Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq38 91.5 1e-13 seq407 86.0 5e-12 >seq38 Length=10264441 Score = 91.5 bits (100), Expect = 1e-13 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||| ||| ||||||||||| || || ||| ||| ||||| |||||||| |||| Sbjct 9540872 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 9540813 Query 33961 AAT-TGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | ||| || | || |||| || ||||||||||||||||| |||||||| || Sbjct 9540812 AGTGTGTGGC-CATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTC 9540760 >seq407 Length=3256691 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||| ||| ||||||||||| || || ||| ||| ||||| |||||||| |||| Sbjct 904219 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 904278 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || |||| |||| || |||||||||||| |||||||| || || Sbjct 904279 AGCGTGCGGCCATCCTCCAGCTGCTGGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGG 904338 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGATTCG 34077 | | ||| |||| | | | |||| |||| || | || || | ||| | | ||| Sbjct 904339 ATACCCTCCTTGT-CTTGAATTTTGGCTT--TGACATTCTCAATGGTGTCATTGGGCTCG 904395 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTT 34129 || | || || || || || || || || ||||||||||| ||||||| Sbjct 904396 ACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATTT 904447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397027770699112