Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq38 91.5 1e-13
seq407 86.0 5e-12
>seq38
Length=10264441
Score = 91.5 bits (100), Expect = 1e-13
Identities = 90/114 (79%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| |||| ||| ||||||||||| || || ||| ||| ||||| |||||||| ||||
Sbjct 9540872 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 9540813
Query 33961 AAT-TGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013
| | ||| || | || |||| || ||||||||||||||||| |||||||| ||
Sbjct 9540812 AGTGTGTGGC-CATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTC 9540760
>seq407
Length=3256691
Score = 86.0 bits (94), Expect = 5e-12
Identities = 160/232 (69%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| |||| ||| ||||||||||| || || ||| ||| ||||| |||||||| ||||
Sbjct 904219 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 904278
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
| || | || |||| |||| || |||||||||||| |||||||| || ||
Sbjct 904279 AGCGTGCGGCCATCCTCCAGCTGCTGGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGG 904338
Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGATTCG 34077
| | ||| |||| | | | |||| |||| || | || || | ||| | | |||
Sbjct 904339 ATACCCTCCTTGT-CTTGAATTTTGGCTT--TGACATTCTCAATGGTGTCATTGGGCTCG 904395
Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTT 34129
|| | || || || || || || || || ||||||||||| |||||||
Sbjct 904396 ACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATTT 904447
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397027770699112
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |