Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq526 269 3e-67
seq630 188 8e-43
seq2 96.9 4e-15
seq494 95.1 1e-14
seq248 84.2 2e-11
>seq526
Length=1402496
Score = 269 bits (298), Expect = 3e-67
Identities = 534/785 (68%), Gaps = 4/785 (1%)
Strand=Plus/Plus
Query 92923 TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACG 92982
||| || || ||||| || ||||| || ||| | | |||||||| || | ||
Sbjct 113511 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTC 113570
Query 92983 TACAGGTAGAGCGTCGGTCAAGAAA-TCTTTCTCGATTACAACGGCTTCTTTCAAGATTT 93041
||||| | || || || |||||| |||| || || ||| || | | ||||
Sbjct 113571 CACAGGCAAGGCCTCAGT-AAGAAACTCTTGTTCTATCCGAACAGCATTGATAGTTATTT 113629
Query 93042 CTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGT 93101
|| ||||||| | || |||||| ||||| | | ||| |||| | ||| ||||| |
Sbjct 113630 CTCTTACTCTCTCCTCTGATGGTTTGTGTACTAGGTGTTTGAACATCAGGCAAGCAAAAT 113689
Query 93102 CGGTATGTAAACCTTCGTCTCGTGATATCAAC-TCATTGCTGAATGTTAAACCTGGTAAC 93160
| |||||||| || |||| || || || |||| ||||| | || || | |
Sbjct 113690 GTGAGTGTAAACCCTCATCTC-TGCTAAAAAGGTCATGAGAAAATGTGAGGCCAGGCATC 113748
Query 93161 AGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCC 93220
||||||| |||||||||||| ||||| || |||||| ||||||||| | || ||||||
Sbjct 113749 AGTCCTCATTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGTAGATGCCTTCC 113808
Query 93221 ACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTT 93280
|| || ||||| || |||| ||||| || | | || || | |||||
Sbjct 113809 ACTGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGC 113868
Query 93281 AAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAA 93340
|| |||||||| || || || || | |||||| | ||||| || || || || || |
Sbjct 113869 AAGGCCCAATCTGCCTTCTTGTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAAT 113928
Query 93341 TCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGG 93400
|| | || | | |||| |||||| || ||||| | ||| |||||||||||||||
Sbjct 113929 TCCCTTTCATTGGGATCTTTTATGTAAGTGTCGATAAGGAGACCATACATTTCAGAATGT 113988
Query 93401 ACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCT 93460
| || ||||| ||||||||||| || |||||||| | |||| || ||||| | ||||
Sbjct 113989 ATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGCCTTCTGTAATCTGAAGTTCT 114048
Query 93461 TGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCC 93520
|| ||||| ||| || | |||||||| ||||| ||||| |||||||| ||||||
Sbjct 114049 TGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAGGAAAGCC 114108
Query 93521 AATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCT 93580
| | || |||||| | | |||| ||| || || ||||| | || ||
Sbjct 114109 AGAACGTGAGATATAAAGTATCTCTCCTCAGGCTTCAGGGATTCCCAGTGCCGTATGTCC 114168
Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCC 93640
|| || || || || || || | |||| || || || || || || || | ||| | |
Sbjct 114169 TTGGACAGGTCTACCTCCTCAGCGCTCCAGAAGGAGGCGTCCGCCTTCTTATGCATCTGC 114228
Query 93641 CATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAAC 93700
|| |||| || || | || || || |||||||| || |||||| ||| |||| | |
Sbjct 114229 CAGATGTTGTGGTACTCGATGGGGAAAATGACAAAGCGGCGAGGGTTTTCTCTTAGCAGC 114288
Query 93701 GGCTC 93705
|||||
Sbjct 114289 GGCTC 114293
>seq630
Length=879232
Score = 188 bits (208), Expect = 8e-43
Identities = 391/576 (68%), Gaps = 12/576 (2%)
Strand=Plus/Plus
Query 93058 TGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTC 93117
|| |||||| ||||| | | | | |||| | ||| ||||| || |||||||| ||
Sbjct 417794 TGATGGTTTGTGTACTAGGTGTTGGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTC 417853
Query 93118 GTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGA 93176
|||| || || || | |||| ||||| | || || | ||||||||||||||| |
Sbjct 417854 ATCTC-TGCTAAAAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTAA 417912
Query 93177 GCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCA 93236
|||| ||||| ||||| ||| ||||||||| || | |||||||| || ||||| ||
Sbjct 417913 GCCAGAATATGGAAGCTAAAGAACCAGAAAAGAAGACGCCTTCCACTGCAGCAAAGGCA- 417971
Query 93237 CAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTT 93296
|||| || | | || || | ||||| || |||| || || |
Sbjct 417972 ------GTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCGGTCTGCCT 418025
Query 93297 TTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAAT 93356
| ||||| | |||||| | ||||| || || || || || | || | ||| | ||
Sbjct 418026 TCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTCCCTTTCGCTGGGAT 418085
Query 93357 CTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAA 93416
|| ||| || || || | | ||| ||||||||||||||| | || ||||| |||
Sbjct 418086 CTTTTATATACGTGTCAGTAAGGAGACTATACATTTCAGAATGTATGTTGTCCATGCCAA 418145
Query 93417 TTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTA 93476
|||||||||| |||||||| | || || || ||||| |||||||| ||||| ||| |
Sbjct 418146 TTTGGAATCCATAGAAACAGCGGGCCTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCA 418205
Query 93477 CGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAA 93536
| | |||||||| ||||| || || ||||||||| ||| || | || |||||
Sbjct 418206 CCAAGTTTTCATTTACTATGCCGTCACTTGCTGCAAAGAAACTCAGAACGTGGGATATAA 418265
Query 93537 AATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATAGATCTTTTGAAAGATCGACT 93595
| ||| |||| || || || ||||| | | || | || || || | || ||
Sbjct 418266 AGTGTCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCGA-ATGTCCTTGGACGGGTCCACC 418324
Query 93596 TCTTCGACAGTCCAAAACGATGCTTCTG-CTTTTTT 93630
|||||| | |||||||| || || || | ||| |||
Sbjct 418325 TCTTCGGCGGTCCAAAAGGAGGCCTCCGTCTTGTTT 418360
>seq2
Length=18007423
Score = 96.9 bits (106), Expect = 4e-15
Identities = 100/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 93347 TCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTC 93406
|||| | |||| |||||| || || || | ||| ||||||||||||||| | ||
Sbjct 1939029 TCGTTGGGATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTT 1938970
Query 93407 TCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAA 93466
||||| ||||||||||| || |||||||| | ||||| || ||||| |||||||| |
Sbjct 1938969 TCCATGGCAATTTGGAAACCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTA 1938910
Query 93467 AATCTCTCTAC 93477
|||| ||| ||
Sbjct 1938909 AATCGCTCCAC 1938899
Score = 93.3 bits (102), Expect = 5e-14
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202
||||| | || || | ||||||||||||||||||||| ||||| || |||||| ||||
Sbjct 1941460 AATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCA 1941401
Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246
||||| || || ||||| || || ||||| || || | ||||||
Sbjct 1941400 GAAAAGAAGATGCCTTCTACTGCAGCAAAGGCTACGACACGTTC 1941357
>seq494
Length=1524325
Score = 95.1 bits (104), Expect = 1e-14
Identities = 332/505 (66%), Gaps = 30/505 (6%)
Strand=Plus/Minus
Query 93160 CAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTC 93219
||||| | ||||||||| ||| ||||| || |||||| ||| ||| | || | |||||
Sbjct 780018 CAGTCATGGTTTCTTGAACCAGAATATCGATGCAAAAGAACCGGAAGAGAAGGTGCCTTC 779959
Query 93220 CACGGCTGCAAATGCCACAATACGTTC------GGCAAAATTTGCGGAATTACTGCTGAT 93273
|| | ||||| || ||| |||||| || || || | | | || ||
Sbjct 779958 TACTGTGGCAAAGGCTGCAACACGTTCTCCGTGGGTAACATCTTTGT--TCACA----AT 779905
Query 93274 CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAA 93333
||| || ||||||| || | ||||| | || ||| | |||| || || || ||
Sbjct 779904 CCAACACAAGGCCCAATTTGCCTGCTTCTTGACACTAGGCATCCTTTCAATGGCATTGAA 779845
Query 93334 TAGGTAATCTCGCTCGTCCGAATCTCGTATGTA---TGTATCGATTAACAGAGAATACAT 93390
|| || ||| || ||| | | || | || ||| || | || | | || |||
Sbjct 779844 GAG--AAACTCTCT--TCCTT-TGTTGTCTTTAACATGTGTCAGTAAAGATATTATCCAT 779790
Query 93391 TTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGAT 93450
||||||| || || ||||| ||||||||||| || | ||| || | ||| ||
Sbjct 779789 GTCAGAATAGATGTTTTCCATAGCAATTTGGAAGCCATTGAAGCA---GGTTTCTGTAGC 779733
Query 93451 CTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGC 93510
|| |||||||| || ||| || | |||| || ||||| |||||| |||||||
Sbjct 779732 CTCAACTTCTTGGACGCATTGCTCCACCAAGTTTTTATCAACTATGCCATCGCATGCTGC 779673
Query 93511 aaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCA-TCTTTA-AGCTTATCCCAA 93568
||| |||| || ||||| |||||||| | | || ||| |||| | |||| ||||||
Sbjct 779672 AAAGAAAGTCAGAATATGGGATATAAAATATCTTTCCTCAGTCTTCAGAGCT--TCCCAA 779615
Query 93569 T-CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTT 93627
| | || | ||||| || || | || || | | | |||| || || ||| ||||
Sbjct 779614 TGCTGA-ATGTCTTTGGACAGGCCCACCTCCTGGGCCATCCAGAAGGAAATCTCTACTTT 779556
Query 93628 TTTGTACATATCCCATATGTCTTGA 93652
|| || || | ||| || || |||
Sbjct 779555 CTTATA-ATTTTCCAAATATCATGA 779532
>seq248
Length=3346475
Score = 84.2 bits (92), Expect = 2e-11
Identities = 102/138 (74%), Gaps = 1/138 (1%)
Strand=Plus/Minus
Query 93385 ATACATTTCAGAATGGACATTCTCC-ATTGCAATTTGGAATCCGTAGAAACATCTAGCTT 93443
||| | ||||||||| | || ||| || ||||||||||| || |||||||| ||||
Sbjct 2858465 ATATACTTCAGAATGTAGCTTTTCCCATAGCAATTTGGAAGCCATAGAAACAGTGGGCTT 2858406
Query 93444 CCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGG 93503
| || | ||| |||| || |||| |||||| ||||||| ||||| ||||| |
Sbjct 2858405 CTGTAAGCTGAGCTTCCTGGCTAAATTGCTCTACCTAGCTTTCATTTACTATGCCATCAG 2858346
Query 93504 ATGCTGCaaaaaaaGCCA 93521
|||| ||| ||||||||
Sbjct 2858345 TTGCTTCAACAAAAGCCA 2858328
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556810988801440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |