Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq170 98.7 8e-16 seq38 98.7 8e-16 seq407 87.8 1e-12 seq231 87.8 1e-12 seq683 84.2 2e-11 >seq170 Length=4466143 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | || |||| || || |||||||| ||||| ||||||||||| | | Sbjct 3883229 CCCCCTCGGAGACGGAGGACCAGGTGAAGGGTGGACTCTTTTTGGATGTTGTAGTCAGAC 3883288 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||| || || || ||| | || | || ||| ||||| ||| Sbjct 3883289 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 3883348 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || ||||| ||| || | | | ||||| | ||||||| Sbjct 3883349 ATGCCTTCCTTGTCCTGGATCTTTGC--CTTGACGTTCTCAATGGTGTCACTGGGCTCCA 3883406 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | ||||||||| || |||||||| || || || || ||||||||| Sbjct 3883407 CCTCGAGGGTGATGGTCTTGCCGGTCAGTGTCTTCACGAAGATCTGCATT 3883456 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| ||||||||||| || ||||||||||| | | ||| | || Sbjct 3883015 CAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGTGCGCCCATC 3883074 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| ||||| || ||| | || | | ||| ||||| ||| | ||| || ||||| Sbjct 3883075 TTCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTC 3883134 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || ||| || | | | ||||| | ||||||| || | ||||||| Sbjct 3883135 TTGGATCTTGGC--CTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATG 3883192 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || || |||||||| || || || || ||||||||| Sbjct 3883193 GTCTTACCGGTCAGGGTCTTCACGAAGATCTGCATT 3883228 >seq38 Length=10264441 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/229 (70%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | ||| |||| ||||| |||||||| || || ||||||||||| | Sbjct 9540872 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 9540813 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | | ||||||| |||||||| ||| | || || ||||| ||||| || Sbjct 9540812 AGTGTGTGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 9540753 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| ||||| ||| || || | | | ||||| ||||||| Sbjct 9540752 ATACCCTCCTTGTCTTGAATTTTGGCT--TTGACATTCTCAATGGTGTC-ACGGGCTCGA 9540696 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || | || || || ||||| |||||||| Sbjct 9540695 CCTCAAGGGTGATGGTCTTGCCCATGAGGGTCTTCACAAAGATCTGCAT 9540647 >seq407 Length=3256691 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | ||| |||| ||||| |||||||| || || ||||||||||| | Sbjct 904219 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 904278 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| || | || ||| | || || ||||| ||||| || Sbjct 904279 AGCGTGCGGCCATCCTCCAGCTGCTGGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGG 904338 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| ||||| ||| || || | | | ||||| |||||| Sbjct 904339 ATACCCTCCTTGTCTTGAATTTTGGCT--TTGACATTCTCAATGGTGTCATTGGGCTCGA 904396 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTT 16937 || | ||||||||| || || || || || || ||||| |||||||||| Sbjct 904397 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATTT 904447 >seq231 Length=3498576 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||||| || || |||||||| ||||| ||||||||||| | || ||| | | || Sbjct 69571 AGTACCAGATATAGAGTGGACTCTTTTTGGATGTTGTAGTCAGACAGGGTGTGCCCATCT 69630 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || || || ||| | || | || | | ||||| ||| | ||| || ||||| Sbjct 69631 TCCAGCTGCTTTCCAGCAAAGATCAACCTCCGCTGGTCAGGAGGGATGCCTTCCTTGTCC 69690 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| ||| || | | | ||||| | |||||| || | |||||||| Sbjct 69691 TGGATCTTTGC--CTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGG 69748 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || || || || |||||||| Sbjct 69749 TCTTACCAGTCAGGGTCTTCACTAATATCTGCAT 69782 >seq683 Length=714717 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | ||| |||| ||||| |||||||| || || ||||||||||| | Sbjct 111376 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 111435 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| | ||| || ||| | || || ||||| || || || Sbjct 111436 AGCGTGCGGCCATCCTCCAGCTATTTACCGGCAAATATCAGACGCTGCTGATCAGGTGGG 111495 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| ||||| ||| || || | | | ||||| | |||||| Sbjct 111496 ATACCCTCCTTGTCTTGAATTTTGGCT--TTAACATTCTCAATGGTGTCACTGGGCTCGA 111553 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || | || || || ||||| |||||||| Sbjct 111554 CCTCAAGGGTGATGGTCTTGCCCATGAGGGTCTTCACAAAGATCTGCAT 111602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405052670756440