Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq526 158 2e-33
seq630 134 3e-26
seq2 84.2 4e-11
>seq526
Length=1402496
Score = 158 bits (174), Expect = 2e-33
Identities = 394/588 (67%), Gaps = 18/588 (3%)
Strand=Plus/Minus
Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344
|||||| |||| |||||||| ||| | ||||||||| | |||| ||||| |||
Sbjct 114248 ATCGAGTACCACAACATCTGGCAGATGCATAAGAAGGCGGACGCCTCCTTCTGGAGCGCT 114189
Query 42345 GAGGAGATTGACCTGGCCAAGGACA--CGGCCGGCTGGGAGTCACTGT---CTGAGAACG 42399
|||||| | |||||| ||||||||| |||| |||||| || ||| ||||| |
Sbjct 114188 GAGGAGGTAGACCTGTCCAAGGACATACGGCA--CTGGGAATCCCTGAAGCCTGAGGAGA 114131
Query 42400 AAAAGTTTTTC-CTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAAT 42458
| | ||| | |||| | | ||||| ||| | || || ||| |||||||| |||
Sbjct 114130 GATACTTTATATCTCA----CGTTCTGGCTTTCCTTGCAGCAAGTGATGGCATAGTAAAT 114075
Query 42459 GAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCT 42516
|| ||| ||| | || | |||| | ||| ||| |||| |||| ||||
Sbjct 114074 GAAAACTTGGTGGAGCGATTTAGCCAAGAACTTCAGATTACAGA-AGGCT-GCTGTTTCT 114017
Query 42517 ACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACA 42576
| |||||||| || ||||| || ||| | || ||||| |||| | || || |||
Sbjct 114016 ATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATGGTCTCCTTATCGACA 113957
Query 42577 CGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCT 42636
| ||||| |||||| || | | || ||||| ||||| || |||||||| |
Sbjct 113956 CTTACATAAAAGATCCCAATGAAAGGGAATTTCTCTTCAATGCCATTGAAACGATGCCTT 113897
Query 42637 GCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCG 42696
| |||| |||||||| || ||||| | |||||| | | || || || | |
Sbjct 113896 GTGTCAACAAGAAGGCAGATTGGGCCTTGCGCTGGATTGGGGACAAAGAGGCTACCTATG 113837
Query 42697 GCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCT 42756
| || | | ||||||||| | || || || ||||||| ||| || || | || || |
Sbjct 113836 GTGAACGCGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTACTTTTCTGGTTCTTTTGCAT 113777
Query 42757 CCATCTTCTGGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815
|||| |||||||||||| | ||| | |||||| || ||||| || || | || ||
Sbjct 113776 CCATATTCTGGCTCAAGAAATGAGGACT-GATGCCTGGCCTCACATTTTCTCATGACCTT 113718
Query 42816 ATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863
| ||||| || ||||| | || | ||||| ||||| |||||
Sbjct 113717 TTTAGCAGAGATGAGGGTTTACACTCACATTTTGCTTGCCTGATGTTC 113670
>seq630
Length=879232
Score = 134 bits (148), Expect = 3e-26
Identities = 375/565 (66%), Gaps = 39/565 (7%)
Strand=Plus/Minus
Query 42315 AAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGACA--CGG 42372
|| ||| || || |||| ||||||||||| ||| | |||| | ||||||||| |||
Sbjct 418359 AACAAGACGGAGGCCTCCTTTTGGACCGCCGAAGAGGTGGACCCGTCCAAGGACATTCGG 418300
Query 42373 CCGGCTGGGAGTCACTGT---CTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGCCT 42429
| |||||| || ||| | ||| | | | ||| | | | | | ||| |
Sbjct 418299 CA--CTGGGAATCCCTGAAGCCCGAGGAGAGACACTTTATATCCCA---CGTTCTGAGTT 418245
Query 42430 TCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGG 42489
|||| || || |||||||||||| ||||| ||| ||| | || | |||| |
Sbjct 418244 TCTTTGCAGCAAGTGACGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGCCAAGAAG 418185
Query 42490 TGCAG--TACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCA 42547
| ||| ||| ||||| ||||| ||||| || ||||| || | ||| || ||| | ||
Sbjct 418184 TTCAGATTACA--GAGGCCCGCTGTTTCTATGGATTCCAAATTGGCATGGACAACATACA 418127
Query 42548 CTCTGAGGTGTA----CGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTA 42603
||||| |||| | || |||| ||||||| || |||||| |||| |
Sbjct 418126 TTCTGAAATGTATAGTCTCCTTACTG----ACACGTATATAAAAGATCCC----AGCGAA 418075
Query 42604 ACGGG----CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGG 42659
| || || ||||| ||||| || |||||||| || ||||||||||||| ||| ||
Sbjct 418074 AGGGAATTTCTCTTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGACCGG 418015
Query 42660 GCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACC 42719
|| | |||||| | | || || || | || || || |||||| |
Sbjct 418014 GCCTTGCGCTGGATTGGGGACAAAGAGGCTACCTATGGTGA---ACT----GCCTTTGCT 417962
Query 42720 GCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG-CAGAA 42778
|| || || ||| ||||||| || || | || || ||||| |||||||| ||| | |
Sbjct 417961 GCAGTGGAAGGCGTCTTCTTTTCTGGTTCTTTAGCTTCCATATTCTGGCTTAAGAAACGA 417902
Query 42779 GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCA 42838
|| | |||||| || ||||| || || || ||||| | ||||| || ||||| | ||
Sbjct 417901 GGACT-GATGCCTGGCCTCACATTTTCTAATGAACTTTTTAGCAGAGATGAGGGTTTACA 417843
Query 42839 TAGGGACTTTGCCTGCCTCCTGTTC 42863
| || ||||| ||||| |||||
Sbjct 417842 CTGTGATTTTGCTTGCCTGATGTTC 417818
>seq2
Length=18007423
Score = 84.2 bits (92), Expect = 4e-11
Identities = 95/125 (76%), Gaps = 2/125 (2%)
Strand=Plus/Plus
Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767
||||||||| | || || || ||||||||||| || || | || || ||||| ||||||
Sbjct 1941366 GTAGCCTTTGCTGCAGTAGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGG 1941425
Query 42768 CTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826
|||||| | ||| | |||||| || ||||| || || || ||||| || ||||| ||
Sbjct 1941426 CTCAAGAAACGAGGACT-GATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCAGAGA 1941484
Query 42827 CGAGG 42831
||||
Sbjct 1941485 TGAGG 1941489
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944254728858560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |