Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq585 98.7 9e-16
seq1 98.7 9e-16
seq41 95.1 1e-14
seq407 91.5 1e-13
seq351 89.7 4e-13
seq38 89.7 4e-13
seq487 84.2 2e-11
seq112 82.4 7e-11
>seq585
Length=1056956
Score = 98.7 bits (108), Expect = 9e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| |||| ||||| ||||| | | || |||||| | |
Sbjct 519107 ATGCAGATCTTCGTGAAGACACTGACTGGTAAGACCATCGCCCTTGAGGTGGAGCCCAGT 519048
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || ||| | ||| ||| ||| ||||| ||||| | || ||||||||
Sbjct 519047 GACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCACCCCTCCTGACCAG 518988
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
|| | | || |||||| | ||||| | ||||||| ||||| || || |||||
Sbjct 518987 TAGAGATTGATCTTTGCCTGGAAACAGCTGGAAGATGGGCGCACCTTGTCTGACTACAAC 518928
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
|| || ||||| ||||||||||| | || || | || |||| ||||
Sbjct 518927 ATCCAGAAAGAGTCCACGCTACACCTGGTTCTCCGTCTCCGAGGTGGAA 518879
>seq1
Length=21314971
Score = 98.7 bits (108), Expect = 9e-16
Identities = 153/215 (71%), Gaps = 8/215 (4%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| |||||| | || || || ||||||| | || || ||| | |
Sbjct 18630932 ATGCAGATCTTTGTGAAGACTGTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 18630991
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| || || | || |||| |||| ||| | |||| ||||| || |||||||||
Sbjct 18630992 GACACCATTAAG--AATGTCAAAGCCAAAATTCAAT-ACAAGGAAGGTATCCCACCTGAC 18631048
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||||| | || ||||| || ||||| | || |||| |||||| | || |||
Sbjct 18631049 CAGCAGCGTCTGATATTTGCTGGTAAACAGCTGGAGGATGGCCGCACTCT--CAGACTAC 18631106
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || ||||| ||||| || || | |||||
Sbjct 18631107 AACATCCAGAAAGAGTCCACCCTGCACCTGGTGCT 18631141
>seq41
Length=9995516
Score = 95.1 bits (104), Expect = 1e-14
Identities = 143/201 (71%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
|||||||| || || || |||||| |||| || || ||||||| |||| || ||| |
Sbjct 7312092 ACAATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCC 7312151
Query 25056 TCTGACACTATCGAGTCACTG-AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|||||| || ||| || | ||| ||| ||| ||||||||||| || || |||||
Sbjct 7312152 GGTGACACCATTGAGA-ACGGCAAGGCAAAGATCCAGGACAAAGAAGGCATCCCTCCTGA 7312210
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||| ||| | || ||||| || ||||| | ||||||| |||| | || ||
Sbjct 7312211 CCAGCAGAGATCCATCTTTGCTGGGAAACAGCTGGAAGATGGATGCACCCTATCTGACTA 7312270
Query 25175 CAATATTCAAAAAGAATCCAC 25195
||| || || ||||| |||||
Sbjct 7312271 CAACATCCAGAAAGAGTCCAC 7312291
>seq407
Length=3256691
Score = 91.5 bits (100), Expect = 1e-13
Identities = 166/239 (69%), Gaps = 7/239 (3%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || ||||| ||||| | || || || ||||||| | || || ||| |
Sbjct 904446 AATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAA 904387
Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|||||| || ||| | || |||| |||| ||| ||||| || || || ||||||||
Sbjct 904386 TGACACCATTGAG--AATGTCAAAGCCAAAATTCAA-GACAAGGAGGGTATCCCACCTGA 904330
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||| ||||| | || |||||| || | || | || |||| ||||| | || ||
Sbjct 904329 CCAGCAGCGTCTGATATTTGCCAGCCAGCAGCTGGAGGATGGCCGCACGCTCTCAGACTA 904270
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTATT 25233
||| || || ||||| ||||| || || | ||||| | || |||| || ||||||
Sbjct 904269 CAACATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGAGGTGG-CATTATT 904212
>seq351
Length=2412480
Score = 89.7 bits (98), Expect = 4e-13
Identities = 165/238 (69%), Gaps = 7/238 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||| |||| ||||| |||| | | || || ||||||| | || || ||||| |
Sbjct 786113 ATGTAAATCTTTGTGAAGATACTCATGGGCAAGACCATCACCCTTGAGGTCGAGTCCAGT 786172
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| | ||| | || |||| |||| ||| |||||||| || || ||||||||
Sbjct 786173 GACACCACTGAG--AATGTCAAAGCCAAAATTCAA-GACAAAGAGGGTATCTCACCTGAC 786229
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||| | | || |||||||||||| | | || |||| |||||| | || |||
Sbjct 786230 CAGCAGTGTCTGATCTTTGCCGGCAAAGAGATGGAGGATGGCCGCACTCTCTCAGACTAC 786289
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTATT 25233
|| || || ||||| ||||| || || | ||||| | || |||| || ||||||
Sbjct 786290 AACATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGTGCCTGCGAGGTGG-CATTATT 786346
>seq38
Length=10264441
Score = 89.7 bits (98), Expect = 4e-13
Identities = 166/238 (70%), Gaps = 8/238 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| | | || || ||||||| | || || ||| | |
Sbjct 9540647 ATGCAGATCTTTGTGAAGACCCTCATGGGCAAGACCATCACCCTTGAGGTCGAGCCCG-T 9540705
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| || ||| | || |||| |||| ||| ||||| || || || |||||||||
Sbjct 9540706 GACACCATTGAG--AATGTCAAAGCCAAAATTCAA-GACAAGGAGGGTATCCCACCTGAC 9540762
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||||| | || |||||||||||||| | || |||| | ||| | || |||
Sbjct 9540763 CAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAGGATGGCCACACACTCTCAGACTAC 9540822
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTATT 25233
|| || || ||||| ||||| || || | ||||| | || |||| || ||||||
Sbjct 9540823 AACATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGAGGTGG-CATTATT 9540879
>seq487
Length=2137387
Score = 84.2 bits (92), Expect = 2e-11
Identities = 164/238 (69%), Gaps = 7/238 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || | ||| ||||| | || ||||| ||||||| | || || ||| | |
Sbjct 1405447 ATGCAGATCTCTGTGAAGACCCTCACGGGTAAGACCATCACCCTTGAGGTCGAGCCCAGT 1405388
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| || ||| | || || | |||| ||| ||||| | || || |||||||||
Sbjct 1405387 GACACCATTGAG--AATGTTAAATCCAAAATTCAA-GACAAGGTGGGTATCCCACCTGAC 1405331
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||| | | || ||||||||| |||| | || |||| ||||| | || |||
Sbjct 1405330 CAGCAGTGTCTGATATTTGCCGGCCAACAGCTGGAGGATGGCCGCACGCTCTCAGACTAC 1405271
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTATT 25233
|| || || ||||| ||||| || || | ||||| | || |||| || ||||||
Sbjct 1405270 AACATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGAGG-TGACATTATT 1405214
>seq112
Length=6082587
Score = 82.4 bits (90), Expect = 7e-11
Identities = 114/160 (71%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
|||||||| || || || ||| || |||| || || ||||||| | || | ||| |
Sbjct 2083892 ACAATGCAGATCTTCGTGAAGGCTCTGACTGGCAAGACCATCACCCTTGAGATTGAGCCA 2083833
Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|||||| || ||| | ||| ||| ||| ||||| ||||| || || ||||||
Sbjct 2083832 AGTGACACCATTGAGAATGTCAAGGCAAATATCCAGGACAAGGAAGGCATCCCTCCTGAC 2083773
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155
|||||| || | || ||||| || ||||| | |||||||
Sbjct 2083772 CAACAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATG 2083733
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433290207840140
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |