Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq170 89.7 5e-13 seq1 89.7 5e-13 seq683 86.0 6e-12 seq4 86.0 6e-12 >seq170 Length=4466143 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| | || | || | | | ||||| ||||| ||||||||||| | Sbjct 3883229 CCCCCTCGGAGACGGAGGACCAGGTGAAGGGTGGACTCTTTTTGGATGTTGTAGTCAGAC 3883288 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| || || || || || |||| | |||| | | ||| ||||| ||||| Sbjct 3883289 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 3883348 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| ||| || | | || | |||||| | | ||||||| Sbjct 3883349 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACC 3883408 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || || ||||| || || || || |||||||| Sbjct 3883409 TCGAGGGTGATGGTCTTGCCGGTCAGTGTCTTCACGAAGATCTGCAT 3883455 >seq1 Length=21314971 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/196 (71%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || |||||||||| || | ||| || ||||| || |||||||| | | Sbjct 18631123 GACTCTTTCTGGATGTTGTAGT--CTGAGAGTGCGGCCATCCTCCAGCTGTTTACCAGCA 18631066 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT--A 138538 | || |||||||| ||||| || || |||||||| |||| ||| |||| | ||| Sbjct 18631065 AATATCAGACGCTGCTGGTCAGGTGGGATACCTTCCTTGT-ATTGAATTTTGGCTTTGAC 18631007 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | |||||| | | ||| ||||| | || | || || || || | ||| | Sbjct 18631006 ATTCTT-AATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTGACAGTCT 18630948 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 18630947 TCACAAAGATCTGCAT 18630932 >seq683 Length=714717 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||||| |||| || | || | | | ||||| || || ||||||||||| Sbjct 111375 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 111434 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||||| || | |||||||| | | || |||||||| || || || || Sbjct 111435 GAGCGTGCGGCCATCCTCCAGCTATTTACCGGCAAATATCAGACGCTGCTGATCAGGTGG 111494 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| |||| | ||||| | || | |||||| | | ||| | Sbjct 111495 GATACCCTCCTTGTC-TTGAATTTTGGCTTTAACATTCTCAATGGTGTCACTGGGCTCGA 111553 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || | || || || ||||| |||||||| Sbjct 111554 CCTCAAGGGTGATGGTCTTGCCCATGAGGGTCTTCACAAAGATCTGCAT 111602 >seq4 Length=15321207 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || || | ||| || | ||| | | |||||||| |||||||||||||| | Sbjct 5243222 CCACCACGAAATCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 5243163 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || ||||| || || | | |||| || | || || || ||||| Sbjct 5243162 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 5243103 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| || || |||||| |||| | ||| | || || | | || ||| Sbjct 5243102 ATTCCTTCCTTATCCTGGATTTTGGCCTTTACATTTTCTATCGTTTCCGAGGGTTCAACC 5243043 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || || || || ||||| || ||||||||||| Sbjct 5243042 TCGAGGGTTATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 5242996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496218009328320