Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq407 107 2e-18
seq1 105 7e-18
seq38 95.1 1e-14
seq849 91.5 2e-13
seq542 91.5 2e-13
seq170 91.5 2e-13
seq73 91.5 2e-13
seq19 91.5 2e-13
seq503 89.7 6e-13
seq136 82.4 8e-11
>seq407
Length=3256691
Score = 107 bits (118), Expect = 2e-18
Identities = 156/218 (72%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053
|||| ||||| |||| ||| ||| || || || ||||| || | || || || |
Sbjct 904231 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGCGTGCGGCCA 904290
Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113
|| || ||||||| | || ||||| || ||||||||||| | ||| | | |||||||
Sbjct 904291 TCCTCCAGCTGCTGGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 904350
Query 42114 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
| | ||| |||| | ||||| || | | ||||| | | || || || | |||||
Sbjct 904351 T-CTTGAATTTTGGCTTTGACATTCTCAATGGTGTCATTGGGCTCGACCTCAAGGGTGAT 904409
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTT 42210
||| |||||||| || ||||| |||||||| |||||||
Sbjct 904410 GGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATTT 904447
>seq1
Length=21314971
Score = 105 bits (116), Expect = 7e-18
Identities = 155/216 (72%), Gaps = 4/216 (2%)
Strand=Plus/Minus
Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053
|||| ||||| |||| ||| ||| || || || ||||| || | ||||| || |
Sbjct 18631144 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTG--AGAGTGCGGCCA 18631087
Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113
|| || ||||| |||||||| ||||| || ||||||||||| | ||| | | ||||||
Sbjct 18631086 TCCTCCAGCTGTTTACCAGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCTTCCTTG 18631027
Query 42114 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
| ||| |||| | ||||| || | ||||| || | || || || | |||||
Sbjct 18631026 T-ATTGAATTTTGGCTTTGACATTCTTAATGGTGTCACTGGGCTCGACCTCAAGGGTGAT 18630968
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||| |||||||| | ||||| |||||||| |||||
Sbjct 18630967 GGTCTTGCCCGTGACAGTCTTCACAAAGATCTGCAT 18630932
>seq38
Length=10264441
Score = 95.1 bits (104), Expect = 1e-14
Identities = 153/216 (71%), Gaps = 3/216 (1%)
Strand=Plus/Minus
Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053
|||| ||||| |||| ||| ||| || || || ||||| || | || || | |
Sbjct 9540860 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGTGTGTGGCCA 9540801
Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113
|| || ||||| || || || ||||| || ||||||||||| | ||| | | |||||||
Sbjct 9540800 TCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 9540741
Query 42114 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
| | ||| |||| | ||||| || | | ||||| | | || || || | |||||
Sbjct 9540740 T-CTTGAATTTTGGCTTTGACATTCTCAATGGTGTCAC-GGGCTCGACCTCAAGGGTGAT 9540683
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||| |||||| | || ||||| |||||||| |||||
Sbjct 9540682 GGTCTTGCCCATGAGGGTCTTCACAAAGATCTGCAT 9540647
>seq849
Length=318894
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 134874 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 134933
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 134934 ATACTAACGAGGA 134946
>seq542
Length=1979518
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 729636 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 729577
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 729576 ATACTAACGAGGA 729564
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 682435 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 682494
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 682495 TACTAACGAGGA 682506
>seq170
Length=4466143
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 3915212 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 3915271
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 3915272 ATACTAACGAGGA 3915284
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 3905387 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 3905446
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 3905447 TACTAACGAGGA 3905458
>seq73
Length=7711548
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 6031450 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 6031391
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 6031390 ATACTAACGAGGA 6031378
>seq19
Length=20362211
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 13712922 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 13712863
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 13712862 ATACTAACGAGGA 13712850
>seq503
Length=1449082
Score = 89.7 bits (98), Expect = 6e-13
Identities = 153/221 (69%), Gaps = 2/221 (1%)
Strand=Plus/Minus
Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053
|||| |||| |||| || ||| || || || |||||||||| ||||| | |
Sbjct 1047250 CGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCAGCCA 1047191
Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113
|| || |||||||| || || || ||||| | ||||||||||| || | || |||||
Sbjct 1047190 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGG--GGGATGCCTTCCTTA 1047133
Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173
||| ||| || || | | | | ||||| || | ||||| || | ||||||
Sbjct 1047132 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTAGGCTCCACCTCCAAGGTGATG 1047073
Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214
|| ||||| || || ||||| || ||||| | |||||| ||
Sbjct 1047072 GTCTTGCCGGTCAGGGTCTTCACGAAGATATACATTTTGAC 1047032
>seq136
Length=5279821
Score = 82.4 bits (90), Expect = 8e-11
Identities = 151/216 (70%), Gaps = 4/216 (2%)
Strand=Plus/Minus
Query 41995 GCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCG-CTCG 42053
||| ||||| |||| ||| ||| || || || | ||| |||| ||||| | || |
Sbjct 2782419 GCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTCGTAGTCAGAGAGAGTGTGGCTAG 2782360
Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113
| || ||||| || ||||| ||||| || ||||||||||| | | | | | ||||||
Sbjct 2782359 GC-TCCAGCTGTTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTTGGATACCCTCCTTC 2782301
Query 42114 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
| | ||| |||| | ||||| || | ||||| | || || || | | |||||
Sbjct 2782300 T-CTTGAATTTTGGCTTTGACATTCTCAGTGGTGTCATTGGACTCGACCTAAAGAGTGAT 2782242
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||| |||||| | || || || |||||||| |||||
Sbjct 2782241 GGTCTTGCCCATGAGGGTTTTCACAAAGATCTGCAT 2782206
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543164209615040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |