Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq585 98.7 9e-16 seq1 98.7 9e-16 seq41 95.1 1e-14 seq407 91.5 1e-13 seq351 89.7 4e-13 seq38 89.7 4e-13 seq487 84.2 2e-11 seq112 82.4 7e-11 >seq585 Length=1056956 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| ||||| ||||| | | || |||||| | | Sbjct 519107 ATGCAGATCTTCGTGAAGACACTGACTGGTAAGACCATCGCCCTTGAGGTGGAGCCCAGT 519048 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| ||| ||| ||||| ||||| | || |||||||| Sbjct 519047 GACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCACCCCTCCTGACCAG 518988 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | || |||||| | ||||| | ||||||| ||||| || || ||||| Sbjct 518987 TAGAGATTGATCTTTGCCTGGAAACAGCTGGAAGATGGGCGCACCTTGTCTGACTACAAC 518928 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || ||||| ||||||||||| | || || | || |||| |||| Sbjct 518927 ATCCAGAAAGAGTCCACGCTACACCTGGTTCTCCGTCTCCGAGGTGGAA 518879 >seq1 Length=21314971 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/215 (71%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | || || || ||||||| | || || ||| | | Sbjct 18630932 ATGCAGATCTTTGTGAAGACTGTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 18630991 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || | || |||| |||| ||| | |||| ||||| || ||||||||| Sbjct 18630992 GACACCATTAAG--AATGTCAAAGCCAAAATTCAAT-ACAAGGAAGGTATCCCACCTGAC 18631048 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || ||||| || ||||| | || |||| |||||| | || ||| Sbjct 18631049 CAGCAGCGTCTGATATTTGCTGGTAAACAGCTGGAGGATGGCCGCACTCT--CAGACTAC 18631106 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| ||||| || || | ||||| Sbjct 18631107 AACATCCAGAAAGAGTCCACCCTGCACCTGGTGCT 18631141 >seq41 Length=9995516 Score = 95.1 bits (104), Expect = 1e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 |||||||| || || || |||||| |||| || || ||||||| |||| || ||| | Sbjct 7312092 ACAATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCC 7312151 Query 25056 TCTGACACTATCGAGTCACTG-AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||| || ||| || | ||| ||| ||| ||||||||||| || || ||||| Sbjct 7312152 GGTGACACCATTGAGA-ACGGCAAGGCAAAGATCCAGGACAAAGAAGGCATCCCTCCTGA 7312210 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| | || ||||| || ||||| | ||||||| |||| | || || Sbjct 7312211 CCAGCAGAGATCCATCTTTGCTGGGAAACAGCTGGAAGATGGATGCACCCTATCTGACTA 7312270 Query 25175 CAATATTCAAAAAGAATCCAC 25195 ||| || || ||||| ||||| Sbjct 7312271 CAACATCCAGAAAGAGTCCAC 7312291 >seq407 Length=3256691 Score = 91.5 bits (100), Expect = 1e-13 Identities = 166/239 (69%), Gaps = 7/239 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| | || || || ||||||| | || || ||| | Sbjct 904446 AATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAA 904387 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||| || ||| | || |||| |||| ||| ||||| || || || |||||||| Sbjct 904386 TGACACCATTGAG--AATGTCAAAGCCAAAATTCAA-GACAAGGAGGGTATCCCACCTGA 904330 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || |||||| || | || | || |||| ||||| | || || Sbjct 904329 CCAGCAGCGTCTGATATTTGCCAGCCAGCAGCTGGAGGATGGCCGCACGCTCTCAGACTA 904270 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTATT 25233 ||| || || ||||| ||||| || || | ||||| | || |||| || |||||| Sbjct 904269 CAACATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGAGGTGG-CATTATT 904212 >seq351 Length=2412480 Score = 89.7 bits (98), Expect = 4e-13 Identities = 165/238 (69%), Gaps = 7/238 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||| |||| ||||| |||| | | || || ||||||| | || || ||||| | Sbjct 786113 ATGTAAATCTTTGTGAAGATACTCATGGGCAAGACCATCACCCTTGAGGTCGAGTCCAGT 786172 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| | ||| | || |||| |||| ||| |||||||| || || |||||||| Sbjct 786173 GACACCACTGAG--AATGTCAAAGCCAAAATTCAA-GACAAAGAGGGTATCTCACCTGAC 786229 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | | || |||||||||||| | | || |||| |||||| | || ||| Sbjct 786230 CAGCAGTGTCTGATCTTTGCCGGCAAAGAGATGGAGGATGGCCGCACTCTCTCAGACTAC 786289 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTATT 25233 || || || ||||| ||||| || || | ||||| | || |||| || |||||| Sbjct 786290 AACATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGTGCCTGCGAGGTGG-CATTATT 786346 >seq38 Length=10264441 Score = 89.7 bits (98), Expect = 4e-13 Identities = 166/238 (70%), Gaps = 8/238 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | | || || ||||||| | || || ||| | | Sbjct 9540647 ATGCAGATCTTTGTGAAGACCCTCATGGGCAAGACCATCACCCTTGAGGTCGAGCCCG-T 9540705 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || ||| | || |||| |||| ||| ||||| || || || ||||||||| Sbjct 9540706 GACACCATTGAG--AATGTCAAAGCCAAAATTCAA-GACAAGGAGGGTATCCCACCTGAC 9540762 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || |||||||||||||| | || |||| | ||| | || ||| Sbjct 9540763 CAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAGGATGGCCACACACTCTCAGACTAC 9540822 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTATT 25233 || || || ||||| ||||| || || | ||||| | || |||| || |||||| Sbjct 9540823 AACATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGAGGTGG-CATTATT 9540879 >seq487 Length=2137387 Score = 84.2 bits (92), Expect = 2e-11 Identities = 164/238 (69%), Gaps = 7/238 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || | ||| ||||| | || ||||| ||||||| | || || ||| | | Sbjct 1405447 ATGCAGATCTCTGTGAAGACCCTCACGGGTAAGACCATCACCCTTGAGGTCGAGCCCAGT 1405388 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || ||| | || || | |||| ||| ||||| | || || ||||||||| Sbjct 1405387 GACACCATTGAG--AATGTTAAATCCAAAATTCAA-GACAAGGTGGGTATCCCACCTGAC 1405331 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | | || ||||||||| |||| | || |||| ||||| | || ||| Sbjct 1405330 CAGCAGTGTCTGATATTTGCCGGCCAACAGCTGGAGGATGGCCGCACGCTCTCAGACTAC 1405271 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTATT 25233 || || || ||||| ||||| || || | ||||| | || |||| || |||||| Sbjct 1405270 AACATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGAGG-TGACATTATT 1405214 >seq112 Length=6082587 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 |||||||| || || || ||| || |||| || || ||||||| | || | ||| | Sbjct 2083892 ACAATGCAGATCTTCGTGAAGGCTCTGACTGGCAAGACCATCACCCTTGAGATTGAGCCA 2083833 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||| || ||| | ||| ||| ||| ||||| ||||| || || |||||| Sbjct 2083832 AGTGACACCATTGAGAATGTCAAGGCAAATATCCAGGACAAGGAAGGCATCCCTCCTGAC 2083773 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155 |||||| || | || ||||| || ||||| | ||||||| Sbjct 2083772 CAACAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATG 2083733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433290207840140