Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq526 158 2e-33 seq630 134 3e-26 seq2 84.2 4e-11 >seq526 Length=1402496 Score = 158 bits (174), Expect = 2e-33 Identities = 394/588 (67%), Gaps = 18/588 (3%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 |||||| |||| |||||||| ||| | ||||||||| | |||| ||||| ||| Sbjct 114248 ATCGAGTACCACAACATCTGGCAGATGCATAAGAAGGCGGACGCCTCCTTCTGGAGCGCT 114189 Query 42345 GAGGAGATTGACCTGGCCAAGGACA--CGGCCGGCTGGGAGTCACTGT---CTGAGAACG 42399 |||||| | |||||| ||||||||| |||| |||||| || ||| ||||| | Sbjct 114188 GAGGAGGTAGACCTGTCCAAGGACATACGGCA--CTGGGAATCCCTGAAGCCTGAGGAGA 114131 Query 42400 AAAAGTTTTTC-CTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAAT 42458 | | ||| | |||| | | ||||| ||| | || || ||| |||||||| ||| Sbjct 114130 GATACTTTATATCTCA----CGTTCTGGCTTTCCTTGCAGCAAGTGATGGCATAGTAAAT 114075 Query 42459 GAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCT 42516 || ||| ||| | || | |||| | ||| ||| |||| |||| |||| Sbjct 114074 GAAAACTTGGTGGAGCGATTTAGCCAAGAACTTCAGATTACAGA-AGGCT-GCTGTTTCT 114017 Query 42517 ACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACA 42576 | |||||||| || ||||| || ||| | || ||||| |||| | || || ||| Sbjct 114016 ATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATGGTCTCCTTATCGACA 113957 Query 42577 CGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCT 42636 | ||||| |||||| || | | || ||||| ||||| || |||||||| | Sbjct 113956 CTTACATAAAAGATCCCAATGAAAGGGAATTTCTCTTCAATGCCATTGAAACGATGCCTT 113897 Query 42637 GCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCG 42696 | |||| |||||||| || ||||| | |||||| | | || || || | | Sbjct 113896 GTGTCAACAAGAAGGCAGATTGGGCCTTGCGCTGGATTGGGGACAAAGAGGCTACCTATG 113837 Query 42697 GCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCT 42756 | || | | ||||||||| | || || || ||||||| ||| || || | || || | Sbjct 113836 GTGAACGCGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTACTTTTCTGGTTCTTTTGCAT 113777 Query 42757 CCATCTTCTGGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 |||| |||||||||||| | ||| | |||||| || ||||| || || | || || Sbjct 113776 CCATATTCTGGCTCAAGAAATGAGGACT-GATGCCTGGCCTCACATTTTCTCATGACCTT 113718 Query 42816 ATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 | ||||| || ||||| | || | ||||| ||||| ||||| Sbjct 113717 TTTAGCAGAGATGAGGGTTTACACTCACATTTTGCTTGCCTGATGTTC 113670 >seq630 Length=879232 Score = 134 bits (148), Expect = 3e-26 Identities = 375/565 (66%), Gaps = 39/565 (7%) Strand=Plus/Minus Query 42315 AAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGACA--CGG 42372 || ||| || || |||| ||||||||||| ||| | |||| | ||||||||| ||| Sbjct 418359 AACAAGACGGAGGCCTCCTTTTGGACCGCCGAAGAGGTGGACCCGTCCAAGGACATTCGG 418300 Query 42373 CCGGCTGGGAGTCACTGT---CTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGCCT 42429 | |||||| || ||| | ||| | | | ||| | | | | | ||| | Sbjct 418299 CA--CTGGGAATCCCTGAAGCCCGAGGAGAGACACTTTATATCCCA---CGTTCTGAGTT 418245 Query 42430 TCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGG 42489 |||| || || |||||||||||| ||||| ||| ||| | || | |||| | Sbjct 418244 TCTTTGCAGCAAGTGACGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGCCAAGAAG 418185 Query 42490 TGCAG--TACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCA 42547 | ||| ||| ||||| ||||| ||||| || ||||| || | ||| || ||| | || Sbjct 418184 TTCAGATTACA--GAGGCCCGCTGTTTCTATGGATTCCAAATTGGCATGGACAACATACA 418127 Query 42548 CTCTGAGGTGTA----CGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTA 42603 ||||| |||| | || |||| ||||||| || |||||| |||| | Sbjct 418126 TTCTGAAATGTATAGTCTCCTTACTG----ACACGTATATAAAAGATCCC----AGCGAA 418075 Query 42604 ACGGG----CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGG 42659 | || || ||||| ||||| || |||||||| || ||||||||||||| ||| || Sbjct 418074 AGGGAATTTCTCTTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGACCGG 418015 Query 42660 GCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACC 42719 || | |||||| | | || || || | || || || |||||| | Sbjct 418014 GCCTTGCGCTGGATTGGGGACAAAGAGGCTACCTATGGTGA---ACT----GCCTTTGCT 417962 Query 42720 GCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG-CAGAA 42778 || || || ||| ||||||| || || | || || ||||| |||||||| ||| | | Sbjct 417961 GCAGTGGAAGGCGTCTTCTTTTCTGGTTCTTTAGCTTCCATATTCTGGCTTAAGAAACGA 417902 Query 42779 GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCA 42838 || | |||||| || ||||| || || || ||||| | ||||| || ||||| | || Sbjct 417901 GGACT-GATGCCTGGCCTCACATTTTCTAATGAACTTTTTAGCAGAGATGAGGGTTTACA 417843 Query 42839 TAGGGACTTTGCCTGCCTCCTGTTC 42863 | || ||||| ||||| ||||| Sbjct 417842 CTGTGATTTTGCTTGCCTGATGTTC 417818 >seq2 Length=18007423 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| | || || || ||||||||||| || || | || || ||||| |||||| Sbjct 1941366 GTAGCCTTTGCTGCAGTAGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGG 1941425 Query 42768 CTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| | ||| | |||||| || ||||| || || || ||||| || ||||| || Sbjct 1941426 CTCAAGAAACGAGGACT-GATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCAGAGA 1941484 Query 42827 CGAGG 42831 |||| Sbjct 1941485 TGAGG 1941489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944254728858560