Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq599 172 5e-38
seq13 96.9 3e-15
>seq599
Length=1005688
Score = 172 bits (190), Expect = 5e-38
Identities = 425/638 (67%), Gaps = 14/638 (2%)
Strand=Plus/Minus
Query 20191 GTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATG 20250
||| || |||||||||||||| || || | ||| || || || | || || || | ||
Sbjct 754521 GTAAATATGGGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTG 754462
Query 20251 AGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCAT 20310
|| | || || || | | || |||||||| |||| ||||| || || | |||||
Sbjct 754461 CGCGATCACGTACGTGAGCAAGGTGTAGCTGGCGGTGTTGAAAGGCACACCTAGGCCCAT 754402
Query 20311 GTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACC-GTCAGCTACATAAAATTGAC 20369
|||||| || ||||| | |||||| ||||| |||||||| ||| || | || || || |
Sbjct 754401 GTCTCCTGATCTCTGGTGCAGCTGGCAGGACAGCTCACCATTCACCT-CGTAGAACTGGC 754343
Query 20370 ATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACA 20429
| | || || || || |||||||||| | | || || ||||| || ||||
Sbjct 754342 AGAGGGCATGGCATGGAGGCAGCGCCATCAGAGGAAGATCTCTTGGATTCCAAGCGCACA 754283
Query 20430 TAATGATTCTTCTATCGTGCGGATTATTTTTTAT----TAAATC-CACAATGTACGACAA 20484
| ||||||||||| || | || || |||| || | | || | | ||| |
Sbjct 754282 TGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAGTCACTCTTTGT-----AG 754228
Query 20485 TTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTG 20544
|||||||| || || |||| ||| || | |||| || ||| | |||||||| ||
Sbjct 754227 TTGGTCAACTCCTTGTCCTGAATAATCTGAATCCATATCTCTGTATTCTGCCCCAAAATG 754168
Query 20545 CCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCG 20604
|||||||||||| || ||||| || ||||| ||||| || |||| | | ||
Sbjct 754167 CCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAA 754108
Query 20605 CCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCCTGTTCTTGAAAG 20664
| |||| || || | ||| ||||| ||||| || || ||||| | || ||
Sbjct 754107 GCTATCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAG 754048
Query 20665 CTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCCA 20724
||| | | | | ||||| | ||| || |||| ||| | || || || |||
Sbjct 754047 CTCTTTAG-CTTTCTGGGTCCCTTGATAAAGCACAGCAACTCCTCCAAAACACCCTTCCA 753989
Query 20725 AAACAC-CCGCTTTGTGGTTAGTAAGGGAAAGTGGTCCCGCAGACTATACCTGGCCTGCA 20783
||||| || || || || || | ||||| | || | ||| || || | |||||||
Sbjct 753988 GAACACAACGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCA 753929
Query 20784 TGCCAAATAGAGAGAGGGTGCCTATGCCGGTGCGGTCG 20821
|||| || | || ||||| || |||||||||| |||
Sbjct 753928 TGCCGAACACCGACAGGGTCCCGGTGCCGGTGCGATCG 753891
>seq13
Length=13416947
Score = 96.9 bits (106), Expect = 3e-15
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308
|| || | ||| || || | |||| |||||||||||||| ||||| || || | |||
Sbjct 11482504 TGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGCACACCTAGGCCC 11482445
Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368
|||||||| || ||||| |||||||| ||||| |||||||||| | || || || ||
Sbjct 11482444 ATGTCTCCTGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGG 11482385
Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCA 20399
|| | || || || || ||||||||||
Sbjct 11482384 CAGAGGGCATGGCATGGAGGCAGCGCCATCA 11482354
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441333319203040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |