Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq4 105 5e-18 seq573 96.9 2e-15 seq3 96.9 2e-15 seq72 95.1 9e-15 seq292 93.3 3e-14 seq181 93.3 3e-14 seq53 89.7 4e-13 seq434 87.8 1e-12 seq83 86.0 4e-12 seq69 86.0 4e-12 seq25 86.0 4e-12 seq290 84.2 2e-11 seq118 84.2 2e-11 seq63 84.2 2e-11 seq64 82.4 5e-11 >seq4 Length=15321207 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || || | ||||| | ||||| || ||||| ||| | || ||| | Sbjct 5242992 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATAACCCTCGAGGTTGAACC 5243051 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | | |||||| | | || | ||| ||||| ||||| || || | ||| | Sbjct 5243052 CTCGGAAACGATAGAAAATGTAAAGGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGA 5243111 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || || ||||| |||||||||||||| ||||| |||||| | ||| || | || || Sbjct 5243112 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 5243171 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||| ||||||||||| |||||||||||| | || || Sbjct 5243172 CAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 5243207 >seq573 Length=1150292 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || || | ||||| | ||||| || ||||| ||| | || ||| | Sbjct 200700 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACC 200641 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | | || ||| | | || | ||| || || ||||| || || | ||| | Sbjct 200640 CTCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 200581 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || || ||||| |||||||||||||| ||||| |||||| | ||| || | || || Sbjct 200580 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 200521 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||| ||||||||||| |||||||||||| | || || Sbjct 200520 CAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 200485 >seq3 Length=16812482 Score = 96.9 bits (106), Expect = 2e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || || | ||||| | ||||| || ||||| ||| | || ||| | Sbjct 14707074 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACC 14707015 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | |||| | | | | || | ||| || || ||||| || || | ||| | Sbjct 14707014 CTCAGATATGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 14706955 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || || ||||| |||||||||||||| ||||| |||||| | ||| || | || || Sbjct 14706954 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 14706895 Query 22010 CAATATTCAGAAGGAATCTACTCTTCAT 22037 ||| ||||||||||| |||||||||||| Sbjct 14706894 CAACATTCAGAAGGAGTCTACTCTTCAT 14706867 >seq72 Length=7750101 Score = 95.1 bits (104), Expect = 9e-15 Identities = 152/217 (70%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAA-ACCATTACCGTGGAAACGGAAG 21888 ||||||||| || ||| | ||||| | ||||| ||| ||||||||| | || ||| Sbjct 2356207 CAAAATGCAGATTTTTGTGAAAACTCTTACGGGGAAAGACCATTACCCTCGAGGTTGAAC 2356148 Query 21889 CCGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAA 21948 || | || ||| | | || | ||| ||||| ||||| || || | ||| Sbjct 2356147 CCTCGGATACGATAGAAAATGTAAAGGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTG 2356088 Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 | || || ||||| |||||||||||||| ||| |||||| | ||| | | || | Sbjct 2356087 ATCAGCAAAGACTGATCTTTGCTGGCAAGACACTGGAAGATGGACGCACTTTATCTGACT 2356028 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 |||| ||||||||||| |||||||||||| | || || Sbjct 2356027 ACAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 2355991 >seq292 Length=4239571 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || || | ||||| | ||||| || ||||| ||| | || ||| | Sbjct 2944191 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACC 2944132 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | | || ||| | | || | ||| || || ||||| || || | ||| | Sbjct 2944131 CTCGGATACGATAGAAAATGTAAAGGTCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 2944072 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || || ||||| |||||||||||||| |||| ||| || | ||| || | || || Sbjct 2944071 TCAGCAAAGACTGATCTTTGCTGGCAAGGAACTGGAATATGGACGCACTTTGTCTGACTA 2944012 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||||||||||||||| |||||||||||| | || || Sbjct 2944011 CAATATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 2943976 >seq181 Length=4179193 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || || | ||||| | ||||| || ||||| ||| | || ||| | Sbjct 2580697 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACC 2580638 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | | || ||| | | || | ||| || || ||||| || || | | | | Sbjct 2580637 CTCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCGTCCTGA 2580578 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || || ||||| |||||||||||||| ||||| |||||| | ||| || | || || Sbjct 2580577 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 2580518 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||| ||||||||||| |||||||||||| | || || Sbjct 2580517 CAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 2580482 >seq53 Length=8749341 Score = 89.7 bits (98), Expect = 4e-13 Identities = 152/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || ||| | ||||| | || || || ||||| ||| | || ||| | Sbjct 1284994 CAAAATGCAGATTTTTGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAAAC 1284935 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGG---TGTACCTGT 21946 | |||||| | | ||| | ||| || || ||||| || || | | |||| Sbjct 1284934 CTTGGAAACGATAGAAGATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCTTCCTG- 1284876 Query 21947 AAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGA 22006 | || || ||||| ||||||||||||| ||||| |||||| | ||| || | || Sbjct 1284875 --ATCAGCAAAGACTGATCTTTGCTGGCAGGCAACTGGAAGATGGACGTACTTTGTCTGA 1284818 Query 22007 TTACAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 |||| ||||||||||| |||||||||||| | || || Sbjct 1284817 CTACAGCATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 1284779 >seq434 Length=1819716 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || || | ||||| | || || || ||||| ||| | || ||| | Sbjct 1331512 CAAAATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACC 1331453 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | | || ||| | | || | ||| || || ||||| || || | ||| | Sbjct 1331452 CTCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 1331393 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || || ||||| |||||||||||||| ||||| |||||| | ||| || | || || Sbjct 1331392 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 1331333 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 || ||||||||||| |||||||||||| | || || Sbjct 1331332 TAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 1331297 >seq83 Length=10167762 Score = 86.0 bits (94), Expect = 4e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || || ||||| |||||||||||||| ||||| |||||| | | | | || | || ||| Sbjct 3734406 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACATATTTTGTCTGACTAC 3734347 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 |||||||| ||||| |||||||||||| | || || Sbjct 3734346 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 3734312 >seq69 Length=11786368 Score = 86.0 bits (94), Expect = 4e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || || ||||| |||||||||||||| ||||| |||||| | ||| || | || ||| Sbjct 9297128 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGAGGTACTTTGTCTGACTAC 9297187 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 || ||||||||||| |||||||||||| | || || Sbjct 9297188 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 9297222 >seq25 Length=15232693 Score = 86.0 bits (94), Expect = 4e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || || ||||| |||| ||||||||| |||||||||||| | ||| || | || ||| Sbjct 12145350 CAGCAAAGACTGATCTATGCTGGCAAGCAACTAGAAGATGGATGTACTCTGTCTGACTAC 12145291 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGT 22042 || ||||| ||||| |||||||||||| |||| Sbjct 12145290 AACATTCAAAAGGAGTCTACTCTTCATCTGGT 12145259 >seq290 Length=2922102 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 21832 AAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCG 21891 ||||||| || ||| | ||||| | | ||| || ||||| ||| | || | ||| | Sbjct 1757769 AAATGCAGATTTTTGTGAAAACCCTTATGGGGAAGACCATCACCCTCGAGGCTGAACCTT 1757710 Query 21892 CAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACC 21951 | || ||| | | || | ||| || || |||||||| || | ||| | | Sbjct 1757709 CGGATACGATAGAAAATGTAAAGTCCAAGATCCAGGATAAAGAAGGAATTCCTTGTGATC 1757650 Query 21952 AACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACA 22011 | || || || |||||||||||||| ||||| |||||| | ||| || | || |||| Sbjct 1757649 AGCAAAGGCTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACA 1757590 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 | ||||| ||||| |||| ||||||| | || || Sbjct 1757589 ACATTCAAAAGGAGTCTATTCTTCATCTTGTGTT 1757556 >seq118 Length=10303814 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 |||||||| || || ||| | || | ||||| || ||||||||||| ||||| ||| Sbjct 8799420 GATAAAGAAGGAGTTCCTCCTGATCAGTAAAGACTGATTTTTGCTGGCAAGCAACTGGAA 8799361 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||| | | ||| || | || | ||| ||||||||||| |||||||||||| | || || Sbjct 8799360 GATATGCATACTCTGCCTGACTGCAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 8799302 >seq63 Length=8132274 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || || | ||||| | | ||| || ||||| ||| | || ||| | Sbjct 6710564 CAAAATGCAGATTTTCGTGAAAACCCTTATGGGGAAGACCATCACCCTCGAGGTTGAACC 6710505 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | | || ||| | | || | ||| || | ||||| || || | ||| | Sbjct 6710504 CTCGGATACGATAGAAAATGTAAAGACCAAGGTCCAGGATAAGGAAGGAATTCCTCCTGA 6710445 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || || ||||| |||||||||||||| ||||| |||| | | ||| || | || || Sbjct 6710444 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGGTGGACGTACTTTGTCTGACTA 6710385 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||| ||||||||||| |||||||||||| | || || Sbjct 6710384 CAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 6710349 >seq64 Length=8039362 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || || ||||| |||| ||||||||| ||||| |||||| | ||| || | || ||| Sbjct 5682408 CAGCAAAGACTGATCTCTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 5682467 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 || ||||||||||| |||||||||||| | || || Sbjct 5682468 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 5682502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358093566593224