Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq526 269 3e-67 seq630 188 8e-43 seq2 96.9 4e-15 seq494 95.1 1e-14 seq248 84.2 2e-11 >seq526 Length=1402496 Score = 269 bits (298), Expect = 3e-67 Identities = 534/785 (68%), Gaps = 4/785 (1%) Strand=Plus/Plus Query 92923 TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACG 92982 ||| || || ||||| || ||||| || ||| | | |||||||| || | || Sbjct 113511 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTC 113570 Query 92983 TACAGGTAGAGCGTCGGTCAAGAAA-TCTTTCTCGATTACAACGGCTTCTTTCAAGATTT 93041 ||||| | || || || |||||| |||| || || ||| || | | |||| Sbjct 113571 CACAGGCAAGGCCTCAGT-AAGAAACTCTTGTTCTATCCGAACAGCATTGATAGTTATTT 113629 Query 93042 CTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGT 93101 || ||||||| | || |||||| ||||| | | ||| |||| | ||| ||||| | Sbjct 113630 CTCTTACTCTCTCCTCTGATGGTTTGTGTACTAGGTGTTTGAACATCAGGCAAGCAAAAT 113689 Query 93102 CGGTATGTAAACCTTCGTCTCGTGATATCAAC-TCATTGCTGAATGTTAAACCTGGTAAC 93160 | |||||||| || |||| || || || |||| ||||| | || || | | Sbjct 113690 GTGAGTGTAAACCCTCATCTC-TGCTAAAAAGGTCATGAGAAAATGTGAGGCCAGGCATC 113748 Query 93161 AGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCC 93220 ||||||| |||||||||||| ||||| || |||||| ||||||||| | || |||||| Sbjct 113749 AGTCCTCATTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGTAGATGCCTTCC 113808 Query 93221 ACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTT 93280 || || ||||| || |||| ||||| || | | || || | ||||| Sbjct 113809 ACTGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGC 113868 Query 93281 AAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAA 93340 || |||||||| || || || || | |||||| | ||||| || || || || || | Sbjct 113869 AAGGCCCAATCTGCCTTCTTGTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAAT 113928 Query 93341 TCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGG 93400 || | || | | |||| |||||| || ||||| | ||| ||||||||||||||| Sbjct 113929 TCCCTTTCATTGGGATCTTTTATGTAAGTGTCGATAAGGAGACCATACATTTCAGAATGT 113988 Query 93401 ACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCT 93460 | || ||||| ||||||||||| || |||||||| | |||| || ||||| | |||| Sbjct 113989 ATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGCCTTCTGTAATCTGAAGTTCT 114048 Query 93461 TGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCC 93520 || ||||| ||| || | |||||||| ||||| ||||| |||||||| |||||| Sbjct 114049 TGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAGGAAAGCC 114108 Query 93521 AATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCT 93580 | | || |||||| | | |||| ||| || || ||||| | || || Sbjct 114109 AGAACGTGAGATATAAAGTATCTCTCCTCAGGCTTCAGGGATTCCCAGTGCCGTATGTCC 114168 Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCC 93640 || || || || || || || | |||| || || || || || || || | ||| | | Sbjct 114169 TTGGACAGGTCTACCTCCTCAGCGCTCCAGAAGGAGGCGTCCGCCTTCTTATGCATCTGC 114228 Query 93641 CATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAAC 93700 || |||| || || | || || || |||||||| || |||||| ||| |||| | | Sbjct 114229 CAGATGTTGTGGTACTCGATGGGGAAAATGACAAAGCGGCGAGGGTTTTCTCTTAGCAGC 114288 Query 93701 GGCTC 93705 ||||| Sbjct 114289 GGCTC 114293 >seq630 Length=879232 Score = 188 bits (208), Expect = 8e-43 Identities = 391/576 (68%), Gaps = 12/576 (2%) Strand=Plus/Plus Query 93058 TGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTC 93117 || |||||| ||||| | | | | |||| | ||| ||||| || |||||||| || Sbjct 417794 TGATGGTTTGTGTACTAGGTGTTGGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTC 417853 Query 93118 GTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGA 93176 |||| || || || | |||| ||||| | || || | ||||||||||||||| | Sbjct 417854 ATCTC-TGCTAAAAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTAA 417912 Query 93177 GCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCA 93236 |||| ||||| ||||| ||| ||||||||| || | |||||||| || ||||| || Sbjct 417913 GCCAGAATATGGAAGCTAAAGAACCAGAAAAGAAGACGCCTTCCACTGCAGCAAAGGCA- 417971 Query 93237 CAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTT 93296 |||| || | | || || | ||||| || |||| || || | Sbjct 417972 ------GTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCGGTCTGCCT 418025 Query 93297 TTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAAT 93356 | ||||| | |||||| | ||||| || || || || || | || | ||| | || Sbjct 418026 TCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTCCCTTTCGCTGGGAT 418085 Query 93357 CTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAA 93416 || ||| || || || | | ||| ||||||||||||||| | || ||||| ||| Sbjct 418086 CTTTTATATACGTGTCAGTAAGGAGACTATACATTTCAGAATGTATGTTGTCCATGCCAA 418145 Query 93417 TTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTA 93476 |||||||||| |||||||| | || || || ||||| |||||||| ||||| ||| | Sbjct 418146 TTTGGAATCCATAGAAACAGCGGGCCTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCA 418205 Query 93477 CGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAA 93536 | | |||||||| ||||| || || ||||||||| ||| || | || ||||| Sbjct 418206 CCAAGTTTTCATTTACTATGCCGTCACTTGCTGCAAAGAAACTCAGAACGTGGGATATAA 418265 Query 93537 AATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATAGATCTTTTGAAAGATCGACT 93595 | ||| |||| || || || ||||| | | || | || || || | || || Sbjct 418266 AGTGTCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCGA-ATGTCCTTGGACGGGTCCACC 418324 Query 93596 TCTTCGACAGTCCAAAACGATGCTTCTG-CTTTTTT 93630 |||||| | |||||||| || || || | ||| ||| Sbjct 418325 TCTTCGGCGGTCCAAAAGGAGGCCTCCGTCTTGTTT 418360 >seq2 Length=18007423 Score = 96.9 bits (106), Expect = 4e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 93347 TCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTC 93406 |||| | |||| |||||| || || || | ||| ||||||||||||||| | || Sbjct 1939029 TCGTTGGGATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTT 1938970 Query 93407 TCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAA 93466 ||||| ||||||||||| || |||||||| | ||||| || ||||| |||||||| | Sbjct 1938969 TCCATGGCAATTTGGAAACCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTA 1938910 Query 93467 AATCTCTCTAC 93477 |||| ||| || Sbjct 1938909 AATCGCTCCAC 1938899 Score = 93.3 bits (102), Expect = 5e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202 ||||| | || || | ||||||||||||||||||||| ||||| || |||||| |||| Sbjct 1941460 AATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCA 1941401 Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||||| || || ||||| || || ||||| || || | |||||| Sbjct 1941400 GAAAAGAAGATGCCTTCTACTGCAGCAAAGGCTACGACACGTTC 1941357 >seq494 Length=1524325 Score = 95.1 bits (104), Expect = 1e-14 Identities = 332/505 (66%), Gaps = 30/505 (6%) Strand=Plus/Minus Query 93160 CAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTC 93219 ||||| | ||||||||| ||| ||||| || |||||| ||| ||| | || | ||||| Sbjct 780018 CAGTCATGGTTTCTTGAACCAGAATATCGATGCAAAAGAACCGGAAGAGAAGGTGCCTTC 779959 Query 93220 CACGGCTGCAAATGCCACAATACGTTC------GGCAAAATTTGCGGAATTACTGCTGAT 93273 || | ||||| || ||| |||||| || || || | | | || || Sbjct 779958 TACTGTGGCAAAGGCTGCAACACGTTCTCCGTGGGTAACATCTTTGT--TCACA----AT 779905 Query 93274 CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAA 93333 ||| || ||||||| || | ||||| | || ||| | |||| || || || || Sbjct 779904 CCAACACAAGGCCCAATTTGCCTGCTTCTTGACACTAGGCATCCTTTCAATGGCATTGAA 779845 Query 93334 TAGGTAATCTCGCTCGTCCGAATCTCGTATGTA---TGTATCGATTAACAGAGAATACAT 93390 || || ||| || ||| | | || | || ||| || | || | | || ||| Sbjct 779844 GAG--AAACTCTCT--TCCTT-TGTTGTCTTTAACATGTGTCAGTAAAGATATTATCCAT 779790 Query 93391 TTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGAT 93450 ||||||| || || ||||| ||||||||||| || | ||| || | ||| || Sbjct 779789 GTCAGAATAGATGTTTTCCATAGCAATTTGGAAGCCATTGAAGCA---GGTTTCTGTAGC 779733 Query 93451 CTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGC 93510 || |||||||| || ||| || | |||| || ||||| |||||| ||||||| Sbjct 779732 CTCAACTTCTTGGACGCATTGCTCCACCAAGTTTTTATCAACTATGCCATCGCATGCTGC 779673 Query 93511 aaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCA-TCTTTA-AGCTTATCCCAA 93568 ||| |||| || ||||| |||||||| | | || ||| |||| | |||| |||||| Sbjct 779672 AAAGAAAGTCAGAATATGGGATATAAAATATCTTTCCTCAGTCTTCAGAGCT--TCCCAA 779615 Query 93569 T-CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTT 93627 | | || | ||||| || || | || || | | | |||| || || ||| |||| Sbjct 779614 TGCTGA-ATGTCTTTGGACAGGCCCACCTCCTGGGCCATCCAGAAGGAAATCTCTACTTT 779556 Query 93628 TTTGTACATATCCCATATGTCTTGA 93652 || || || | ||| || || ||| Sbjct 779555 CTTATA-ATTTTCCAAATATCATGA 779532 >seq248 Length=3346475 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/138 (74%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 93385 ATACATTTCAGAATGGACATTCTCC-ATTGCAATTTGGAATCCGTAGAAACATCTAGCTT 93443 ||| | ||||||||| | || ||| || ||||||||||| || |||||||| |||| Sbjct 2858465 ATATACTTCAGAATGTAGCTTTTCCCATAGCAATTTGGAAGCCATAGAAACAGTGGGCTT 2858406 Query 93444 CCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGG 93503 | || | ||| |||| || |||| |||||| ||||||| ||||| ||||| | Sbjct 2858405 CTGTAAGCTGAGCTTCCTGGCTAAATTGCTCTACCTAGCTTTCATTTACTATGCCATCAG 2858346 Query 93504 ATGCTGCaaaaaaaGCCA 93521 |||| ||| |||||||| Sbjct 2858345 TTGCTTCAACAAAAGCCA 2858328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556810988801440