Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq34 187 4e-42 seq310 113 7e-20 >seq34 Length=10557659 Score = 187 bits (206), Expect = 4e-42 Identities = 180/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || ||||||||||| ||| |||||||||| || || ||||| || |||||||| || Sbjct 7335555 GTCTGGAACAACTGCTCATCATCCCATTCCGGATGCTCCTGTTTAAGCACATCGCACACT 7335614 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 ||||||||||| | |||||| || ||||| |||||||| | ||| ||||| | |||||| Sbjct 7335615 CTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 7335674 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | |||||| ||||| ||||||| || || |||| || | || | ||| | Sbjct 7335675 ACCTCCTGCCCCACCGCAAACCGCAGATGCTCAGGAACTTGAGGAGGGTAGATCATCTCT 7335734 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTGA 9969 |||| || |||||||| ||||| |||||||| || || ||||| | |||| Sbjct 7335735 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCTGA 7335785 Score = 172 bits (190), Expect = 8e-38 Identities = 209/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| || ||||| || || ||||| |||||||| | || || || | ||| Sbjct 7333840 AAGGGACAGCCTTTCACGTTATTGCAGATGAGAGACTGAATTGAGGCAGTGTTGATGATT 7333899 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | ||||| || || || || || ||||| || |||||||| || || || || ||||| Sbjct 7333900 TTGAAACCCACTTCTCCACCAAAAGTGCTTGGCTTCCAGTAGGCGGGAGAACATATGACA 7333959 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||||||||| || || || || | || | || ||||||| ||| Sbjct 7333960 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAACTTCTACCATAGTCTCACCAAAG 7334019 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 |||||| | ||||| || ||||| || | | | ||| || || || | ||| |||| | Sbjct 7334020 ATGGCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGGATACAGCTCCATAGCATCGATG 7334079 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || |||||||| |||| |||||| ||||| || |||||||| ||| Sbjct 7334080 TCACCATAGAGTGCTTTCAACTCTGCAGCCATTTCCTTCTCTCCT 7334124 Score = 123 bits (136), Expect = 4e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || || ||||| ||||||||| ||| || ||||| || | ||| ||| Sbjct 7337312 TCACCTTTCACACCCAGGGGAGTTGGGCAGTCATCAGGTACTGGAGGAAGGGCTCTAGTA 7337371 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| || || || || ||||||||||| ||||||||||| || | |||||| Sbjct 7337372 TAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAACATTGTAGGTT 7337431 Query 10507 GGGGGACTGTCAATCA 10522 || ||||| ||||||| Sbjct 7337432 GGTGGACTCTCAATCA 7337447 Score = 116 bits (128), Expect = 5e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| ||| | |||||||| || |||||| ||| ||| | || Sbjct 7336712 TCTTACCCCATGGCCCAGGCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 7336771 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || ||||| || | || || || ||||||| || | |||||||||||| Sbjct 7336772 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGAGCCCTGGGGATC 7336831 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAGACG 10300 ||||| || | || | | || || ||| |||||||||| ||||||| || || | Sbjct 7336832 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCACTTGAATCAGGAAGCTG 7336891 Query 10301 CGCCTTACCTGA 10312 | ||||||||| Sbjct 7336892 CTTCTTACCTGA 7336903 Score = 93.3 bits (102), Expect = 6e-14 Identities = 191/284 (67%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 || ||||| || | ||||| |||||||| || |||| ||||| || | | | || Sbjct 7334973 CCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGTAATTCCATGTTCCAGTAACATA 7335032 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 || |||||||| | || |||| || || || ||| || |||| ||| Sbjct 7335033 GAGTTGTTGTAGATAAACTGTTGATAGTTGTAGCTCTGGTCATGAATTTGAAAGGTGTCA 7335092 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 |||| || | ||||||| | ||||||||||| ||||| || || || || || |||||| Sbjct 7335093 GGCAGAAGGGGATGCCAGTGATAGAGGGTATTAAACTCAGCAGCAATACGATTTTGGTAC 7335152 Query 9616 TGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTG 9675 || || | ||| |||| || |||||||| | || | |||||| || || || Sbjct 7335153 TGGAATTGTTTGTTGAAAAGTAGTTCTGGGTCAAATTTAAGTTTGAAGTGATAACCACTC 7335212 Query 9676 AGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | ||||| ||||| | | || | ||| ||||| || || || Sbjct 7335213 AAGTGCTGTACATAGTCTTCAATGACAATCTTAATAGTCTCTCC 7335256 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/136 (74%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| || || |||| | |||| || || ||||| |||||||| ||| ||| | Sbjct 7338376 CTTACGTGTTGAGCAGTTTTCACCATAGAATCCTGTCCGGGTACAATCACACTTATACTG 7338435 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 ||||| ||||| |||| ||||| ||| | || || || |||| ||||||||||| || Sbjct 7338436 GTCAAATCCCACACTCATACATACACCTTGGTTTTGACATGGGTAGGAACAGCAAGGATT 7338495 Query 10960 GGCTGCAATTTAAAAG 10975 ||| ||| |||||| Sbjct 7338496 TGCTACAA--TAAAAG 7338509 >seq310 Length=2722360 Score = 113 bits (124), Expect = 7e-20 Identities = 176/249 (71%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || ||||||| || || | || ||||| || ||||| || |||||||| Sbjct 2583821 GTGGCCGTCTTGACGATGTTAAAGCCCATCTCGCCGCCAAATGTGCTCGGCTTCCAGTAT 2583762 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 |||| || |||||| ||| | | ||| || || | |||||| |||||||| | ||| Sbjct 2583761 TCCGGAGAACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCT 2583702 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCC-AGTGTA 9111 || || ||||| || ||||| | ||| | ||||| | || | |||| || || Sbjct 2583701 ATCATACTCTCCCCAAAGATAGAGTTCGGATGGCACTTTTCAA-GAAGCAGCCCAGGATA 2583643 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || || | || || | ||| ||||| | | |||||||| || || ||||||||||| Sbjct 2583642 GAACTCCAATGCATCAATGTCTCCATACAACTCCTCCAACTCCGCTGCCATCTCCTTCTC 2583583 Query 9172 ACCTACAAG 9180 |||||||| Sbjct 2583582 TCCTACAAG 2583574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723663262530400