Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq170 89.7 5e-13
seq1 89.7 5e-13
seq683 86.0 6e-12
seq4 86.0 6e-12
>seq170
Length=4466143
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| ||||| | ||| | || | || | | | ||||| ||||| ||||||||||| |
Sbjct 3883229 CCCCCTCGGAGACGGAGGACCAGGTGAAGGGTGGACTCTTTTTGGATGTTGTAGTCAGAC 3883288
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || ||| || || || || || |||| | |||| | | ||| ||||| |||||
Sbjct 3883289 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 3883348
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| ||||| ||||| ||| ||| || | | || | |||||| | | |||||||
Sbjct 3883349 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACC 3883408
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| || | || || || ||||| || || || || ||||||||
Sbjct 3883409 TCGAGGGTGATGGTCTTGCCGGTCAGTGTCTTCACGAAGATCTGCAT 3883455
>seq1
Length=21314971
Score = 89.7 bits (98), Expect = 5e-13
Identities = 140/196 (71%), Gaps = 6/196 (3%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||| || || |||||||||| || | ||| || ||||| || |||||||| | |
Sbjct 18631123 GACTCTTTCTGGATGTTGTAGT--CTGAGAGTGCGGCCATCCTCCAGCTGTTTACCAGCA 18631066
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT--A 138538
| || |||||||| ||||| || || |||||||| |||| ||| |||| | |||
Sbjct 18631065 AATATCAGACGCTGCTGGTCAGGTGGGATACCTTCCTTGT-ATTGAATTTTGGCTTTGAC 18631007
Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
||| || | |||||| | | ||| ||||| | || | || || || || | ||| |
Sbjct 18631006 ATTCTT-AATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTGACAGTCT 18630948
Query 138599 TTACAAAAATCTGCAT 138614
| ||||| ||||||||
Sbjct 18630947 TCACAAAGATCTGCAT 18630932
>seq683
Length=714717
Score = 86.0 bits (94), Expect = 6e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| ||||||| |||| || | || | | | ||||| || || |||||||||||
Sbjct 111375 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 111434
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| || || ||||| || | |||||||| | | || |||||||| || || || ||
Sbjct 111435 GAGCGTGCGGCCATCCTCCAGCTATTTACCGGCAAATATCAGACGCTGCTGATCAGGTGG 111494
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCA 138565
||||| || ||||| ||| |||| | ||||| | || | |||||| | | ||| |
Sbjct 111495 GATACCCTCCTTGTC-TTGAATTTTGGCTTTAACATTCTCAATGGTGTCACTGGGCTCGA 111553
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| | || | || || || | || || || ||||| ||||||||
Sbjct 111554 CCTCAAGGGTGATGGTCTTGCCCATGAGGGTCTTCACAAAGATCTGCAT 111602
>seq4
Length=15321207
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || || | ||| || | ||| | | |||||||| |||||||||||||| |
Sbjct 5243222 CCACCACGAAATCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 5243163
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| |||||| || || ||||| || || | | |||| || | || || || |||||
Sbjct 5243162 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 5243103
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| ||||| || || |||||| |||| | ||| | || || | | || |||
Sbjct 5243102 ATTCCTTCCTTATCCTGGATTTTGGCCTTTACATTTTCTATCGTTTCCGAGGGTTCAACC 5243043
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| || | || || || || || ||||| || |||||||||||
Sbjct 5243042 TCGAGGGTTATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 5242996
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496218009328320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |