Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq599 172 5e-38 seq13 96.9 3e-15 >seq599 Length=1005688 Score = 172 bits (190), Expect = 5e-38 Identities = 425/638 (67%), Gaps = 14/638 (2%) Strand=Plus/Minus Query 20191 GTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATG 20250 ||| || |||||||||||||| || || | ||| || || || | || || || | || Sbjct 754521 GTAAATATGGGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTG 754462 Query 20251 AGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCAT 20310 || | || || || | | || |||||||| |||| ||||| || || | ||||| Sbjct 754461 CGCGATCACGTACGTGAGCAAGGTGTAGCTGGCGGTGTTGAAAGGCACACCTAGGCCCAT 754402 Query 20311 GTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACC-GTCAGCTACATAAAATTGAC 20369 |||||| || ||||| | |||||| ||||| |||||||| ||| || | || || || | Sbjct 754401 GTCTCCTGATCTCTGGTGCAGCTGGCAGGACAGCTCACCATTCACCT-CGTAGAACTGGC 754343 Query 20370 ATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACA 20429 | | || || || || |||||||||| | | || || ||||| || |||| Sbjct 754342 AGAGGGCATGGCATGGAGGCAGCGCCATCAGAGGAAGATCTCTTGGATTCCAAGCGCACA 754283 Query 20430 TAATGATTCTTCTATCGTGCGGATTATTTTTTAT----TAAATC-CACAATGTACGACAA 20484 | ||||||||||| || | || || |||| || | | || | | ||| | Sbjct 754282 TGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAGTCACTCTTTGT-----AG 754228 Query 20485 TTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTG 20544 |||||||| || || |||| ||| || | |||| || ||| | |||||||| || Sbjct 754227 TTGGTCAACTCCTTGTCCTGAATAATCTGAATCCATATCTCTGTATTCTGCCCCAAAATG 754168 Query 20545 CCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCG 20604 |||||||||||| || ||||| || ||||| ||||| || |||| | | || Sbjct 754167 CCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAA 754108 Query 20605 CCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCCTGTTCTTGAAAG 20664 | |||| || || | ||| ||||| ||||| || || ||||| | || || Sbjct 754107 GCTATCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAG 754048 Query 20665 CTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCCA 20724 ||| | | | | ||||| | ||| || |||| ||| | || || || ||| Sbjct 754047 CTCTTTAG-CTTTCTGGGTCCCTTGATAAAGCACAGCAACTCCTCCAAAACACCCTTCCA 753989 Query 20725 AAACAC-CCGCTTTGTGGTTAGTAAGGGAAAGTGGTCCCGCAGACTATACCTGGCCTGCA 20783 ||||| || || || || || | ||||| | || | ||| || || | ||||||| Sbjct 753988 GAACACAACGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCA 753929 Query 20784 TGCCAAATAGAGAGAGGGTGCCTATGCCGGTGCGGTCG 20821 |||| || | || ||||| || |||||||||| ||| Sbjct 753928 TGCCGAACACCGACAGGGTCCCGGTGCCGGTGCGATCG 753891 >seq13 Length=13416947 Score = 96.9 bits (106), Expect = 3e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || || | ||| || || | |||| |||||||||||||| ||||| || || | ||| Sbjct 11482504 TGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGCACACCTAGGCCC 11482445 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 |||||||| || ||||| |||||||| ||||| |||||||||| | || || || || Sbjct 11482444 ATGTCTCCTGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGG 11482385 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCA 20399 || | || || || || |||||||||| Sbjct 11482384 CAGAGGGCATGGCATGGAGGCAGCGCCATCA 11482354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441333319203040