Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq170 98.7 8e-16
seq38 98.7 8e-16
seq407 87.8 1e-12
seq231 87.8 1e-12
seq683 84.2 2e-11
>seq170
Length=4466143
Score = 98.7 bits (108), Expect = 8e-16
Identities = 161/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| ||||| || | || |||| || || |||||||| ||||| ||||||||||| | |
Sbjct 3883229 CCCCCTCGGAGACGGAGGACCAGGTGAAGGGTGGACTCTTTTTGGATGTTGTAGTCAGAC 3883288
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | || |||| || || || ||| | || | || ||| ||||| |||
Sbjct 3883289 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 3883348
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||| || ||||| || ||||| ||| || | | | ||||| | |||||||
Sbjct 3883349 ATGCCTTCCTTGTCCTGGATCTTTGC--CTTGACGTTCTCAATGGTGTCACTGGGCTCCA 3883406
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936
|| | ||||||||| || |||||||| || || || || |||||||||
Sbjct 3883407 CCTCGAGGGTGATGGTCTTGCCGGTCAGTGTCTTCACGAAGATCTGCATT 3883456
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/216 (70%), Gaps = 4/216 (2%)
Strand=Plus/Plus
Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782
||| |||| ||||| ||||||||||| || ||||||||||| | | ||| | ||
Sbjct 3883015 CAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGTGCGCCCATC 3883074
Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842
|||| ||||| || ||| | || | | ||| ||||| ||| | ||| || |||||
Sbjct 3883075 TTCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTC 3883134
Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900
|| || || ||| || | | | ||||| | ||||||| || | |||||||
Sbjct 3883135 TTGGATCTTGGC--CTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATG 3883192
Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936
|| || |||||||| || || || || |||||||||
Sbjct 3883193 GTCTTACCGGTCAGGGTCTTCACGAAGATCTGCATT 3883228
>seq38
Length=10264441
Score = 98.7 bits (108), Expect = 8e-16
Identities = 161/229 (70%), Gaps = 5/229 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| ||||| || | ||| |||| ||||| |||||||| || || ||||||||||| |
Sbjct 9540872 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 9540813
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | | | ||||||| |||||||| ||| | || || ||||| ||||| ||
Sbjct 9540812 AGTGTGTGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 9540753
Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||||| ||||| ||||| ||| || || | | | ||||| |||||||
Sbjct 9540752 ATACCCTCCTTGTCTTGAATTTTGGCT--TTGACATTCTCAATGGTGTC-ACGGGCTCGA 9540696
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | ||||||||| || || | || || || ||||| ||||||||
Sbjct 9540695 CCTCAAGGGTGATGGTCTTGCCCATGAGGGTCTTCACAAAGATCTGCAT 9540647
>seq407
Length=3256691
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/231 (69%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| ||||| || | ||| |||| ||||| |||||||| || || ||||||||||| |
Sbjct 904219 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 904278
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | | ||||||| || | || ||| | || || ||||| ||||| ||
Sbjct 904279 AGCGTGCGGCCATCCTCCAGCTGCTGGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGG 904338
Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||||| ||||| ||||| ||| || || | | | ||||| ||||||
Sbjct 904339 ATACCCTCCTTGTCTTGAATTTTGGCT--TTGACATTCTCAATGGTGTCATTGGGCTCGA 904396
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTT 16937
|| | ||||||||| || || || || || || ||||| ||||||||||
Sbjct 904397 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATTT 904447
>seq231
Length=3498576
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
||||||| || || |||||||| ||||| ||||||||||| | || ||| | | ||
Sbjct 69571 AGTACCAGATATAGAGTGGACTCTTTTTGGATGTTGTAGTCAGACAGGGTGTGCCCATCT 69630
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|||| || || || ||| | || | || | | ||||| ||| | ||| || |||||
Sbjct 69631 TCCAGCTGCTTTCCAGCAAAGATCAACCTCCGCTGGTCAGGAGGGATGCCTTCCTTGTCC 69690
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| ||||| ||| || | | | ||||| | |||||| || | ||||||||
Sbjct 69691 TGGATCTTTGC--CTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGG 69748
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| || || ||||| || || || || ||||||||
Sbjct 69749 TCTTACCAGTCAGGGTCTTCACTAATATCTGCAT 69782
>seq683
Length=714717
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| ||||| || | ||| |||| ||||| |||||||| || || ||||||||||| |
Sbjct 111376 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 111435
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | | ||||||| | ||| || ||| | || || ||||| || || ||
Sbjct 111436 AGCGTGCGGCCATCCTCCAGCTATTTACCGGCAAATATCAGACGCTGCTGATCAGGTGGG 111495
Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||||| ||||| ||||| ||| || || | | | ||||| | ||||||
Sbjct 111496 ATACCCTCCTTGTCTTGAATTTTGGCT--TTAACATTCTCAATGGTGTCACTGGGCTCGA 111553
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | ||||||||| || || | || || || ||||| ||||||||
Sbjct 111554 CCTCAAGGGTGATGGTCTTGCCCATGAGGGTCTTCACAAAGATCTGCAT 111602
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405052670756440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |