Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq34 187 4e-42
seq310 113 7e-20
>seq34
Length=10557659
Score = 187 bits (206), Expect = 4e-42
Identities = 180/231 (78%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798
|| || ||||||||||| ||| |||||||||| || || ||||| || |||||||| ||
Sbjct 7335555 GTCTGGAACAACTGCTCATCATCCCATTCCGGATGCTCCTGTTTAAGCACATCGCACACT 7335614
Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858
||||||||||| | |||||| || ||||| |||||||| | ||| ||||| | ||||||
Sbjct 7335615 CTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 7335674
Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918
|| || | |||||| ||||| ||||||| || || |||| || | || | ||| |
Sbjct 7335675 ACCTCCTGCCCCACCGCAAACCGCAGATGCTCAGGAACTTGAGGAGGGTAGATCATCTCT 7335734
Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTGA 9969
|||| || |||||||| ||||| |||||||| || || ||||| | ||||
Sbjct 7335735 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCTGA 7335785
Score = 172 bits (190), Expect = 8e-38
Identities = 209/285 (73%), Gaps = 0/285 (0%)
Strand=Plus/Plus
Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950
|| ||||| || ||||| || || ||||| |||||||| | || || || | |||
Sbjct 7333840 AAGGGACAGCCTTTCACGTTATTGCAGATGAGAGACTGAATTGAGGCAGTGTTGATGATT 7333899
Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010
| ||||| || || || || || ||||| || |||||||| || || || || |||||
Sbjct 7333900 TTGAAACCCACTTCTCCACCAAAAGTGCTTGGCTTCCAGTAGGCGGGAGAACATATGACA 7333959
Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070
|| |||| || ||||||||||| || || || || | || | || ||||||| |||
Sbjct 7333960 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAACTTCTACCATAGTCTCACCAAAG 7334019
Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130
|||||| | ||||| || ||||| || | | | ||| || || || | ||| |||| |
Sbjct 7334020 ATGGCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGGATACAGCTCCATAGCATCGATG 7334079
Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
|| |||||||| |||| |||||| ||||| || |||||||| |||
Sbjct 7334080 TCACCATAGAGTGCTTTCAACTCTGCAGCCATTTCCTTCTCTCCT 7334124
Score = 123 bits (136), Expect = 4e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446
||||||||||| || || ||||| ||||||||| ||| || ||||| || | ||| |||
Sbjct 7337312 TCACCTTTCACACCCAGGGGAGTTGGGCAGTCATCAGGTACTGGAGGAAGGGCTCTAGTA 7337371
Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506
|||||||| || || || || ||||||||||| ||||||||||| || | ||||||
Sbjct 7337372 TAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAACATTGTAGGTT 7337431
Query 10507 GGGGGACTGTCAATCA 10522
|| ||||| |||||||
Sbjct 7337432 GGTGGACTCTCAATCA 7337447
Score = 116 bits (128), Expect = 5e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180
|||||||||||| |||| ||| | |||||||| || |||||| ||| ||| | ||
Sbjct 7336712 TCTTACCCCATGGCCCAGGCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 7336771
Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240
||| || || || ||||| || | || || || ||||||| || | ||||||||||||
Sbjct 7336772 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGAGCCCTGGGGATC 7336831
Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAGACG 10300
||||| || | || | | || || ||| |||||||||| ||||||| || || |
Sbjct 7336832 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCACTTGAATCAGGAAGCTG 7336891
Query 10301 CGCCTTACCTGA 10312
| |||||||||
Sbjct 7336892 CTTCTTACCTGA 7336903
Score = 93.3 bits (102), Expect = 6e-14
Identities = 191/284 (67%), Gaps = 0/284 (0%)
Strand=Plus/Plus
Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495
|| ||||| || | ||||| |||||||| || |||| ||||| || | | | ||
Sbjct 7334973 CCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGTAATTCCATGTTCCAGTAACATA 7335032
Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555
|| |||||||| | || |||| || || || ||| || |||| |||
Sbjct 7335033 GAGTTGTTGTAGATAAACTGTTGATAGTTGTAGCTCTGGTCATGAATTTGAAAGGTGTCA 7335092
Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615
|||| || | ||||||| | ||||||||||| ||||| || || || || || ||||||
Sbjct 7335093 GGCAGAAGGGGATGCCAGTGATAGAGGGTATTAAACTCAGCAGCAATACGATTTTGGTAC 7335152
Query 9616 TGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTG 9675
|| || | ||| |||| || |||||||| | || | |||||| || || ||
Sbjct 7335153 TGGAATTGTTTGTTGAAAAGTAGTTCTGGGTCAAATTTAAGTTTGAAGTGATAACCACTC 7335212
Query 9676 AGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719
| ||||| ||||| | | || | ||| ||||| || || ||
Sbjct 7335213 AAGTGCTGTACATAGTCTTCAATGACAATCTTAATAGTCTCTCC 7335256
Score = 86.0 bits (94), Expect = 9e-12
Identities = 101/136 (74%), Gaps = 2/136 (1%)
Strand=Plus/Plus
Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899
|||||| || || |||| | |||| || || ||||| |||||||| ||| ||| |
Sbjct 7338376 CTTACGTGTTGAGCAGTTTTCACCATAGAATCCTGTCCGGGTACAATCACACTTATACTG 7338435
Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959
||||| ||||| |||| ||||| ||| | || || || |||| ||||||||||| ||
Sbjct 7338436 GTCAAATCCCACACTCATACATACACCTTGGTTTTGACATGGGTAGGAACAGCAAGGATT 7338495
Query 10960 GGCTGCAATTTAAAAG 10975
||| ||| ||||||
Sbjct 7338496 TGCTACAA--TAAAAG 7338509
>seq310
Length=2722360
Score = 113 bits (124), Expect = 7e-20
Identities = 176/249 (71%), Gaps = 2/249 (1%)
Strand=Plus/Minus
Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992
|| || || || ||||||| || || | || ||||| || ||||| || ||||||||
Sbjct 2583821 GTGGCCGTCTTGACGATGTTAAAGCCCATCTCGCCGCCAAATGTGCTCGGCTTCCAGTAT 2583762
Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052
|||| || |||||| ||| | | ||| || || | |||||| |||||||| | |||
Sbjct 2583761 TCCGGAGAACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCT 2583702
Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCC-AGTGTA 9111
|| || ||||| || ||||| | ||| | ||||| | || | |||| || ||
Sbjct 2583701 ATCATACTCTCCCCAAAGATAGAGTTCGGATGGCACTTTTCAA-GAAGCAGCCCAGGATA 2583643
Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171
|| || | || || | ||| ||||| | | |||||||| || || |||||||||||
Sbjct 2583642 GAACTCCAATGCATCAATGTCTCCATACAACTCCTCCAACTCCGCTGCCATCTCCTTCTC 2583583
Query 9172 ACCTACAAG 9180
||||||||
Sbjct 2583582 TCCTACAAG 2583574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723663262530400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |