || || | || || ||||||||||| ||||||||| | ||| ||||| || Sbjct 12145314 GATGGATGTACTCTGTCTGACTACAACATTCAAAAGGAGTCTACTCTTCATCTGGTGCTG 12145255 Query 115499 AGATTGCGAGGAGG 115512 ||| | || || || Sbjct 12145254 AGACTTCGTGGTGG 12145241 >seq292 Length=4239571 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| ||||| || ||||| || ||||| || ||||| ||| |||| || || Sbjct 2944190 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 2944131 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | ||||| || || ||||| ||||| | || |||| Sbjct 2944130 TCGGATACGATAGAAAATGTAAAGGTCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 2944071 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| || | ||| ||||| || | ||| ||| || || | || || Sbjct 2944070 CAGCAAAGACTGATCTTTGCTGGCAAGGAACTGGAATATGGACGCACTTTGTCTGACTAC 2944011 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGA 115501 || ||||| || ||||||||| | ||| | ||||||||| Sbjct 2944010 AATATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGA 2943972 >seq118 Length=10303814 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||||||||| || || ||||||| ||||||| |||| ||| ||||| ||| | ||| Sbjct 8799420 GATAAAGAAGGAGTTCCTCCTGATCAGTAAAGACTGATTTTTGCTGGCAAGCAACTGGAA 8799361 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 ||| | || || | || | |||||||| || ||||||||| | ||| | |||||| Sbjct 8799360 GATATGCATACTCTGCCTGACTGCAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTG 8799301 Query 115499 AGA 115501 ||| Sbjct 8799300 AGA 8799298 >seq93 Length=13160294 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| ||||| | || ||||||||||||||| || | ||| ||||| ||| | ||| Sbjct 4738477 GATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAA 4738418 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| || || | || || ||||||||||| ||||||||| | ||| | |||||| Sbjct 4738417 GATGGTTGTACTTTGCCTGACTACAACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTG 4738358 Query 115499 AGA 115501 ||| Sbjct 4738357 AGA 4738355 >seq53 Length=8749341 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| |||||||| ||||| || || || || ||||| ||| |||| || || Sbjct 1284993 AAAATGCAGATTTTTGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAAACC 1284934 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | ||||| || || ||||| ||||| | | |||| Sbjct 1284933 TTGGAAACGATAGAAGATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCTTCCTGAT 1284874 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| || | ||| |||| ||| | ||||||| || || | || || Sbjct 1284873 CAGCAAAGACTGATCTTTGCTGGCAGGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 1284814 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAG 115500 | |||||| || ||||||||| | ||| | |||||||| Sbjct 1284813 AGCATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAG 1284776 >seq34 Length=10557659 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| |||||||| ||||| | || ||| || | ||| ||| |||| || ||| Sbjct 1465526 AAAATGCAGATTTTTGTGAAAACCCCCATGGGGAAGATCATCACCCTCGAGGTTGAATCC 1465585 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | ||||| || || ||||| ||||| | || |||| Sbjct 1465586 TCCGGTACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 1465645 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||| ||||||| || | ||| ||||| ||| | ||||||| | || || | || Sbjct 1465646 CAGGAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACATACTTTGAC----TAC 1465701 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGA 115501 ||||||||||| ||||||| | | ||| | |||| |||| Sbjct 1465702 AACATTCAAAAGGAGTCTAGTCTTCATCTTGTGTCGAGA 1465740 >seq64 Length=8039362 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| ||||| | || ||||||||||||||| || | ||| ||||| ||| | ||| Sbjct 5682384 GATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTCTGCTGGCAAGCAACTGGAA 5682443 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| || || | || || |||||||| || ||||||||| | ||| | |||||| Sbjct 5682444 GATGGACGTACTTTGTCTGACTACAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTG 5682503 Query 115499 AGATTGCGAGG 115509 ||| | || || Sbjct 5682504 AGACTTCGTGG 5682514 >seq83 Length=10167762 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| ||||| |||| ||||||||||||||| || | ||| ||||| ||| | ||| Sbjct 3734430 GATAAGGAAGGAATCCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAA 3734371 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| | | || | || || || |||||||| ||||||||| | ||| | ||||| Sbjct 3734370 GATGGACATATTTTGTCTGACTACAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTC 3734311 Query 115499 AGA 115501 ||| Sbjct 3734310 AGA 3734308 >seq19 Length=20362211 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||||||||| | || ||||||||||||||| || | ||| ||||| ||| | ||| Sbjct 6160438 GATAAAGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAA 6160497 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 || | || || | || || ||||||||||| |||| |||| | ||| | |||||| Sbjct 6160498 GACGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTTTACTCTTCATCTTGTGTTG 6160557 Query 115499 AGA 115501 ||| Sbjct 6160558 AGA 6160560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425306904154720